data_1MDG
# 
_entry.id   1MDG 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.386 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1MDG         pdb_00001mdg 10.2210/pdb1mdg/pdb 
NDB   UR0024       ?            ?                   
RCSB  RCSB016835   ?            ?                   
WWPDB D_1000016835 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2003-08-12 
2 'Structure model' 1 1 2008-04-28 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2011-09-28 
5 'Structure model' 1 4 2024-02-14 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Atomic model'              
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 5 'Structure model' chem_comp_atom 
2 5 'Structure model' chem_comp_bond 
3 5 'Structure model' database_2     
4 5 'Structure model' struct_conn    
5 5 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_database_2.pdbx_DOI'                
2 5 'Structure model' '_database_2.pdbx_database_accession' 
3 5 'Structure model' '_struct_conn.pdbx_dist_value'        
4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
5 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'      
6 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'    
7 5 'Structure model' '_struct_site.pdbx_auth_asym_id'      
8 5 'Structure model' '_struct_site.pdbx_auth_comp_id'      
9 5 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1MDG 
_pdbx_database_status.recvd_initial_deposition_date   2002-08-07 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Pan, B.C.'         1 
'Xiong, Y.'         2 
'Shi, K.'           3 
'Sundaralingam, M.' 4 
# 
_citation.id                        primary 
_citation.title                     
'An Eight-Stranded Helical Fragment in RNA Crystal Structure: Implications for Tetraplex Interaction' 
_citation.journal_abbrev            Structure 
_citation.journal_volume            11 
_citation.page_first                825 
_citation.page_last                 831 
_citation.year                      2003 
_citation.journal_id_ASTM           STRUE6 
_citation.country                   UK 
_citation.journal_id_ISSN           0969-2126 
_citation.journal_id_CSD            2005 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12842045 
_citation.pdbx_database_id_DOI      '10.1016/S0969-2126(03)00108-4' 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Pan, B.C.'         1 ? 
primary 'Xiong, Y.'         2 ? 
primary 'Shi, K.'           3 ? 
primary 'Sundaralingam, M.' 4 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3'" 1995.093 1  ? ? ? ? 
2 non-polymer syn 'SODIUM ION'                      22.990   5  ? ? ? ? 
3 non-polymer syn 'COBALT HEXAMMINE(III)'           161.116  1  ? ? ? ? 
4 water       nat water                             18.015   16 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       'U(BGM)AGGU' 
_entity_poly.pdbx_seq_one_letter_code_can   UGAGGU 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'SODIUM ION'            NA  
3 'COBALT HEXAMMINE(III)' NCO 
4 water                   HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 U   n 
1 2 BGM n 
1 3 A   n 
1 4 G   n 
1 5 G   n 
1 6 U   n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"                 ? 'C10 H14 N5 O7 P'    347.221 
BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"                 ? 'C10 H14 N5 O8 P'    363.221 
HOH non-polymer   . WATER                                        ? 'H2 O'               18.015  
NA  non-polymer   . 'SODIUM ION'                                 ? 'Na 1'               22.990  
NCO non-polymer   . 'COBALT HEXAMMINE(III)'                      ? 'Co H18 N6 3'        161.116 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"                   ? 'C9 H13 N2 O9 P'     324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 U   1 1 1 U   URI A . n 
A 1 2 BGM 2 2 2 BGM GUA A . n 
A 1 3 A   3 3 3 A   ADE A . n 
A 1 4 G   4 4 4 G   GUA A . n 
A 1 5 G   5 5 5 G   GUA A . n 
A 1 6 U   6 6 6 U   URI A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 NA  1  101 101 NA  NA1 A . 
C 2 NA  1  102 102 NA  NA1 A . 
D 2 NA  1  103 103 NA  NA1 A . 
E 2 NA  1  104 104 NA  NA1 A . 
F 2 NA  1  105 105 NA  NA1 A . 
G 3 NCO 1  201 201 NCO COB A . 
H 4 HOH 1  301 301 HOH WAT A . 
H 4 HOH 2  302 302 HOH WAT A . 
H 4 HOH 3  303 303 HOH WAT A . 
H 4 HOH 4  304 304 HOH WAT A . 
H 4 HOH 5  305 305 HOH WAT A . 
H 4 HOH 6  306 316 HOH WAT A . 
H 4 HOH 7  307 307 HOH WAT A . 
H 4 HOH 8  308 308 HOH WAT A . 
H 4 HOH 9  309 309 HOH WAT A . 
H 4 HOH 10 310 310 HOH WAT A . 
H 4 HOH 11 312 312 HOH WAT A . 
H 4 HOH 12 313 313 HOH WAT A . 
H 4 HOH 13 314 314 HOH WAT A . 
H 4 HOH 14 315 315 HOH WAT A . 
H 4 HOH 15 316 317 HOH WAT A . 
H 4 HOH 16 411 411 HOH WAT A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DENZO     'data reduction' . ? 1 
SCALEPACK 'data scaling'   . ? 2 
CNS       refinement       . ? 3 
CNS       phasing          . ? 4 
# 
_cell.entry_id           1MDG 
_cell.length_a           35.956 
_cell.length_b           35.956 
_cell.length_c           38.045 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              16 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         1MDG 
_symmetry.space_group_name_H-M             'I 4 2 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                97 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1MDG 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   20.17 
_exptl_crystal.density_Matthews      1.54 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.6 
_exptl_crystal_grow.pdbx_details    
'MPD, MgCl2, Cobalt(III)hexammine, ethidine bromide, sodium cacodylate, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.details 
1 1 1 MPD                    ? ? ? 
1 2 1 MgCl2                  ? ? ? 
1 3 1 'Cobalt(III)hexammine' ? ? ? 
1 4 1 'ethidine bromide'     ? ? ? 
1 5 1 'sodium cacodylate'    ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           105 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   ENRAF-NONIUS 
_diffrn_detector.pdbx_collection_date   2001-05-31 
_diffrn_detector.details                mirrors 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    graphite 
_diffrn_radiation.pdbx_diffrn_protocol             MAD 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
loop_
_diffrn_radiation_wavelength.id 
_diffrn_radiation_wavelength.wavelength 
_diffrn_radiation_wavelength.wt 
1 0.9195 1.0 
2 0.9192 1.0 
3 0.800  1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'APS BEAMLINE 14-BM-D' 
_diffrn_source.pdbx_synchrotron_site       APS 
_diffrn_source.pdbx_synchrotron_beamline   14-BM-D 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        '0.9195, 0.9192, 0.800' 
# 
_reflns.entry_id                     1MDG 
_reflns.observed_criterion_sigma_F   2.0 
_reflns.observed_criterion_sigma_I   2.0 
_reflns.d_resolution_high            1.5 
_reflns.d_resolution_low             30.0 
_reflns.number_all                   3807 
_reflns.number_obs                   3800 
_reflns.percent_possible_obs         99.8 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              0.056 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              41.7 
_reflns.R_free_details               ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_reflns_shell.d_res_high             1.50 
_reflns_shell.d_res_low              1.55 
_reflns_shell.percent_possible_all   98.6 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        0.309 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      364 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
# 
_refine.entry_id                                 1MDG 
_refine.ls_d_res_high                            1.50 
_refine.ls_d_res_low                             30.0 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_ls_sigma_I                          ? 
_refine.ls_number_reflns_all                     3821 
_refine.ls_number_reflns_obs                     3763 
_refine.ls_number_reflns_R_free                  381 
_refine.ls_percent_reflns_obs                    98.5 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.172 
_refine.ls_R_factor_R_free                       0.194 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          MAD 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.pdbx_R_Free_selection_details            random 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             isotropic 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_overall_phase_error                 ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   128 
_refine_hist.pdbx_number_atoms_ligand         12 
_refine_hist.number_atoms_solvent             16 
_refine_hist.number_atoms_total               156 
_refine_hist.d_res_high                       1.50 
_refine_hist.d_res_low                        30.0 
# 
_database_PDB_matrix.entry_id          1MDG 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1MDG 
_struct.title                     'An Alternating Antiparallel Octaplex in an RNA Crystal Structure' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1MDG 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'tetraplex, base tetrads, base octads, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 3 ? 
H N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1MDG 
_struct_ref.pdbx_db_accession          1MDG 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              1MDG 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 6 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             1MDG 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  6 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   tetrameric 
_pdbx_struct_assembly.oligomeric_count     4 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2,3,4 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z   1.0000000000  0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000  
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  -1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
3 'crystal symmetry operation' 3_555 -y,x,z  0.0000000000  -1.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
4 'crystal symmetry operation' 4_555 y,-x,z  0.0000000000  1.0000000000  0.0000000000 0.0000000000 -1.0000000000 0.0000000000  
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.details               'The three strands of the tetraplex is generated by the four fold axis' 
_struct_biol.pdbx_parent_biol_id   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1 covale both ? A U   1 "O3'" ? ? ? 1_555 A BGM 2 P  ? ? A U   1 A BGM 2   1_555 ? ? ? ? ? ? ? 1.592 ? ? 
covale2 covale both ? A BGM 2 "O3'" ? ? ? 1_555 A A   3 P  ? ? A BGM 2 A A   3   1_555 ? ? ? ? ? ? ? 1.633 ? ? 
metalc1 metalc ?    ? A BGM 2 O6    ? ? ? 1_555 B NA  . NA ? ? A BGM 2 A NA  101 1_555 ? ? ? ? ? ? ? 2.865 ? ? 
metalc2 metalc ?    ? A BGM 2 O6    ? ? ? 1_555 C NA  . NA ? ? A BGM 2 A NA  102 1_555 ? ? ? ? ? ? ? 2.823 ? ? 
metalc3 metalc ?    ? A G   4 O6    ? ? ? 1_555 D NA  . NA ? ? A G   4 A NA  103 1_555 ? ? ? ? ? ? ? 2.995 ? ? 
metalc4 metalc ?    ? A G   4 O6    ? ? ? 1_555 E NA  . NA ? ? A G   4 A NA  104 1_555 ? ? ? ? ? ? ? 2.752 ? ? 
metalc5 metalc ?    ? A G   5 O6    ? ? ? 1_555 E NA  . NA ? ? A G   5 A NA  104 1_555 ? ? ? ? ? ? ? 2.749 ? ? 
metalc6 metalc ?    ? A G   5 O6    ? ? ? 1_555 F NA  . NA ? ? A G   5 A NA  105 1_555 ? ? ? ? ? ? ? 2.830 ? ? 
metalc7 metalc ?    ? A U   6 O4    ? ? ? 1_555 F NA  . NA ? ? A U   6 A NA  105 1_555 ? ? ? ? ? ? ? 2.703 ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 O6 ? A G 4 ? A G 4 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 71.8 ? 
2 O6 ? A G 5 ? A G 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 69.7 ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A NA  101 ? 16 'BINDING SITE FOR RESIDUE NA A 101'  
AC2 Software A NA  102 ? 20 'BINDING SITE FOR RESIDUE NA A 102'  
AC3 Software A NA  103 ? 16 'BINDING SITE FOR RESIDUE NA A 103'  
AC4 Software A NA  104 ? 16 'BINDING SITE FOR RESIDUE NA A 104'  
AC5 Software A NA  105 ? 12 'BINDING SITE FOR RESIDUE NA A 105'  
AC6 Software A NCO 201 ? 12 'BINDING SITE FOR RESIDUE NCO A 201' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 16 BGM A 2 ? BGM A 2   . ? 3_555  ? 
2  AC1 16 BGM A 2 ? BGM A 2   . ? 6_556  ? 
3  AC1 16 BGM A 2 ? BGM A 2   . ? 7_556  ? 
4  AC1 16 BGM A 2 ? BGM A 2   . ? 1_555  ? 
5  AC1 16 BGM A 2 ? BGM A 2   . ? 4_555  ? 
6  AC1 16 BGM A 2 ? BGM A 2   . ? 5_556  ? 
7  AC1 16 BGM A 2 ? BGM A 2   . ? 2_555  ? 
8  AC1 16 BGM A 2 ? BGM A 2   . ? 8_556  ? 
9  AC1 16 NA  C . ? NA  A 102 . ? 4_555  ? 
10 AC1 16 NA  C . ? NA  A 102 . ? 5_556  ? 
11 AC1 16 NA  C . ? NA  A 102 . ? 6_556  ? 
12 AC1 16 NA  C . ? NA  A 102 . ? 7_556  ? 
13 AC1 16 NA  C . ? NA  A 102 . ? 8_556  ? 
14 AC1 16 NA  C . ? NA  A 102 . ? 3_555  ? 
15 AC1 16 NA  C . ? NA  A 102 . ? 2_555  ? 
16 AC1 16 NA  C . ? NA  A 102 . ? 1_555  ? 
17 AC2 20 BGM A 2 ? BGM A 2   . ? 3_555  ? 
18 AC2 20 BGM A 2 ? BGM A 2   . ? 1_555  ? 
19 AC2 20 BGM A 2 ? BGM A 2   . ? 2_555  ? 
20 AC2 20 BGM A 2 ? BGM A 2   . ? 4_555  ? 
21 AC2 20 A   A 3 ? A   A 3   . ? 3_555  ? 
22 AC2 20 A   A 3 ? A   A 3   . ? 2_555  ? 
23 AC2 20 A   A 3 ? A   A 3   . ? 1_555  ? 
24 AC2 20 A   A 3 ? A   A 3   . ? 4_555  ? 
25 AC2 20 NA  B . ? NA  A 101 . ? 4_555  ? 
26 AC2 20 NA  B . ? NA  A 101 . ? 3_555  ? 
27 AC2 20 NA  B . ? NA  A 101 . ? 1_555  ? 
28 AC2 20 NA  B . ? NA  A 101 . ? 2_555  ? 
29 AC2 20 NA  B . ? NA  A 101 . ? 5_556  ? 
30 AC2 20 NA  B . ? NA  A 101 . ? 6_556  ? 
31 AC2 20 NA  B . ? NA  A 101 . ? 7_556  ? 
32 AC2 20 NA  B . ? NA  A 101 . ? 8_556  ? 
33 AC2 20 NA  D . ? NA  A 103 . ? 4_555  ? 
34 AC2 20 NA  D . ? NA  A 103 . ? 3_555  ? 
35 AC2 20 NA  D . ? NA  A 103 . ? 2_555  ? 
36 AC2 20 NA  D . ? NA  A 103 . ? 1_555  ? 
37 AC3 16 A   A 3 ? A   A 3   . ? 3_555  ? 
38 AC3 16 A   A 3 ? A   A 3   . ? 1_555  ? 
39 AC3 16 A   A 3 ? A   A 3   . ? 2_555  ? 
40 AC3 16 A   A 3 ? A   A 3   . ? 4_555  ? 
41 AC3 16 G   A 4 ? G   A 4   . ? 4_555  ? 
42 AC3 16 G   A 4 ? G   A 4   . ? 1_555  ? 
43 AC3 16 G   A 4 ? G   A 4   . ? 2_555  ? 
44 AC3 16 G   A 4 ? G   A 4   . ? 3_555  ? 
45 AC3 16 NA  C . ? NA  A 102 . ? 3_555  ? 
46 AC3 16 NA  C . ? NA  A 102 . ? 1_555  ? 
47 AC3 16 NA  C . ? NA  A 102 . ? 2_555  ? 
48 AC3 16 NA  C . ? NA  A 102 . ? 4_555  ? 
49 AC3 16 NA  E . ? NA  A 104 . ? 4_555  ? 
50 AC3 16 NA  E . ? NA  A 104 . ? 3_555  ? 
51 AC3 16 NA  E . ? NA  A 104 . ? 2_555  ? 
52 AC3 16 NA  E . ? NA  A 104 . ? 1_555  ? 
53 AC4 16 G   A 4 ? G   A 4   . ? 2_555  ? 
54 AC4 16 G   A 4 ? G   A 4   . ? 4_555  ? 
55 AC4 16 G   A 4 ? G   A 4   . ? 1_555  ? 
56 AC4 16 G   A 4 ? G   A 4   . ? 3_555  ? 
57 AC4 16 G   A 5 ? G   A 5   . ? 2_555  ? 
58 AC4 16 G   A 5 ? G   A 5   . ? 4_555  ? 
59 AC4 16 G   A 5 ? G   A 5   . ? 1_555  ? 
60 AC4 16 G   A 5 ? G   A 5   . ? 3_555  ? 
61 AC4 16 NA  D . ? NA  A 103 . ? 1_555  ? 
62 AC4 16 NA  D . ? NA  A 103 . ? 2_555  ? 
63 AC4 16 NA  D . ? NA  A 103 . ? 3_555  ? 
64 AC4 16 NA  D . ? NA  A 103 . ? 4_555  ? 
65 AC4 16 NA  F . ? NA  A 105 . ? 4_555  ? 
66 AC4 16 NA  F . ? NA  A 105 . ? 3_555  ? 
67 AC4 16 NA  F . ? NA  A 105 . ? 2_555  ? 
68 AC4 16 NA  F . ? NA  A 105 . ? 1_555  ? 
69 AC5 12 G   A 5 ? G   A 5   . ? 2_555  ? 
70 AC5 12 G   A 5 ? G   A 5   . ? 3_555  ? 
71 AC5 12 G   A 5 ? G   A 5   . ? 1_555  ? 
72 AC5 12 G   A 5 ? G   A 5   . ? 4_555  ? 
73 AC5 12 U   A 6 ? U   A 6   . ? 2_555  ? 
74 AC5 12 U   A 6 ? U   A 6   . ? 1_555  ? 
75 AC5 12 U   A 6 ? U   A 6   . ? 3_555  ? 
76 AC5 12 U   A 6 ? U   A 6   . ? 4_555  ? 
77 AC5 12 NA  E . ? NA  A 104 . ? 4_555  ? 
78 AC5 12 NA  E . ? NA  A 104 . ? 3_555  ? 
79 AC5 12 NA  E . ? NA  A 104 . ? 2_555  ? 
80 AC5 12 NA  E . ? NA  A 104 . ? 1_555  ? 
81 AC6 12 BGM A 2 ? BGM A 2   . ? 1_555  ? 
82 AC6 12 BGM A 2 ? BGM A 2   . ? 8_556  ? 
83 AC6 12 A   A 3 ? A   A 3   . ? 8_556  ? 
84 AC6 12 A   A 3 ? A   A 3   . ? 1_555  ? 
85 AC6 12 G   A 5 ? G   A 5   . ? 14_455 ? 
86 AC6 12 G   A 5 ? G   A 5   . ? 12_455 ? 
87 AC6 12 U   A 6 ? U   A 6   . ? 12_455 ? 
88 AC6 12 U   A 6 ? U   A 6   . ? 14_455 ? 
89 AC6 12 HOH H . ? HOH A 308 . ? 8_556  ? 
90 AC6 12 HOH H . ? HOH A 308 . ? 1_555  ? 
91 AC6 12 HOH H . ? HOH A 314 . ? 14_455 ? 
92 AC6 12 HOH H . ? HOH A 314 . ? 12_455 ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "C2'" A U 6 ? ? "C3'" A U 6 ? ? "O3'" A U 6 ? ? 142.76 113.70 29.06  1.60 N 
2 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 95.43  105.80 -10.37 1.00 N 
3 1 N1    A U 6 ? ? "C1'" A U 6 ? ? "C2'" A U 6 ? ? 80.07  112.00 -31.93 1.10 N 
4 1 "C1'" A U 6 ? ? "C2'" A U 6 ? ? "O2'" A U 6 ? ? 133.32 110.60 22.72  3.00 N 
5 1 "C3'" A U 6 ? ? "C2'" A U 6 ? ? "O2'" A U 6 ? ? 82.44  113.30 -30.86 2.90 N 
# 
_pdbx_validate_planes.id              1 
_pdbx_validate_planes.PDB_model_num   1 
_pdbx_validate_planes.auth_comp_id    G 
_pdbx_validate_planes.auth_asym_id    A 
_pdbx_validate_planes.auth_seq_id     4 
_pdbx_validate_planes.PDB_ins_code    ? 
_pdbx_validate_planes.label_alt_id    ? 
_pdbx_validate_planes.rmsd            0.064 
_pdbx_validate_planes.type            'SIDE CHAIN' 
# 
_pdbx_struct_mod_residue.id               1 
_pdbx_struct_mod_residue.label_asym_id    A 
_pdbx_struct_mod_residue.label_comp_id    BGM 
_pdbx_struct_mod_residue.label_seq_id     2 
_pdbx_struct_mod_residue.auth_asym_id     A 
_pdbx_struct_mod_residue.auth_comp_id     BGM 
_pdbx_struct_mod_residue.auth_seq_id      2 
_pdbx_struct_mod_residue.PDB_ins_code     ? 
_pdbx_struct_mod_residue.parent_comp_id   DG 
_pdbx_struct_mod_residue.details          ? 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 A NA  101 ? B NA  . 
2 1 A NA  102 ? C NA  . 
3 1 A NA  103 ? D NA  . 
4 1 A NA  104 ? E NA  . 
5 1 A NA  105 ? F NA  . 
6 1 A NCO 201 ? G NCO . 
7 1 A HOH 305 ? H HOH . 
8 1 A HOH 315 ? H HOH . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O  N N 1   
A   P      P  N N 2   
A   OP1    O  N N 3   
A   OP2    O  N N 4   
A   "O5'"  O  N N 5   
A   "C5'"  C  N N 6   
A   "C4'"  C  N R 7   
A   "O4'"  O  N N 8   
A   "C3'"  C  N S 9   
A   "O3'"  O  N N 10  
A   "C2'"  C  N R 11  
A   "O2'"  O  N N 12  
A   "C1'"  C  N R 13  
A   N9     N  Y N 14  
A   C8     C  Y N 15  
A   N7     N  Y N 16  
A   C5     C  Y N 17  
A   C6     C  Y N 18  
A   N6     N  N N 19  
A   N1     N  Y N 20  
A   C2     C  Y N 21  
A   N3     N  Y N 22  
A   C4     C  Y N 23  
A   HOP3   H  N N 24  
A   HOP2   H  N N 25  
A   "H5'"  H  N N 26  
A   "H5''" H  N N 27  
A   "H4'"  H  N N 28  
A   "H3'"  H  N N 29  
A   "HO3'" H  N N 30  
A   "H2'"  H  N N 31  
A   "HO2'" H  N N 32  
A   "H1'"  H  N N 33  
A   H8     H  N N 34  
A   H61    H  N N 35  
A   H62    H  N N 36  
A   H2     H  N N 37  
BGM P      P  N N 38  
BGM OP1    O  N N 39  
BGM OP2    O  N N 40  
BGM "O5'"  O  N N 41  
BGM "C5'"  C  N N 42  
BGM "C4'"  C  N R 43  
BGM "O4'"  O  N N 44  
BGM "C1'"  C  N R 45  
BGM N9     N  Y N 46  
BGM C8     C  Y N 47  
BGM N7     N  Y N 48  
BGM C5     C  Y N 49  
BGM C4     C  Y N 50  
BGM N3     N  N N 51  
BGM C2     C  N N 52  
BGM N2     N  N N 53  
BGM N1     N  N N 54  
BGM C6     C  N N 55  
BGM O6     O  N N 56  
BGM "C2'"  C  N N 57  
BGM "C3'"  C  N S 58  
BGM "O3'"  O  N N 59  
BGM OP3    O  N N 60  
BGM BR     BR N N 61  
BGM HOP2   H  N N 62  
BGM "H5'"  H  N N 63  
BGM "H5''" H  N N 64  
BGM "H4'"  H  N N 65  
BGM "H1'"  H  N N 66  
BGM H21    H  N N 67  
BGM H22    H  N N 68  
BGM H1     H  N N 69  
BGM "H2'"  H  N N 70  
BGM "H2''" H  N N 71  
BGM "H3'"  H  N N 72  
BGM "HO3'" H  N N 73  
BGM HOP3   H  N N 74  
G   OP3    O  N N 75  
G   P      P  N N 76  
G   OP1    O  N N 77  
G   OP2    O  N N 78  
G   "O5'"  O  N N 79  
G   "C5'"  C  N N 80  
G   "C4'"  C  N R 81  
G   "O4'"  O  N N 82  
G   "C3'"  C  N S 83  
G   "O3'"  O  N N 84  
G   "C2'"  C  N R 85  
G   "O2'"  O  N N 86  
G   "C1'"  C  N R 87  
G   N9     N  Y N 88  
G   C8     C  Y N 89  
G   N7     N  Y N 90  
G   C5     C  Y N 91  
G   C6     C  N N 92  
G   O6     O  N N 93  
G   N1     N  N N 94  
G   C2     C  N N 95  
G   N2     N  N N 96  
G   N3     N  N N 97  
G   C4     C  Y N 98  
G   HOP3   H  N N 99  
G   HOP2   H  N N 100 
G   "H5'"  H  N N 101 
G   "H5''" H  N N 102 
G   "H4'"  H  N N 103 
G   "H3'"  H  N N 104 
G   "HO3'" H  N N 105 
G   "H2'"  H  N N 106 
G   "HO2'" H  N N 107 
G   "H1'"  H  N N 108 
G   H8     H  N N 109 
G   H1     H  N N 110 
G   H21    H  N N 111 
G   H22    H  N N 112 
HOH O      O  N N 113 
HOH H1     H  N N 114 
HOH H2     H  N N 115 
NA  NA     NA N N 116 
NCO CO     CO N N 117 
NCO N1     N  N N 118 
NCO N2     N  N N 119 
NCO N3     N  N N 120 
NCO N4     N  N N 121 
NCO N5     N  N N 122 
NCO N6     N  N N 123 
NCO HN11   H  N N 124 
NCO HN12   H  N N 125 
NCO HN13   H  N N 126 
NCO HN21   H  N N 127 
NCO HN22   H  N N 128 
NCO HN23   H  N N 129 
NCO HN31   H  N N 130 
NCO HN32   H  N N 131 
NCO HN33   H  N N 132 
NCO HN41   H  N N 133 
NCO HN42   H  N N 134 
NCO HN43   H  N N 135 
NCO HN51   H  N N 136 
NCO HN52   H  N N 137 
NCO HN53   H  N N 138 
NCO HN61   H  N N 139 
NCO HN62   H  N N 140 
NCO HN63   H  N N 141 
U   OP3    O  N N 142 
U   P      P  N N 143 
U   OP1    O  N N 144 
U   OP2    O  N N 145 
U   "O5'"  O  N N 146 
U   "C5'"  C  N N 147 
U   "C4'"  C  N R 148 
U   "O4'"  O  N N 149 
U   "C3'"  C  N S 150 
U   "O3'"  O  N N 151 
U   "C2'"  C  N R 152 
U   "O2'"  O  N N 153 
U   "C1'"  C  N R 154 
U   N1     N  N N 155 
U   C2     C  N N 156 
U   O2     O  N N 157 
U   N3     N  N N 158 
U   C4     C  N N 159 
U   O4     O  N N 160 
U   C5     C  N N 161 
U   C6     C  N N 162 
U   HOP3   H  N N 163 
U   HOP2   H  N N 164 
U   "H5'"  H  N N 165 
U   "H5''" H  N N 166 
U   "H4'"  H  N N 167 
U   "H3'"  H  N N 168 
U   "HO3'" H  N N 169 
U   "H2'"  H  N N 170 
U   "HO2'" H  N N 171 
U   "H1'"  H  N N 172 
U   H3     H  N N 173 
U   H5     H  N N 174 
U   H6     H  N N 175 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
BGM P     OP1    doub N N 40  
BGM P     OP2    sing N N 41  
BGM P     "O5'"  sing N N 42  
BGM P     OP3    sing N N 43  
BGM OP2   HOP2   sing N N 44  
BGM "O5'" "C5'"  sing N N 45  
BGM "C5'" "C4'"  sing N N 46  
BGM "C5'" "H5'"  sing N N 47  
BGM "C5'" "H5''" sing N N 48  
BGM "C4'" "O4'"  sing N N 49  
BGM "C4'" "C3'"  sing N N 50  
BGM "C4'" "H4'"  sing N N 51  
BGM "O4'" "C1'"  sing N N 52  
BGM "C1'" N9     sing N N 53  
BGM "C1'" "C2'"  sing N N 54  
BGM "C1'" "H1'"  sing N N 55  
BGM N9    C8     sing Y N 56  
BGM N9    C4     sing Y N 57  
BGM C8    N7     doub Y N 58  
BGM C8    BR     sing N N 59  
BGM N7    C5     sing Y N 60  
BGM C5    C4     doub Y N 61  
BGM C5    C6     sing N N 62  
BGM C4    N3     sing N N 63  
BGM N3    C2     doub N N 64  
BGM C2    N2     sing N N 65  
BGM C2    N1     sing N N 66  
BGM N2    H21    sing N N 67  
BGM N2    H22    sing N N 68  
BGM N1    C6     sing N N 69  
BGM N1    H1     sing N N 70  
BGM C6    O6     doub N N 71  
BGM "C2'" "C3'"  sing N N 72  
BGM "C2'" "H2'"  sing N N 73  
BGM "C2'" "H2''" sing N N 74  
BGM "C3'" "O3'"  sing N N 75  
BGM "C3'" "H3'"  sing N N 76  
BGM "O3'" "HO3'" sing N N 77  
BGM OP3   HOP3   sing N N 78  
G   OP3   P      sing N N 79  
G   OP3   HOP3   sing N N 80  
G   P     OP1    doub N N 81  
G   P     OP2    sing N N 82  
G   P     "O5'"  sing N N 83  
G   OP2   HOP2   sing N N 84  
G   "O5'" "C5'"  sing N N 85  
G   "C5'" "C4'"  sing N N 86  
G   "C5'" "H5'"  sing N N 87  
G   "C5'" "H5''" sing N N 88  
G   "C4'" "O4'"  sing N N 89  
G   "C4'" "C3'"  sing N N 90  
G   "C4'" "H4'"  sing N N 91  
G   "O4'" "C1'"  sing N N 92  
G   "C3'" "O3'"  sing N N 93  
G   "C3'" "C2'"  sing N N 94  
G   "C3'" "H3'"  sing N N 95  
G   "O3'" "HO3'" sing N N 96  
G   "C2'" "O2'"  sing N N 97  
G   "C2'" "C1'"  sing N N 98  
G   "C2'" "H2'"  sing N N 99  
G   "O2'" "HO2'" sing N N 100 
G   "C1'" N9     sing N N 101 
G   "C1'" "H1'"  sing N N 102 
G   N9    C8     sing Y N 103 
G   N9    C4     sing Y N 104 
G   C8    N7     doub Y N 105 
G   C8    H8     sing N N 106 
G   N7    C5     sing Y N 107 
G   C5    C6     sing N N 108 
G   C5    C4     doub Y N 109 
G   C6    O6     doub N N 110 
G   C6    N1     sing N N 111 
G   N1    C2     sing N N 112 
G   N1    H1     sing N N 113 
G   C2    N2     sing N N 114 
G   C2    N3     doub N N 115 
G   N2    H21    sing N N 116 
G   N2    H22    sing N N 117 
G   N3    C4     sing N N 118 
HOH O     H1     sing N N 119 
HOH O     H2     sing N N 120 
NCO CO    N1     sing N N 121 
NCO CO    N2     sing N N 122 
NCO CO    N3     sing N N 123 
NCO CO    N4     sing N N 124 
NCO CO    N5     sing N N 125 
NCO CO    N6     sing N N 126 
NCO N1    HN11   sing N N 127 
NCO N1    HN12   sing N N 128 
NCO N1    HN13   sing N N 129 
NCO N2    HN21   sing N N 130 
NCO N2    HN22   sing N N 131 
NCO N2    HN23   sing N N 132 
NCO N3    HN31   sing N N 133 
NCO N3    HN32   sing N N 134 
NCO N3    HN33   sing N N 135 
NCO N4    HN41   sing N N 136 
NCO N4    HN42   sing N N 137 
NCO N4    HN43   sing N N 138 
NCO N5    HN51   sing N N 139 
NCO N5    HN52   sing N N 140 
NCO N5    HN53   sing N N 141 
NCO N6    HN61   sing N N 142 
NCO N6    HN62   sing N N 143 
NCO N6    HN63   sing N N 144 
U   OP3   P      sing N N 145 
U   OP3   HOP3   sing N N 146 
U   P     OP1    doub N N 147 
U   P     OP2    sing N N 148 
U   P     "O5'"  sing N N 149 
U   OP2   HOP2   sing N N 150 
U   "O5'" "C5'"  sing N N 151 
U   "C5'" "C4'"  sing N N 152 
U   "C5'" "H5'"  sing N N 153 
U   "C5'" "H5''" sing N N 154 
U   "C4'" "O4'"  sing N N 155 
U   "C4'" "C3'"  sing N N 156 
U   "C4'" "H4'"  sing N N 157 
U   "O4'" "C1'"  sing N N 158 
U   "C3'" "O3'"  sing N N 159 
U   "C3'" "C2'"  sing N N 160 
U   "C3'" "H3'"  sing N N 161 
U   "O3'" "HO3'" sing N N 162 
U   "C2'" "O2'"  sing N N 163 
U   "C2'" "C1'"  sing N N 164 
U   "C2'" "H2'"  sing N N 165 
U   "O2'" "HO2'" sing N N 166 
U   "C1'" N1     sing N N 167 
U   "C1'" "H1'"  sing N N 168 
U   N1    C2     sing N N 169 
U   N1    C6     sing N N 170 
U   C2    O2     doub N N 171 
U   C2    N3     sing N N 172 
U   N3    C4     sing N N 173 
U   N3    H3     sing N N 174 
U   C4    O4     doub N N 175 
U   C4    C5     sing N N 176 
U   C5    C6     doub N N 177 
U   C5    H5     sing N N 178 
U   C6    H6     sing N N 179 
# 
_atom_sites.entry_id                    1MDG 
_atom_sites.fract_transf_matrix[1][1]   0.027812 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.027812 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.026285 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BR 
C  
CO 
N  
NA 
O  
P  
# 
loop_