data_1MEM # _entry.id 1MEM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MEM pdb_00001mem 10.2210/pdb1mem/pdb WWPDB D_1000174977 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-01-14 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2014-01-29 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Refinement description' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' Other 14 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' chem_comp_atom 2 6 'Structure model' chem_comp_bond 3 6 'Structure model' database_2 4 6 'Structure model' pdbx_database_status 5 6 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' software 7 6 'Structure model' struct_conn 8 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_database_status.process_site' 4 6 'Structure model' '_software.name' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MEM _pdbx_database_status.recvd_initial_deposition_date 1997-01-08 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Mcgrath, M.E.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of human cathepsin K complexed with a potent inhibitor.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 105 _citation.page_last 109 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9033587 _citation.pdbx_database_id_DOI 10.1038/nsb0297-105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McGrath, M.E.' 1 ? primary 'Klaus, J.L.' 2 ? primary 'Barnes, M.G.' 3 ? primary 'Bromme, D.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23523.480 1 3.4.22.38 ? ? ? 2 non-polymer syn 'N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide' 528.707 1 ? ? ? ? 3 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin X, Cathepsin O2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide' 0D6 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ASP n 1 4 SER n 1 5 VAL n 1 6 ASP n 1 7 TYR n 1 8 ARG n 1 9 LYS n 1 10 LYS n 1 11 GLY n 1 12 TYR n 1 13 VAL n 1 14 THR n 1 15 PRO n 1 16 VAL n 1 17 LYS n 1 18 ASN n 1 19 GLN n 1 20 GLY n 1 21 GLN n 1 22 CYS n 1 23 GLY n 1 24 SER n 1 25 CYS n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 SER n 1 31 VAL n 1 32 GLY n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 GLY n 1 37 GLN n 1 38 LEU n 1 39 LYS n 1 40 LYS n 1 41 LYS n 1 42 THR n 1 43 GLY n 1 44 LYS n 1 45 LEU n 1 46 LEU n 1 47 ASN n 1 48 LEU n 1 49 SER n 1 50 PRO n 1 51 GLN n 1 52 ASN n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 CYS n 1 57 VAL n 1 58 SER n 1 59 GLU n 1 60 ASN n 1 61 ASP n 1 62 GLY n 1 63 CYS n 1 64 GLY n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 MET n 1 69 THR n 1 70 ASN n 1 71 ALA n 1 72 PHE n 1 73 GLN n 1 74 TYR n 1 75 VAL n 1 76 GLN n 1 77 LYS n 1 78 ASN n 1 79 ARG n 1 80 GLY n 1 81 ILE n 1 82 ASP n 1 83 SER n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 TYR n 1 88 PRO n 1 89 TYR n 1 90 VAL n 1 91 GLY n 1 92 GLN n 1 93 GLU n 1 94 GLU n 1 95 SER n 1 96 CYS n 1 97 MET n 1 98 TYR n 1 99 ASN n 1 100 PRO n 1 101 THR n 1 102 GLY n 1 103 LYS n 1 104 ALA n 1 105 ALA n 1 106 LYS n 1 107 CYS n 1 108 ARG n 1 109 GLY n 1 110 TYR n 1 111 ARG n 1 112 GLU n 1 113 ILE n 1 114 PRO n 1 115 GLU n 1 116 GLY n 1 117 ASN n 1 118 GLU n 1 119 LYS n 1 120 ALA n 1 121 LEU n 1 122 LYS n 1 123 ARG n 1 124 ALA n 1 125 VAL n 1 126 ALA n 1 127 ARG n 1 128 VAL n 1 129 GLY n 1 130 PRO n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 ALA n 1 135 ILE n 1 136 ASP n 1 137 ALA n 1 138 SER n 1 139 LEU n 1 140 THR n 1 141 SER n 1 142 PHE n 1 143 GLN n 1 144 PHE n 1 145 TYR n 1 146 SER n 1 147 LYS n 1 148 GLY n 1 149 VAL n 1 150 TYR n 1 151 TYR n 1 152 ASP n 1 153 GLU n 1 154 SER n 1 155 CYS n 1 156 ASN n 1 157 SER n 1 158 ASP n 1 159 ASN n 1 160 LEU n 1 161 ASN n 1 162 HIS n 1 163 ALA n 1 164 VAL n 1 165 LEU n 1 166 ALA n 1 167 VAL n 1 168 GLY n 1 169 TYR n 1 170 GLY n 1 171 ILE n 1 172 GLN n 1 173 LYS n 1 174 GLY n 1 175 ASN n 1 176 LYS n 1 177 HIS n 1 178 TRP n 1 179 ILE n 1 180 ILE n 1 181 LYS n 1 182 ASN n 1 183 SER n 1 184 TRP n 1 185 GLY n 1 186 GLU n 1 187 ASN n 1 188 TRP n 1 189 GLY n 1 190 ASN n 1 191 LYS n 1 192 GLY n 1 193 TYR n 1 194 ILE n 1 195 LEU n 1 196 MET n 1 197 ALA n 1 198 ARG n 1 199 ASN n 1 200 LYS n 1 201 ASN n 1 202 ASN n 1 203 ALA n 1 204 CYS n 1 205 GLY n 1 206 ILE n 1 207 ALA n 1 208 ASN n 1 209 LEU n 1 210 ALA n 1 211 SER n 1 212 PHE n 1 213 PRO n 1 214 LYS n 1 215 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTSK, CTSO, CTSO2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 644223 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0D6 peptide-like . 'N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide' APC3328 'C28 H40 N4 O4 S' 528.707 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ARG 79 78 78 ARG ARG A A n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 TYR 89 88 88 TYR TYR A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 GLN 92 91 91 GLN GLN A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 MET 97 96 96 MET MET A . n A 1 98 TYR 98 97 97 TYR TYR A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 VAL 128 127 127 VAL VAL A A n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 LYS 147 146 146 LYS LYS A . n A 1 148 GLY 148 147 147 GLY GLY A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 TYR 150 149 149 TYR TYR A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 ASP 152 150 150 ASP ASP A A n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 SER 154 152 152 SER SER A . n A 1 155 CYS 155 153 153 CYS CYS A . n A 1 156 ASN 156 154 154 ASN ASN A . n A 1 157 SER 157 155 155 SER SER A . n A 1 158 ASP 158 156 156 ASP ASP A . n A 1 159 ASN 159 156 156 ASN ASN A A n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 ASN 161 158 158 ASN ASN A . n A 1 162 HIS 162 159 159 HIS HIS A . n A 1 163 ALA 163 160 160 ALA ALA A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 ALA 166 163 163 ALA ALA A . n A 1 167 VAL 167 164 164 VAL VAL A . n A 1 168 GLY 168 165 165 GLY GLY A . n A 1 169 TYR 169 166 166 TYR TYR A . n A 1 170 GLY 170 167 167 GLY GLY A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 GLN 172 168 168 GLN GLN A A n A 1 173 LYS 173 168 168 LYS LYS A B n A 1 174 GLY 174 168 168 GLY GLY A C n A 1 175 ASN 175 168 168 ASN ASN A D n A 1 176 LYS 176 169 169 LYS LYS A . n A 1 177 HIS 177 170 170 HIS HIS A . n A 1 178 TRP 178 171 171 TRP TRP A . n A 1 179 ILE 179 172 172 ILE ILE A . n A 1 180 ILE 180 173 173 ILE ILE A . n A 1 181 LYS 181 174 174 LYS LYS A . n A 1 182 ASN 182 175 175 ASN ASN A . n A 1 183 SER 183 176 176 SER SER A . n A 1 184 TRP 184 177 177 TRP TRP A . n A 1 185 GLY 185 178 178 GLY GLY A . n A 1 186 GLU 186 179 179 GLU GLU A . n A 1 187 ASN 187 180 180 ASN ASN A . n A 1 188 TRP 188 181 181 TRP TRP A . n A 1 189 GLY 189 182 182 GLY GLY A . n A 1 190 ASN 190 183 183 ASN ASN A . n A 1 191 LYS 191 184 184 LYS LYS A . n A 1 192 GLY 192 185 185 GLY GLY A . n A 1 193 TYR 193 186 186 TYR TYR A . n A 1 194 ILE 194 187 187 ILE ILE A . n A 1 195 LEU 195 188 188 LEU LEU A . n A 1 196 MET 196 189 189 MET MET A . n A 1 197 ALA 197 190 190 ALA ALA A . n A 1 198 ARG 198 191 191 ARG ARG A . n A 1 199 ASN 199 192 192 ASN ASN A . n A 1 200 LYS 200 193 193 LYS LYS A . n A 1 201 ASN 201 194 194 ASN ASN A . n A 1 202 ASN 202 198 198 ASN ASN A . n A 1 203 ALA 203 199 199 ALA ALA A . n A 1 204 CYS 204 200 200 CYS CYS A . n A 1 205 GLY 205 201 201 GLY GLY A . n A 1 206 ILE 206 202 202 ILE ILE A . n A 1 207 ALA 207 203 203 ALA ALA A . n A 1 208 ASN 208 204 204 ASN ASN A . n A 1 209 LEU 209 205 205 LEU LEU A . n A 1 210 ALA 210 206 206 ALA ALA A . n A 1 211 SER 211 207 207 SER SER A . n A 1 212 PHE 212 208 208 PHE PHE A . n A 1 213 PRO 213 209 209 PRO PRO A . n A 1 214 LYS 214 210 210 LYS LYS A . n A 1 215 MET 215 211 211 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0D6 1 280 280 0D6 BZP A . C 3 HOH 1 285 1 HOH HOH A . C 3 HOH 2 286 2 HOH HOH A . C 3 HOH 3 287 3 HOH HOH A . C 3 HOH 4 288 4 HOH HOH A . C 3 HOH 5 289 5 HOH HOH A . C 3 HOH 6 290 6 HOH HOH A . C 3 HOH 7 291 7 HOH HOH A . C 3 HOH 8 292 8 HOH HOH A . C 3 HOH 9 293 9 HOH HOH A . C 3 HOH 10 294 10 HOH HOH A . C 3 HOH 11 295 11 HOH HOH A . C 3 HOH 12 296 12 HOH HOH A . C 3 HOH 13 297 13 HOH HOH A . C 3 HOH 14 298 14 HOH HOH A . C 3 HOH 15 299 15 HOH HOH A . C 3 HOH 16 300 16 HOH HOH A . C 3 HOH 17 301 17 HOH HOH A . C 3 HOH 18 302 18 HOH HOH A . C 3 HOH 19 303 19 HOH HOH A . C 3 HOH 20 304 20 HOH HOH A . C 3 HOH 21 305 21 HOH HOH A . C 3 HOH 22 306 22 HOH HOH A . C 3 HOH 23 307 23 HOH HOH A . C 3 HOH 24 308 24 HOH HOH A . C 3 HOH 25 309 25 HOH HOH A . C 3 HOH 26 310 26 HOH HOH A . C 3 HOH 27 311 27 HOH HOH A . C 3 HOH 28 312 28 HOH HOH A . C 3 HOH 29 313 29 HOH HOH A . C 3 HOH 30 314 30 HOH HOH A . C 3 HOH 31 315 31 HOH HOH A . C 3 HOH 32 316 32 HOH HOH A . C 3 HOH 33 317 33 HOH HOH A . C 3 HOH 34 318 34 HOH HOH A . C 3 HOH 35 319 35 HOH HOH A . C 3 HOH 36 320 36 HOH HOH A . C 3 HOH 37 321 37 HOH HOH A . C 3 HOH 38 322 38 HOH HOH A . C 3 HOH 39 323 39 HOH HOH A . C 3 HOH 40 324 40 HOH HOH A . C 3 HOH 41 325 41 HOH HOH A . C 3 HOH 42 326 42 HOH HOH A . C 3 HOH 43 327 43 HOH HOH A . C 3 HOH 44 328 44 HOH HOH A . C 3 HOH 45 329 45 HOH HOH A . C 3 HOH 46 330 46 HOH HOH A . C 3 HOH 47 331 47 HOH HOH A . C 3 HOH 48 332 48 HOH HOH A . C 3 HOH 49 333 49 HOH HOH A . C 3 HOH 50 334 50 HOH HOH A . C 3 HOH 51 335 51 HOH HOH A . C 3 HOH 52 336 52 HOH HOH A . C 3 HOH 53 337 53 HOH HOH A . C 3 HOH 54 338 54 HOH HOH A . C 3 HOH 55 339 55 HOH HOH A . C 3 HOH 56 340 56 HOH HOH A . C 3 HOH 57 341 57 HOH HOH A . C 3 HOH 58 342 58 HOH HOH A . C 3 HOH 59 343 59 HOH HOH A . C 3 HOH 60 344 60 HOH HOH A . C 3 HOH 61 345 61 HOH HOH A . C 3 HOH 62 346 62 HOH HOH A . C 3 HOH 63 347 63 HOH HOH A . C 3 HOH 64 348 64 HOH HOH A . C 3 HOH 65 349 65 HOH HOH A . C 3 HOH 66 350 66 HOH HOH A . C 3 HOH 67 351 67 HOH HOH A . C 3 HOH 68 352 68 HOH HOH A . C 3 HOH 69 353 69 HOH HOH A . C 3 HOH 70 354 70 HOH HOH A . C 3 HOH 71 355 71 HOH HOH A . C 3 HOH 72 356 72 HOH HOH A . C 3 HOH 73 357 73 HOH HOH A . C 3 HOH 74 358 74 HOH HOH A . C 3 HOH 75 359 75 HOH HOH A . C 3 HOH 76 360 76 HOH HOH A . C 3 HOH 77 361 77 HOH HOH A . C 3 HOH 78 362 78 HOH HOH A . C 3 HOH 79 363 79 HOH HOH A . C 3 HOH 80 364 80 HOH HOH A . C 3 HOH 81 365 81 HOH HOH A . C 3 HOH 82 366 82 HOH HOH A . C 3 HOH 83 367 83 HOH HOH A . C 3 HOH 84 368 84 HOH HOH A . C 3 HOH 85 369 85 HOH HOH A . C 3 HOH 86 370 86 HOH HOH A . C 3 HOH 87 371 87 HOH HOH A . C 3 HOH 88 372 88 HOH HOH A . C 3 HOH 89 373 89 HOH HOH A . C 3 HOH 90 374 90 HOH HOH A . C 3 HOH 91 375 91 HOH HOH A . C 3 HOH 92 376 92 HOH HOH A . C 3 HOH 93 377 93 HOH HOH A . C 3 HOH 94 378 94 HOH HOH A . C 3 HOH 95 379 95 HOH HOH A . C 3 HOH 96 380 96 HOH HOH A . C 3 HOH 97 381 97 HOH HOH A . C 3 HOH 98 382 98 HOH HOH A . C 3 HOH 99 383 99 HOH HOH A . C 3 HOH 100 384 100 HOH HOH A . C 3 HOH 101 385 101 HOH HOH A . C 3 HOH 102 386 102 HOH HOH A . C 3 HOH 103 387 103 HOH HOH A . C 3 HOH 104 388 104 HOH HOH A . C 3 HOH 105 389 105 HOH HOH A . C 3 HOH 106 390 106 HOH HOH A . C 3 HOH 107 391 107 HOH HOH A . C 3 HOH 108 392 108 HOH HOH A . C 3 HOH 109 393 109 HOH HOH A . C 3 HOH 110 394 110 HOH HOH A . C 3 HOH 111 395 111 HOH HOH A . C 3 HOH 112 396 112 HOH HOH A . C 3 HOH 113 397 113 HOH HOH A . C 3 HOH 114 398 114 HOH HOH A . C 3 HOH 115 399 115 HOH HOH A . C 3 HOH 116 400 116 HOH HOH A . C 3 HOH 117 401 117 HOH HOH A . C 3 HOH 118 402 118 HOH HOH A . C 3 HOH 119 403 119 HOH HOH A . C 3 HOH 120 404 120 HOH HOH A . C 3 HOH 121 405 121 HOH HOH A . C 3 HOH 122 406 122 HOH HOH A . C 3 HOH 123 407 123 HOH HOH A . C 3 HOH 124 408 124 HOH HOH A . C 3 HOH 125 409 125 HOH HOH A . C 3 HOH 126 410 126 HOH HOH A . C 3 HOH 127 411 127 HOH HOH A . C 3 HOH 128 412 128 HOH HOH A . C 3 HOH 129 413 129 HOH HOH A . C 3 HOH 130 414 130 HOH HOH A . C 3 HOH 131 415 131 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 4 ? OG ? A SER 4 OG 2 1 Y 1 A LYS 41 ? CG ? A LYS 41 CG 3 1 Y 1 A LYS 41 ? CD ? A LYS 41 CD 4 1 Y 1 A LYS 41 ? CE ? A LYS 41 CE 5 1 Y 1 A LYS 41 ? NZ ? A LYS 41 NZ 6 1 Y 1 A LYS 44 ? CG ? A LYS 44 CG 7 1 Y 1 A LYS 44 ? CD ? A LYS 44 CD 8 1 Y 1 A LYS 44 ? CE ? A LYS 44 CE 9 1 Y 1 A LYS 44 ? NZ ? A LYS 44 NZ 10 1 Y 1 A GLU 59 ? CG ? A GLU 59 CG 11 1 Y 1 A GLU 59 ? CD ? A GLU 59 CD 12 1 Y 1 A GLU 59 ? OE1 ? A GLU 59 OE1 13 1 Y 1 A GLU 59 ? OE2 ? A GLU 59 OE2 14 1 Y 1 A LYS 77 ? CG ? A LYS 77 CG 15 1 Y 1 A LYS 77 ? CD ? A LYS 77 CD 16 1 Y 1 A LYS 77 ? CE ? A LYS 77 CE 17 1 Y 1 A LYS 77 ? NZ ? A LYS 77 NZ 18 1 Y 1 A LYS 119 ? CG ? A LYS 119 CG 19 1 Y 1 A LYS 119 ? CD ? A LYS 119 CD 20 1 Y 1 A LYS 119 ? CE ? A LYS 119 CE 21 1 Y 1 A LYS 119 ? NZ ? A LYS 119 NZ 22 1 Y 1 A ARG 127 ? CG ? A ARG 127 CG 23 1 Y 1 A ARG 127 ? CD ? A ARG 127 CD 24 1 Y 1 A ARG 127 ? NE ? A ARG 127 NE 25 1 Y 1 A ARG 127 ? CZ ? A ARG 127 CZ 26 1 Y 1 A ARG 127 ? NH1 ? A ARG 127 NH1 27 1 Y 1 A ARG 127 ? NH2 ? A ARG 127 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal bioteX 'data collection' . ? 1 MSC 'data collection' . ? 2 bioteX 'data reduction' '(MSC)' ? 3 MSC 'data reduction' . ? 4 X-PLOR 'model building' 3.1 ? 5 X-PLOR refinement 3.1 ? 6 bioteX 'data scaling' . ? 7 X-PLOR phasing 3.1 ? 8 # _cell.entry_id 1MEM _cell.length_a 40.820 _cell.length_b 50.040 _cell.length_c 105.920 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1MEM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1MEM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 49. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MG FORMATE, UNBUFFERED, pH 6.0' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1996-03 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1MEM _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.8 _reflns.number_obs 20293 _reflns.number_all ? _reflns.percent_possible_obs 93 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_sigmaI 15 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 68. _reflns_shell.Rmerge_I_obs 0.17 _reflns_shell.pdbx_Rsym_value 0.17 _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1MEM _refine.ls_number_reflns_obs 16945 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1000000.0 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 93. _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'HOMOLOGY MODEL FOR CATHEPSIN K (MEM, UNPUBLISHED RESULTS)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MEM _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1622 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1790 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.72 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.19 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.number_reflns_R_work 1746 _refine_ls_shell.R_factor_R_work 0.183 _refine_ls_shell.percent_reflns_obs 68. _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 ? ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1MEM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MEM _struct.title 'Crystal structure of Cathepsin K complexed with a potent vinyl sulfone inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MEM _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;OSTEOPOROSIS, PROTEASE, DRUG DESIGN, CYSTEINE, OSTEOCLAST, Disease mutation, Disulfide bond, Glycoprotein, Lysosome, Thiol protease, Zymogen, HYDROLASE-HYDROLASE INHIBITOR complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL NHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _struct_ref.pdbx_align_begin 115 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MEM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 215 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 115 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 211 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 25 ? THR A 42 ? CYS A 25 THR A 42 1 ? 18 HELX_P HELX_P2 2 PRO A 50 ? CYS A 56 ? PRO A 50 CYS A 56 1 ? 7 HELX_P HELX_P3 3 GLY A 62 ? GLY A 64 ? GLY A 62 GLY A 64 5 ? 3 HELX_P HELX_P4 4 MET A 68 ? ASN A 78 ? MET A 68 ASN A 78 1 ? 11 HELX_P HELX_P5 5 PRO A 100 ? GLY A 102 ? PRO A 99 GLY A 101 5 ? 3 HELX_P HELX_P6 6 GLU A 118 ? ARG A 127 ? GLU A 118 ARG A 127 1 ? 10 HELX_P HELX_P7 7 THR A 140 ? GLN A 143 ? THR A 139 GLN A 142 1 ? 4 HELX_P HELX_P8 8 ALA A 203 ? GLY A 205 ? ALA A 199 GLY A 201 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.013 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale none ? A CYS 25 SG ? ? ? 1_555 B 0D6 . C21 ? ? A CYS 25 A 0D6 280 1_555 ? ? ? ? ? ? ? 1.827 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 110 ? GLU A 112 ? TYR A 110 GLU A 112 A 2 SER A 211 ? PRO A 213 ? SER A 207 PRO A 209 B 1 VAL A 131 ? ILE A 135 ? VAL A 130 ILE A 134 B 2 HIS A 162 ? GLN A 172 A HIS A 159 GLN A 168 B 3 ASN A 175 D LYS A 181 ? ASN A 168 LYS A 174 B 4 TYR A 193 ? ALA A 197 ? TYR A 186 ALA A 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 111 ? O ARG A 111 N PHE A 212 ? N PHE A 208 B 1 2 O VAL A 131 ? O VAL A 130 N ALA A 166 ? N ALA A 163 B 2 3 O LEU A 165 ? O LEU A 162 N LYS A 181 ? N LYS A 174 B 3 4 O TRP A 178 ? O TRP A 171 N MET A 196 ? N MET A 189 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 0D6 _struct_site.pdbx_auth_seq_id 280 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'BINDING SITE FOR RESIDUE 0D6 A 280' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLN A 19 ? GLN A 19 . ? 1_555 ? 2 AC1 18 GLY A 23 ? GLY A 23 . ? 1_555 ? 3 AC1 18 CYS A 25 ? CYS A 25 . ? 1_555 ? 4 AC1 18 TRP A 26 ? TRP A 26 . ? 1_555 ? 5 AC1 18 ASP A 61 ? ASP A 61 . ? 1_555 ? 6 AC1 18 CYS A 63 ? CYS A 63 . ? 1_555 ? 7 AC1 18 GLY A 64 ? GLY A 64 . ? 1_555 ? 8 AC1 18 GLY A 65 ? GLY A 65 . ? 1_555 ? 9 AC1 18 GLY A 66 ? GLY A 66 . ? 1_555 ? 10 AC1 18 TYR A 67 ? TYR A 67 . ? 1_555 ? 11 AC1 18 PHE A 144 ? PHE A 143 . ? 4_555 ? 12 AC1 18 SER A 146 ? SER A 145 . ? 4_555 ? 13 AC1 18 LYS A 147 ? LYS A 146 . ? 4_555 ? 14 AC1 18 LEU A 160 ? LEU A 157 . ? 1_555 ? 15 AC1 18 ASN A 161 ? ASN A 158 . ? 1_555 ? 16 AC1 18 HIS A 162 ? HIS A 159 . ? 1_555 ? 17 AC1 18 TRP A 184 ? TRP A 177 . ? 1_555 ? 18 AC1 18 HOH C . ? HOH A 388 . ? 4_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ1 A LYS 106 ? ? H2 A HOH 299 ? ? 1.20 2 1 HZ3 A LYS 9 ? ? H2 A HOH 349 ? ? 1.28 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SER _pdbx_validate_symm_contact.auth_seq_id_1 94 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HH22 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 108 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.60 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 107 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 107 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.712 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.100 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 24 ? ? -89.10 30.17 2 1 TYR A 86 ? ? -154.71 69.31 3 1 SER A 145 ? ? -173.80 129.04 4 1 LYS A 146 ? ? 69.34 136.15 5 1 ASN A 156 A ? -113.43 70.45 6 1 LYS A 193 ? ? -102.59 55.57 7 1 LEU A 205 ? ? -148.07 59.86 # _pdbx_molecule_features.prd_id PRD_000234 _pdbx_molecule_features.name 'N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000234 _pdbx_molecule.asym_id B # _pdbx_entry_details.entry_id 1MEM _pdbx_entry_details.nonpolymer_details ;INHIBITOR 4-METHYLPIPERAZINE-1-CARBOXYLIC ACID [1-[(3-BENZENESULFONYL-1-PHENETHYLALLYL)CARBAMOYL]-2-PHENYLETHYL]AMIDE WAS USED FOR CRYSTALLIZATION. THE C11-C21 SINGLE BOND IN 0D6 IS GENERATED AS A RESULT OF REACTION OF THE CYS 25 THIOL WITH THE OLEFINIC DOUBLE BOND OF THE INHIBIOR ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0D6 N1 N N N 1 0D6 C1 C N N 2 0D6 O1 O N N 3 0D6 C2 C N N 4 0D6 C3 C N N 5 0D6 N4 N N N 6 0D6 C5 C N N 7 0D6 C6 C N N 8 0D6 N N N N 9 0D6 CA C N S 10 0D6 C C N N 11 0D6 O O N N 12 0D6 CB C N N 13 0D6 CG C N N 14 0D6 CD1 C N N 15 0D6 CD2 C N N 16 0D6 C11 C N N 17 0D6 C21 C N N 18 0D6 C31 C N S 19 0D6 N2 N N N 20 0D6 C4 C N N 21 0D6 C51 C N N 22 0D6 "C1'" C Y N 23 0D6 "C2'" C Y N 24 0D6 "C3'" C Y N 25 0D6 "C4'" C Y N 26 0D6 "C5'" C Y N 27 0D6 "C6'" C Y N 28 0D6 C12 C Y N 29 0D6 C22 C Y N 30 0D6 C32 C Y N 31 0D6 C41 C Y N 32 0D6 S1 S N N 33 0D6 O11 O N N 34 0D6 O2 O N N 35 0D6 C52 C Y N 36 0D6 C61 C Y N 37 0D6 H21 H N N 38 0D6 H22 H N N 39 0D6 H31 H N N 40 0D6 H32 H N N 41 0D6 HN4 H N N 42 0D6 H51 H N N 43 0D6 H52 H N N 44 0D6 H61 H N N 45 0D6 H62 H N N 46 0D6 H H N N 47 0D6 HA H N N 48 0D6 HB2 H N N 49 0D6 HB3 H N N 50 0D6 HG H N N 51 0D6 HD11 H N N 52 0D6 HD12 H N N 53 0D6 HD13 H N N 54 0D6 HD21 H N N 55 0D6 HD22 H N N 56 0D6 HD23 H N N 57 0D6 H11 H N N 58 0D6 H12 H N N 59 0D6 H211 H N N 60 0D6 H221 H N N 61 0D6 H3 H N N 62 0D6 HN2 H N N 63 0D6 H41 H N N 64 0D6 H42 H N N 65 0D6 H511 H N N 66 0D6 H521 H N N 67 0D6 "H2'" H N N 68 0D6 "H3'" H N N 69 0D6 "H4'" H N N 70 0D6 "H5'" H N N 71 0D6 "H6'" H N N 72 0D6 H1 H N N 73 0D6 H2 H N N 74 0D6 H33 H N N 75 0D6 H5 H N N 76 0D6 H6 H N N 77 ALA N N N N 78 ALA CA C N S 79 ALA C C N N 80 ALA O O N N 81 ALA CB C N N 82 ALA OXT O N N 83 ALA H H N N 84 ALA H2 H N N 85 ALA HA H N N 86 ALA HB1 H N N 87 ALA HB2 H N N 88 ALA HB3 H N N 89 ALA HXT H N N 90 ARG N N N N 91 ARG CA C N S 92 ARG C C N N 93 ARG O O N N 94 ARG CB C N N 95 ARG CG C N N 96 ARG CD C N N 97 ARG NE N N N 98 ARG CZ C N N 99 ARG NH1 N N N 100 ARG NH2 N N N 101 ARG OXT O N N 102 ARG H H N N 103 ARG H2 H N N 104 ARG HA H N N 105 ARG HB2 H N N 106 ARG HB3 H N N 107 ARG HG2 H N N 108 ARG HG3 H N N 109 ARG HD2 H N N 110 ARG HD3 H N N 111 ARG HE H N N 112 ARG HH11 H N N 113 ARG HH12 H N N 114 ARG HH21 H N N 115 ARG HH22 H N N 116 ARG HXT H N N 117 ASN N N N N 118 ASN CA C N S 119 ASN C C N N 120 ASN O O N N 121 ASN CB C N N 122 ASN CG C N N 123 ASN OD1 O N N 124 ASN ND2 N N N 125 ASN OXT O N N 126 ASN H H N N 127 ASN H2 H N N 128 ASN HA H N N 129 ASN HB2 H N N 130 ASN HB3 H N N 131 ASN HD21 H N N 132 ASN HD22 H N N 133 ASN HXT H N N 134 ASP N N N N 135 ASP CA C N S 136 ASP C C N N 137 ASP O O N N 138 ASP CB C N N 139 ASP CG C N N 140 ASP OD1 O N N 141 ASP OD2 O N N 142 ASP OXT O N N 143 ASP H H N N 144 ASP H2 H N N 145 ASP HA H N N 146 ASP HB2 H N N 147 ASP HB3 H N N 148 ASP HD2 H N N 149 ASP HXT H N N 150 CYS N N N N 151 CYS CA C N R 152 CYS C C N N 153 CYS O O N N 154 CYS CB C N N 155 CYS SG S N N 156 CYS OXT O N N 157 CYS H H N N 158 CYS H2 H N N 159 CYS HA H N N 160 CYS HB2 H N N 161 CYS HB3 H N N 162 CYS HG H N N 163 CYS HXT H N N 164 GLN N N N N 165 GLN CA C N S 166 GLN C C N N 167 GLN O O N N 168 GLN CB C N N 169 GLN CG C N N 170 GLN CD C N N 171 GLN OE1 O N N 172 GLN NE2 N N N 173 GLN OXT O N N 174 GLN H H N N 175 GLN H2 H N N 176 GLN HA H N N 177 GLN HB2 H N N 178 GLN HB3 H N N 179 GLN HG2 H N N 180 GLN HG3 H N N 181 GLN HE21 H N N 182 GLN HE22 H N N 183 GLN HXT H N N 184 GLU N N N N 185 GLU CA C N S 186 GLU C C N N 187 GLU O O N N 188 GLU CB C N N 189 GLU CG C N N 190 GLU CD C N N 191 GLU OE1 O N N 192 GLU OE2 O N N 193 GLU OXT O N N 194 GLU H H N N 195 GLU H2 H N N 196 GLU HA H N N 197 GLU HB2 H N N 198 GLU HB3 H N N 199 GLU HG2 H N N 200 GLU HG3 H N N 201 GLU HE2 H N N 202 GLU HXT H N N 203 GLY N N N N 204 GLY CA C N N 205 GLY C C N N 206 GLY O O N N 207 GLY OXT O N N 208 GLY H H N N 209 GLY H2 H N N 210 GLY HA2 H N N 211 GLY HA3 H N N 212 GLY HXT H N N 213 HIS N N N N 214 HIS CA C N S 215 HIS C C N N 216 HIS O O N N 217 HIS CB C N N 218 HIS CG C Y N 219 HIS ND1 N Y N 220 HIS CD2 C Y N 221 HIS CE1 C Y N 222 HIS NE2 N Y N 223 HIS OXT O N N 224 HIS H H N N 225 HIS H2 H N N 226 HIS HA H N N 227 HIS HB2 H N N 228 HIS HB3 H N N 229 HIS HD1 H N N 230 HIS HD2 H N N 231 HIS HE1 H N N 232 HIS HE2 H N N 233 HIS HXT H N N 234 HOH O O N N 235 HOH H1 H N N 236 HOH H2 H N N 237 ILE N N N N 238 ILE CA C N S 239 ILE C C N N 240 ILE O O N N 241 ILE CB C N S 242 ILE CG1 C N N 243 ILE CG2 C N N 244 ILE CD1 C N N 245 ILE OXT O N N 246 ILE H H N N 247 ILE H2 H N N 248 ILE HA H N N 249 ILE HB H N N 250 ILE HG12 H N N 251 ILE HG13 H N N 252 ILE HG21 H N N 253 ILE HG22 H N N 254 ILE HG23 H N N 255 ILE HD11 H N N 256 ILE HD12 H N N 257 ILE HD13 H N N 258 ILE HXT H N N 259 LEU N N N N 260 LEU CA C N S 261 LEU C C N N 262 LEU O O N N 263 LEU CB C N N 264 LEU CG C N N 265 LEU CD1 C N N 266 LEU CD2 C N N 267 LEU OXT O N N 268 LEU H H N N 269 LEU H2 H N N 270 LEU HA H N N 271 LEU HB2 H N N 272 LEU HB3 H N N 273 LEU HG H N N 274 LEU HD11 H N N 275 LEU HD12 H N N 276 LEU HD13 H N N 277 LEU HD21 H N N 278 LEU HD22 H N N 279 LEU HD23 H N N 280 LEU HXT H N N 281 LYS N N N N 282 LYS CA C N S 283 LYS C C N N 284 LYS O O N N 285 LYS CB C N N 286 LYS CG C N N 287 LYS CD C N N 288 LYS CE C N N 289 LYS NZ N N N 290 LYS OXT O N N 291 LYS H H N N 292 LYS H2 H N N 293 LYS HA H N N 294 LYS HB2 H N N 295 LYS HB3 H N N 296 LYS HG2 H N N 297 LYS HG3 H N N 298 LYS HD2 H N N 299 LYS HD3 H N N 300 LYS HE2 H N N 301 LYS HE3 H N N 302 LYS HZ1 H N N 303 LYS HZ2 H N N 304 LYS HZ3 H N N 305 LYS HXT H N N 306 MET N N N N 307 MET CA C N S 308 MET C C N N 309 MET O O N N 310 MET CB C N N 311 MET CG C N N 312 MET SD S N N 313 MET CE C N N 314 MET OXT O N N 315 MET H H N N 316 MET H2 H N N 317 MET HA H N N 318 MET HB2 H N N 319 MET HB3 H N N 320 MET HG2 H N N 321 MET HG3 H N N 322 MET HE1 H N N 323 MET HE2 H N N 324 MET HE3 H N N 325 MET HXT H N N 326 PHE N N N N 327 PHE CA C N S 328 PHE C C N N 329 PHE O O N N 330 PHE CB C N N 331 PHE CG C Y N 332 PHE CD1 C Y N 333 PHE CD2 C Y N 334 PHE CE1 C Y N 335 PHE CE2 C Y N 336 PHE CZ C Y N 337 PHE OXT O N N 338 PHE H H N N 339 PHE H2 H N N 340 PHE HA H N N 341 PHE HB2 H N N 342 PHE HB3 H N N 343 PHE HD1 H N N 344 PHE HD2 H N N 345 PHE HE1 H N N 346 PHE HE2 H N N 347 PHE HZ H N N 348 PHE HXT H N N 349 PRO N N N N 350 PRO CA C N S 351 PRO C C N N 352 PRO O O N N 353 PRO CB C N N 354 PRO CG C N N 355 PRO CD C N N 356 PRO OXT O N N 357 PRO H H N N 358 PRO HA H N N 359 PRO HB2 H N N 360 PRO HB3 H N N 361 PRO HG2 H N N 362 PRO HG3 H N N 363 PRO HD2 H N N 364 PRO HD3 H N N 365 PRO HXT H N N 366 SER N N N N 367 SER CA C N S 368 SER C C N N 369 SER O O N N 370 SER CB C N N 371 SER OG O N N 372 SER OXT O N N 373 SER H H N N 374 SER H2 H N N 375 SER HA H N N 376 SER HB2 H N N 377 SER HB3 H N N 378 SER HG H N N 379 SER HXT H N N 380 THR N N N N 381 THR CA C N S 382 THR C C N N 383 THR O O N N 384 THR CB C N R 385 THR OG1 O N N 386 THR CG2 C N N 387 THR OXT O N N 388 THR H H N N 389 THR H2 H N N 390 THR HA H N N 391 THR HB H N N 392 THR HG1 H N N 393 THR HG21 H N N 394 THR HG22 H N N 395 THR HG23 H N N 396 THR HXT H N N 397 TRP N N N N 398 TRP CA C N S 399 TRP C C N N 400 TRP O O N N 401 TRP CB C N N 402 TRP CG C Y N 403 TRP CD1 C Y N 404 TRP CD2 C Y N 405 TRP NE1 N Y N 406 TRP CE2 C Y N 407 TRP CE3 C Y N 408 TRP CZ2 C Y N 409 TRP CZ3 C Y N 410 TRP CH2 C Y N 411 TRP OXT O N N 412 TRP H H N N 413 TRP H2 H N N 414 TRP HA H N N 415 TRP HB2 H N N 416 TRP HB3 H N N 417 TRP HD1 H N N 418 TRP HE1 H N N 419 TRP HE3 H N N 420 TRP HZ2 H N N 421 TRP HZ3 H N N 422 TRP HH2 H N N 423 TRP HXT H N N 424 TYR N N N N 425 TYR CA C N S 426 TYR C C N N 427 TYR O O N N 428 TYR CB C N N 429 TYR CG C Y N 430 TYR CD1 C Y N 431 TYR CD2 C Y N 432 TYR CE1 C Y N 433 TYR CE2 C Y N 434 TYR CZ C Y N 435 TYR OH O N N 436 TYR OXT O N N 437 TYR H H N N 438 TYR H2 H N N 439 TYR HA H N N 440 TYR HB2 H N N 441 TYR HB3 H N N 442 TYR HD1 H N N 443 TYR HD2 H N N 444 TYR HE1 H N N 445 TYR HE2 H N N 446 TYR HH H N N 447 TYR HXT H N N 448 VAL N N N N 449 VAL CA C N S 450 VAL C C N N 451 VAL O O N N 452 VAL CB C N N 453 VAL CG1 C N N 454 VAL CG2 C N N 455 VAL OXT O N N 456 VAL H H N N 457 VAL H2 H N N 458 VAL HA H N N 459 VAL HB H N N 460 VAL HG11 H N N 461 VAL HG12 H N N 462 VAL HG13 H N N 463 VAL HG21 H N N 464 VAL HG22 H N N 465 VAL HG23 H N N 466 VAL HXT H N N 467 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0D6 N1 C1 sing N N 1 0D6 N1 C2 sing N N 2 0D6 N1 C6 sing N N 3 0D6 C1 O1 doub N N 4 0D6 C2 C3 sing N N 5 0D6 C2 H21 sing N N 6 0D6 C2 H22 sing N N 7 0D6 C3 N4 sing N N 8 0D6 C3 H31 sing N N 9 0D6 C3 H32 sing N N 10 0D6 N4 C5 sing N N 11 0D6 N4 HN4 sing N N 12 0D6 C5 C6 sing N N 13 0D6 C5 H51 sing N N 14 0D6 C5 H52 sing N N 15 0D6 C6 H61 sing N N 16 0D6 C6 H62 sing N N 17 0D6 N CA sing N N 18 0D6 N H sing N N 19 0D6 CA C sing N N 20 0D6 CA CB sing N N 21 0D6 CA HA sing N N 22 0D6 C O doub N N 23 0D6 CB CG sing N N 24 0D6 CB HB2 sing N N 25 0D6 CB HB3 sing N N 26 0D6 CG CD1 sing N N 27 0D6 CG CD2 sing N N 28 0D6 CG HG sing N N 29 0D6 CD1 HD11 sing N N 30 0D6 CD1 HD12 sing N N 31 0D6 CD1 HD13 sing N N 32 0D6 CD2 HD21 sing N N 33 0D6 CD2 HD22 sing N N 34 0D6 CD2 HD23 sing N N 35 0D6 C11 C21 sing N N 36 0D6 C11 H11 sing N N 37 0D6 C11 H12 sing N N 38 0D6 C21 C31 sing N N 39 0D6 C21 H211 sing N N 40 0D6 C21 H221 sing N N 41 0D6 C31 N2 sing N N 42 0D6 C31 C4 sing N N 43 0D6 C31 H3 sing N N 44 0D6 N2 HN2 sing N N 45 0D6 C4 C51 sing N N 46 0D6 C4 H41 sing N N 47 0D6 C4 H42 sing N N 48 0D6 C51 "C1'" sing N N 49 0D6 C51 H511 sing N N 50 0D6 C51 H521 sing N N 51 0D6 "C1'" "C2'" doub Y N 52 0D6 "C1'" "C6'" sing Y N 53 0D6 "C2'" "C3'" sing Y N 54 0D6 "C2'" "H2'" sing N N 55 0D6 "C3'" "C4'" doub Y N 56 0D6 "C3'" "H3'" sing N N 57 0D6 "C4'" "C5'" sing Y N 58 0D6 "C4'" "H4'" sing N N 59 0D6 "C5'" "C6'" doub Y N 60 0D6 "C5'" "H5'" sing N N 61 0D6 "C6'" "H6'" sing N N 62 0D6 C12 C22 doub Y N 63 0D6 C12 C61 sing Y N 64 0D6 C12 H1 sing N N 65 0D6 C22 C32 sing Y N 66 0D6 C22 H2 sing N N 67 0D6 C32 C41 doub Y N 68 0D6 C32 H33 sing N N 69 0D6 C41 S1 sing N N 70 0D6 C41 C52 sing Y N 71 0D6 S1 O11 doub N N 72 0D6 S1 O2 doub N N 73 0D6 C52 C61 doub Y N 74 0D6 C52 H5 sing N N 75 0D6 C61 H6 sing N N 76 0D6 C1 N sing N N 77 0D6 C N2 sing N N 78 0D6 C11 S1 sing N N 79 ALA N CA sing N N 80 ALA N H sing N N 81 ALA N H2 sing N N 82 ALA CA C sing N N 83 ALA CA CB sing N N 84 ALA CA HA sing N N 85 ALA C O doub N N 86 ALA C OXT sing N N 87 ALA CB HB1 sing N N 88 ALA CB HB2 sing N N 89 ALA CB HB3 sing N N 90 ALA OXT HXT sing N N 91 ARG N CA sing N N 92 ARG N H sing N N 93 ARG N H2 sing N N 94 ARG CA C sing N N 95 ARG CA CB sing N N 96 ARG CA HA sing N N 97 ARG C O doub N N 98 ARG C OXT sing N N 99 ARG CB CG sing N N 100 ARG CB HB2 sing N N 101 ARG CB HB3 sing N N 102 ARG CG CD sing N N 103 ARG CG HG2 sing N N 104 ARG CG HG3 sing N N 105 ARG CD NE sing N N 106 ARG CD HD2 sing N N 107 ARG CD HD3 sing N N 108 ARG NE CZ sing N N 109 ARG NE HE sing N N 110 ARG CZ NH1 sing N N 111 ARG CZ NH2 doub N N 112 ARG NH1 HH11 sing N N 113 ARG NH1 HH12 sing N N 114 ARG NH2 HH21 sing N N 115 ARG NH2 HH22 sing N N 116 ARG OXT HXT sing N N 117 ASN N CA sing N N 118 ASN N H sing N N 119 ASN N H2 sing N N 120 ASN CA C sing N N 121 ASN CA CB sing N N 122 ASN CA HA sing N N 123 ASN C O doub N N 124 ASN C OXT sing N N 125 ASN CB CG sing N N 126 ASN CB HB2 sing N N 127 ASN CB HB3 sing N N 128 ASN CG OD1 doub N N 129 ASN CG ND2 sing N N 130 ASN ND2 HD21 sing N N 131 ASN ND2 HD22 sing N N 132 ASN OXT HXT sing N N 133 ASP N CA sing N N 134 ASP N H sing N N 135 ASP N H2 sing N N 136 ASP CA C sing N N 137 ASP CA CB sing N N 138 ASP CA HA sing N N 139 ASP C O doub N N 140 ASP C OXT sing N N 141 ASP CB CG sing N N 142 ASP CB HB2 sing N N 143 ASP CB HB3 sing N N 144 ASP CG OD1 doub N N 145 ASP CG OD2 sing N N 146 ASP OD2 HD2 sing N N 147 ASP OXT HXT sing N N 148 CYS N CA sing N N 149 CYS N H sing N N 150 CYS N H2 sing N N 151 CYS CA C sing N N 152 CYS CA CB sing N N 153 CYS CA HA sing N N 154 CYS C O doub N N 155 CYS C OXT sing N N 156 CYS CB SG sing N N 157 CYS CB HB2 sing N N 158 CYS CB HB3 sing N N 159 CYS SG HG sing N N 160 CYS OXT HXT sing N N 161 GLN N CA sing N N 162 GLN N H sing N N 163 GLN N H2 sing N N 164 GLN CA C sing N N 165 GLN CA CB sing N N 166 GLN CA HA sing N N 167 GLN C O doub N N 168 GLN C OXT sing N N 169 GLN CB CG sing N N 170 GLN CB HB2 sing N N 171 GLN CB HB3 sing N N 172 GLN CG CD sing N N 173 GLN CG HG2 sing N N 174 GLN CG HG3 sing N N 175 GLN CD OE1 doub N N 176 GLN CD NE2 sing N N 177 GLN NE2 HE21 sing N N 178 GLN NE2 HE22 sing N N 179 GLN OXT HXT sing N N 180 GLU N CA sing N N 181 GLU N H sing N N 182 GLU N H2 sing N N 183 GLU CA C sing N N 184 GLU CA CB sing N N 185 GLU CA HA sing N N 186 GLU C O doub N N 187 GLU C OXT sing N N 188 GLU CB CG sing N N 189 GLU CB HB2 sing N N 190 GLU CB HB3 sing N N 191 GLU CG CD sing N N 192 GLU CG HG2 sing N N 193 GLU CG HG3 sing N N 194 GLU CD OE1 doub N N 195 GLU CD OE2 sing N N 196 GLU OE2 HE2 sing N N 197 GLU OXT HXT sing N N 198 GLY N CA sing N N 199 GLY N H sing N N 200 GLY N H2 sing N N 201 GLY CA C sing N N 202 GLY CA HA2 sing N N 203 GLY CA HA3 sing N N 204 GLY C O doub N N 205 GLY C OXT sing N N 206 GLY OXT HXT sing N N 207 HIS N CA sing N N 208 HIS N H sing N N 209 HIS N H2 sing N N 210 HIS CA C sing N N 211 HIS CA CB sing N N 212 HIS CA HA sing N N 213 HIS C O doub N N 214 HIS C OXT sing N N 215 HIS CB CG sing N N 216 HIS CB HB2 sing N N 217 HIS CB HB3 sing N N 218 HIS CG ND1 sing Y N 219 HIS CG CD2 doub Y N 220 HIS ND1 CE1 doub Y N 221 HIS ND1 HD1 sing N N 222 HIS CD2 NE2 sing Y N 223 HIS CD2 HD2 sing N N 224 HIS CE1 NE2 sing Y N 225 HIS CE1 HE1 sing N N 226 HIS NE2 HE2 sing N N 227 HIS OXT HXT sing N N 228 HOH O H1 sing N N 229 HOH O H2 sing N N 230 ILE N CA sing N N 231 ILE N H sing N N 232 ILE N H2 sing N N 233 ILE CA C sing N N 234 ILE CA CB sing N N 235 ILE CA HA sing N N 236 ILE C O doub N N 237 ILE C OXT sing N N 238 ILE CB CG1 sing N N 239 ILE CB CG2 sing N N 240 ILE CB HB sing N N 241 ILE CG1 CD1 sing N N 242 ILE CG1 HG12 sing N N 243 ILE CG1 HG13 sing N N 244 ILE CG2 HG21 sing N N 245 ILE CG2 HG22 sing N N 246 ILE CG2 HG23 sing N N 247 ILE CD1 HD11 sing N N 248 ILE CD1 HD12 sing N N 249 ILE CD1 HD13 sing N N 250 ILE OXT HXT sing N N 251 LEU N CA sing N N 252 LEU N H sing N N 253 LEU N H2 sing N N 254 LEU CA C sing N N 255 LEU CA CB sing N N 256 LEU CA HA sing N N 257 LEU C O doub N N 258 LEU C OXT sing N N 259 LEU CB CG sing N N 260 LEU CB HB2 sing N N 261 LEU CB HB3 sing N N 262 LEU CG CD1 sing N N 263 LEU CG CD2 sing N N 264 LEU CG HG sing N N 265 LEU CD1 HD11 sing N N 266 LEU CD1 HD12 sing N N 267 LEU CD1 HD13 sing N N 268 LEU CD2 HD21 sing N N 269 LEU CD2 HD22 sing N N 270 LEU CD2 HD23 sing N N 271 LEU OXT HXT sing N N 272 LYS N CA sing N N 273 LYS N H sing N N 274 LYS N H2 sing N N 275 LYS CA C sing N N 276 LYS CA CB sing N N 277 LYS CA HA sing N N 278 LYS C O doub N N 279 LYS C OXT sing N N 280 LYS CB CG sing N N 281 LYS CB HB2 sing N N 282 LYS CB HB3 sing N N 283 LYS CG CD sing N N 284 LYS CG HG2 sing N N 285 LYS CG HG3 sing N N 286 LYS CD CE sing N N 287 LYS CD HD2 sing N N 288 LYS CD HD3 sing N N 289 LYS CE NZ sing N N 290 LYS CE HE2 sing N N 291 LYS CE HE3 sing N N 292 LYS NZ HZ1 sing N N 293 LYS NZ HZ2 sing N N 294 LYS NZ HZ3 sing N N 295 LYS OXT HXT sing N N 296 MET N CA sing N N 297 MET N H sing N N 298 MET N H2 sing N N 299 MET CA C sing N N 300 MET CA CB sing N N 301 MET CA HA sing N N 302 MET C O doub N N 303 MET C OXT sing N N 304 MET CB CG sing N N 305 MET CB HB2 sing N N 306 MET CB HB3 sing N N 307 MET CG SD sing N N 308 MET CG HG2 sing N N 309 MET CG HG3 sing N N 310 MET SD CE sing N N 311 MET CE HE1 sing N N 312 MET CE HE2 sing N N 313 MET CE HE3 sing N N 314 MET OXT HXT sing N N 315 PHE N CA sing N N 316 PHE N H sing N N 317 PHE N H2 sing N N 318 PHE CA C sing N N 319 PHE CA CB sing N N 320 PHE CA HA sing N N 321 PHE C O doub N N 322 PHE C OXT sing N N 323 PHE CB CG sing N N 324 PHE CB HB2 sing N N 325 PHE CB HB3 sing N N 326 PHE CG CD1 doub Y N 327 PHE CG CD2 sing Y N 328 PHE CD1 CE1 sing Y N 329 PHE CD1 HD1 sing N N 330 PHE CD2 CE2 doub Y N 331 PHE CD2 HD2 sing N N 332 PHE CE1 CZ doub Y N 333 PHE CE1 HE1 sing N N 334 PHE CE2 CZ sing Y N 335 PHE CE2 HE2 sing N N 336 PHE CZ HZ sing N N 337 PHE OXT HXT sing N N 338 PRO N CA sing N N 339 PRO N CD sing N N 340 PRO N H sing N N 341 PRO CA C sing N N 342 PRO CA CB sing N N 343 PRO CA HA sing N N 344 PRO C O doub N N 345 PRO C OXT sing N N 346 PRO CB CG sing N N 347 PRO CB HB2 sing N N 348 PRO CB HB3 sing N N 349 PRO CG CD sing N N 350 PRO CG HG2 sing N N 351 PRO CG HG3 sing N N 352 PRO CD HD2 sing N N 353 PRO CD HD3 sing N N 354 PRO OXT HXT sing N N 355 SER N CA sing N N 356 SER N H sing N N 357 SER N H2 sing N N 358 SER CA C sing N N 359 SER CA CB sing N N 360 SER CA HA sing N N 361 SER C O doub N N 362 SER C OXT sing N N 363 SER CB OG sing N N 364 SER CB HB2 sing N N 365 SER CB HB3 sing N N 366 SER OG HG sing N N 367 SER OXT HXT sing N N 368 THR N CA sing N N 369 THR N H sing N N 370 THR N H2 sing N N 371 THR CA C sing N N 372 THR CA CB sing N N 373 THR CA HA sing N N 374 THR C O doub N N 375 THR C OXT sing N N 376 THR CB OG1 sing N N 377 THR CB CG2 sing N N 378 THR CB HB sing N N 379 THR OG1 HG1 sing N N 380 THR CG2 HG21 sing N N 381 THR CG2 HG22 sing N N 382 THR CG2 HG23 sing N N 383 THR OXT HXT sing N N 384 TRP N CA sing N N 385 TRP N H sing N N 386 TRP N H2 sing N N 387 TRP CA C sing N N 388 TRP CA CB sing N N 389 TRP CA HA sing N N 390 TRP C O doub N N 391 TRP C OXT sing N N 392 TRP CB CG sing N N 393 TRP CB HB2 sing N N 394 TRP CB HB3 sing N N 395 TRP CG CD1 doub Y N 396 TRP CG CD2 sing Y N 397 TRP CD1 NE1 sing Y N 398 TRP CD1 HD1 sing N N 399 TRP CD2 CE2 doub Y N 400 TRP CD2 CE3 sing Y N 401 TRP NE1 CE2 sing Y N 402 TRP NE1 HE1 sing N N 403 TRP CE2 CZ2 sing Y N 404 TRP CE3 CZ3 doub Y N 405 TRP CE3 HE3 sing N N 406 TRP CZ2 CH2 doub Y N 407 TRP CZ2 HZ2 sing N N 408 TRP CZ3 CH2 sing Y N 409 TRP CZ3 HZ3 sing N N 410 TRP CH2 HH2 sing N N 411 TRP OXT HXT sing N N 412 TYR N CA sing N N 413 TYR N H sing N N 414 TYR N H2 sing N N 415 TYR CA C sing N N 416 TYR CA CB sing N N 417 TYR CA HA sing N N 418 TYR C O doub N N 419 TYR C OXT sing N N 420 TYR CB CG sing N N 421 TYR CB HB2 sing N N 422 TYR CB HB3 sing N N 423 TYR CG CD1 doub Y N 424 TYR CG CD2 sing Y N 425 TYR CD1 CE1 sing Y N 426 TYR CD1 HD1 sing N N 427 TYR CD2 CE2 doub Y N 428 TYR CD2 HD2 sing N N 429 TYR CE1 CZ doub Y N 430 TYR CE1 HE1 sing N N 431 TYR CE2 CZ sing Y N 432 TYR CE2 HE2 sing N N 433 TYR CZ OH sing N N 434 TYR OH HH sing N N 435 TYR OXT HXT sing N N 436 VAL N CA sing N N 437 VAL N H sing N N 438 VAL N H2 sing N N 439 VAL CA C sing N N 440 VAL CA CB sing N N 441 VAL CA HA sing N N 442 VAL C O doub N N 443 VAL C OXT sing N N 444 VAL CB CG1 sing N N 445 VAL CB CG2 sing N N 446 VAL CB HB sing N N 447 VAL CG1 HG11 sing N N 448 VAL CG1 HG12 sing N N 449 VAL CG1 HG13 sing N N 450 VAL CG2 HG21 sing N N 451 VAL CG2 HG22 sing N N 452 VAL CG2 HG23 sing N N 453 VAL OXT HXT sing N N 454 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'HOMOLOGY MODEL FOR CATHEPSIN K (MEM, UNPUBLISHED RESULTS)' # _atom_sites.entry_id 1MEM _atom_sites.fract_transf_matrix[1][1] 0.024498 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019984 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009441 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_