data_1MFW # _entry.id 1MFW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MFW pdb_00001mfw 10.2210/pdb1mfw/pdb RCSB RCSB016881 ? ? WWPDB D_1000016881 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MG4 'STRUCTURE OF THE DCX DOMAINS: IMPLICATIONS FOR MICROTUBULE BUNDLING AND CEREBRAL CORTEX DEVELOPMENT' unspecified PDB 1MJD 'Structure of the DCX domains: Implications for Microtubule Binding and Cerebral Cortex Development' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MFW _pdbx_database_status.recvd_initial_deposition_date 2002-08-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, M.H.' 1 'Cierpickil, T.' 2 'Derewenda, U.' 3 'Krowarsch, D.' 4 'Feng, Y.' 5 'Devedjiev, Y.' 6 'Dauter, Z.' 7 'Walsh, C.A.' 8 'Otlewski, J.' 9 'Bushweller, J.H.' 10 'Derewenda, Z.' 11 # _citation.id primary _citation.title 'The DCX-domain Tandems of Doublecortin and Doublecortin-like Kinase' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 324 _citation.page_last 333 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12692530 _citation.pdbx_database_id_DOI 10.1038/nsb918 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, M.H.' 1 ? primary 'Cierpickil, T.' 2 ? primary 'Derewenda, U.' 3 ? primary 'Krowarsch, D.' 4 ? primary 'Feng, Y.' 5 ? primary 'Devedjiev, Y.' 6 ? primary 'Dauter, Z.' 7 ? primary 'Walsh, C.A.' 8 ? primary 'Otlewski, J.' 9 ? primary 'Bushweller, J.H.' 10 ? primary 'Derewenda, Z.' 11 ? # _cell.entry_id 1MFW _cell.length_a 38.785 _cell.length_b 29.430 _cell.length_c 40.099 _cell.angle_alpha 90.00 _cell.angle_beta 115.72 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MFW _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN)' 12251.792 1 ? 'L120(MSE)' '(N-Terminal Domain), Residues 49-154' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Doublecortin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISS(MSE)DQL VEGESYVCGSIEPFKKLEYTKNVNPNWSVNV ; _entity_poly.pdbx_seq_one_letter_code_can ;GTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSMDQLVEGE SYVCGSIEPFKKLEYTKNVNPNWSVNV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 LEU n 1 4 SER n 1 5 SER n 1 6 GLU n 1 7 LYS n 1 8 LYS n 1 9 ALA n 1 10 LYS n 1 11 LYS n 1 12 VAL n 1 13 ARG n 1 14 PHE n 1 15 TYR n 1 16 ARG n 1 17 ASN n 1 18 GLY n 1 19 ASP n 1 20 ARG n 1 21 TYR n 1 22 PHE n 1 23 LYS n 1 24 GLY n 1 25 ILE n 1 26 VAL n 1 27 TYR n 1 28 ALA n 1 29 ILE n 1 30 SER n 1 31 PRO n 1 32 ASP n 1 33 ARG n 1 34 PHE n 1 35 ARG n 1 36 SER n 1 37 PHE n 1 38 GLU n 1 39 ALA n 1 40 LEU n 1 41 LEU n 1 42 ALA n 1 43 ASP n 1 44 LEU n 1 45 THR n 1 46 ARG n 1 47 THR n 1 48 LEU n 1 49 SER n 1 50 ASP n 1 51 ASN n 1 52 VAL n 1 53 ASN n 1 54 LEU n 1 55 PRO n 1 56 GLN n 1 57 GLY n 1 58 VAL n 1 59 ARG n 1 60 THR n 1 61 ILE n 1 62 TYR n 1 63 THR n 1 64 ILE n 1 65 ASP n 1 66 GLY n 1 67 LEU n 1 68 LYS n 1 69 LYS n 1 70 ILE n 1 71 SER n 1 72 SER n 1 73 MSE n 1 74 ASP n 1 75 GLN n 1 76 LEU n 1 77 VAL n 1 78 GLU n 1 79 GLY n 1 80 GLU n 1 81 SER n 1 82 TYR n 1 83 VAL n 1 84 CYS n 1 85 GLY n 1 86 SER n 1 87 ILE n 1 88 GLU n 1 89 PRO n 1 90 PHE n 1 91 LYS n 1 92 LYS n 1 93 LEU n 1 94 GLU n 1 95 TYR n 1 96 THR n 1 97 LYS n 1 98 ASN n 1 99 VAL n 1 100 ASN n 1 101 PRO n 1 102 ASN n 1 103 TRP n 1 104 SER n 1 105 VAL n 1 106 ASN n 1 107 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGSTUNIL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCAK1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGES YVCGSIEPFKKLEYTKNVNPNWSVNV ; _struct_ref.pdbx_align_begin 49 _struct_ref.pdbx_db_accession O15075 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MFW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15075 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1MFW GLY A 1 ? UNP O15075 ? ? 'cloning artifact' 48 1 1 1MFW MSE A 73 ? UNP O15075 LEU 120 'engineered mutation' 120 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1MFW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 27.1 _exptl_crystal.density_Matthews 1.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'CITRATE BUFFER, AMMONIUM SULFATE, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-05-29 _diffrn_detector.details 'Double crystal focusing mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (III)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9791 1.0 3 0.9718 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795,0.9791,0.9718 # _reflns.entry_id 1MFW _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.00 _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 22.820 _reflns.number_all ? _reflns.number_obs 9312 _reflns.percent_possible_obs 84.6 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.600 _reflns_shell.d_res_low 1.660 _reflns_shell.percent_possible_all 35.9 _reflns_shell.Rmerge_I_obs 0.21 _reflns_shell.pdbx_Rsym_value 0.032 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MFW _refine.ls_number_reflns_obs 9256 _refine.ls_number_reflns_all 9312 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.600 _refine.ls_percent_reflns_obs 98.61 _refine.ls_R_factor_obs 0.13212 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12745 _refine.ls_R_factor_R_free 0.18046 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.1 _refine.ls_number_reflns_R_free 838 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 18.464 _refine.aniso_B[1][1] 2.53 _refine.aniso_B[2][2] -0.89 _refine.aniso_B[3][3] -1.12 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.60 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.103 _refine.overall_SU_B 2.169 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML 0.071 _refine.pdbx_overall_ESU_R 0.679 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 855 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 999 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 879 'X-RAY DIFFRACTION' ? r_bond_other_d 0.006 0.020 ? 794 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.509 1.974 ? 1186 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.883 3.000 ? 1852 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.801 5.000 ? 105 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 130 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 951 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 183 'X-RAY DIFFRACTION' ? r_nbd_refined 0.243 0.200 ? 159 'X-RAY DIFFRACTION' ? r_nbd_other 0.266 0.200 ? 940 'X-RAY DIFFRACTION' ? r_nbtor_other 0.082 0.200 ? 521 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.208 0.200 ? 105 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.204 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.298 0.200 ? 96 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.209 0.200 ? 40 'X-RAY DIFFRACTION' ? r_mcbond_it 1.259 1.500 ? 527 'X-RAY DIFFRACTION' ? r_mcangle_it 2.142 2.000 ? 856 'X-RAY DIFFRACTION' ? r_scbond_it 2.418 3.000 ? 352 'X-RAY DIFFRACTION' ? r_scangle_it 3.740 4.500 ? 330 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.497 2.000 ? 879 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1.841 2.000 ? 865 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.640 _refine_ls_shell.number_reflns_R_work 238 _refine_ls_shell.R_factor_R_work 0.204 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1MFW _struct.title 'STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: SELENOMETHIONINE LABELED PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MFW _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Doublecortin, Doublecortin-like kinase, Microtubule bundling, Cortex development, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The Biological Assembly is a Tandem of N-terminal and C-terminal domains' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ALA A 9 ? SER A 52 ALA A 56 5 ? 5 HELX_P HELX_P2 2 SER A 36 ? SER A 49 ? SER A 83 SER A 96 1 ? 14 HELX_P HELX_P3 3 SER A 72 ? LEU A 76 ? SER A 119 LEU A 123 5 ? 5 HELX_P HELX_P4 4 ASN A 100 ? VAL A 105 ? ASN A 147 VAL A 152 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 72 C ? ? ? 1_555 A MSE 73 N ? ? A SER 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 73 C ? ? ? 1_555 A ASP 74 N ? ? A MSE 120 A ASP 121 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 25 ? ILE A 29 ? ILE A 72 ILE A 76 A 2 LYS A 10 ? ARG A 16 ? LYS A 57 ARG A 63 A 3 SER A 81 ? GLY A 85 ? SER A 128 GLY A 132 A 4 THR A 60 ? THR A 63 ? THR A 107 THR A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 29 ? O ILE A 76 N LYS A 10 ? N LYS A 57 A 2 3 N TYR A 15 ? N TYR A 62 O CYS A 84 ? O CYS A 131 A 3 4 O VAL A 83 ? O VAL A 130 N TYR A 62 ? N TYR A 109 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1001 ? 10 'BINDING SITE FOR RESIDUE SO4 A 1001' AC2 Software A SO4 1002 ? 9 'BINDING SITE FOR RESIDUE SO4 A 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 54 ? LEU A 101 . ? 1_555 ? 2 AC1 10 PRO A 55 ? PRO A 102 . ? 1_555 ? 3 AC1 10 SER A 86 ? SER A 133 . ? 1_555 ? 4 AC1 10 ILE A 87 ? ILE A 134 . ? 1_555 ? 5 AC1 10 GLU A 88 ? GLU A 135 . ? 1_555 ? 6 AC1 10 HOH D . ? HOH A 1008 . ? 1_555 ? 7 AC1 10 HOH D . ? HOH A 1018 . ? 1_555 ? 8 AC1 10 HOH D . ? HOH A 1036 . ? 1_555 ? 9 AC1 10 HOH D . ? HOH A 1073 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 1092 . ? 1_555 ? 11 AC2 9 TYR A 62 ? TYR A 109 . ? 1_555 ? 12 AC2 9 LYS A 69 ? LYS A 116 . ? 1_555 ? 13 AC2 9 PRO A 89 ? PRO A 136 . ? 1_555 ? 14 AC2 9 PHE A 90 ? PHE A 137 . ? 1_555 ? 15 AC2 9 HOH D . ? HOH A 1057 . ? 1_555 ? 16 AC2 9 HOH D . ? HOH A 1101 . ? 1_555 ? 17 AC2 9 HOH D . ? HOH A 1107 . ? 1_555 ? 18 AC2 9 HOH D . ? HOH A 1120 . ? 1_555 ? 19 AC2 9 HOH D . ? HOH A 1128 . ? 1_555 ? # _database_PDB_matrix.entry_id 1MFW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MFW _atom_sites.fract_transf_matrix[1][1] 0.025783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012417 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027680 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 48 ? ? ? A . n A 1 2 THR 2 49 49 THR THR A . n A 1 3 LEU 3 50 50 LEU LEU A . n A 1 4 SER 4 51 51 SER SER A . n A 1 5 SER 5 52 52 SER SER A . n A 1 6 GLU 6 53 53 GLU GLU A . n A 1 7 LYS 7 54 54 LYS LYS A . n A 1 8 LYS 8 55 55 LYS LYS A . n A 1 9 ALA 9 56 56 ALA ALA A . n A 1 10 LYS 10 57 57 LYS LYS A . n A 1 11 LYS 11 58 58 LYS LYS A . n A 1 12 VAL 12 59 59 VAL VAL A . n A 1 13 ARG 13 60 60 ARG ARG A . n A 1 14 PHE 14 61 61 PHE PHE A . n A 1 15 TYR 15 62 62 TYR TYR A . n A 1 16 ARG 16 63 63 ARG ARG A . n A 1 17 ASN 17 64 64 ASN ASN A . n A 1 18 GLY 18 65 65 GLY GLY A . n A 1 19 ASP 19 66 66 ASP ASP A . n A 1 20 ARG 20 67 67 ARG ARG A . n A 1 21 TYR 21 68 68 TYR TYR A . n A 1 22 PHE 22 69 69 PHE PHE A . n A 1 23 LYS 23 70 70 LYS LYS A . n A 1 24 GLY 24 71 71 GLY GLY A . n A 1 25 ILE 25 72 72 ILE ILE A . n A 1 26 VAL 26 73 73 VAL VAL A . n A 1 27 TYR 27 74 74 TYR TYR A . n A 1 28 ALA 28 75 75 ALA ALA A . n A 1 29 ILE 29 76 76 ILE ILE A . n A 1 30 SER 30 77 77 SER SER A . n A 1 31 PRO 31 78 78 PRO PRO A . n A 1 32 ASP 32 79 79 ASP ASP A . n A 1 33 ARG 33 80 80 ARG ARG A . n A 1 34 PHE 34 81 81 PHE PHE A . n A 1 35 ARG 35 82 82 ARG ARG A . n A 1 36 SER 36 83 83 SER SER A . n A 1 37 PHE 37 84 84 PHE PHE A . n A 1 38 GLU 38 85 85 GLU GLU A . n A 1 39 ALA 39 86 86 ALA ALA A . n A 1 40 LEU 40 87 87 LEU LEU A . n A 1 41 LEU 41 88 88 LEU LEU A . n A 1 42 ALA 42 89 89 ALA ALA A . n A 1 43 ASP 43 90 90 ASP ASP A . n A 1 44 LEU 44 91 91 LEU LEU A . n A 1 45 THR 45 92 92 THR THR A . n A 1 46 ARG 46 93 93 ARG ARG A . n A 1 47 THR 47 94 94 THR THR A . n A 1 48 LEU 48 95 95 LEU LEU A . n A 1 49 SER 49 96 96 SER SER A . n A 1 50 ASP 50 97 97 ASP ASP A . n A 1 51 ASN 51 98 98 ASN ASN A . n A 1 52 VAL 52 99 99 VAL VAL A . n A 1 53 ASN 53 100 100 ASN ASN A . n A 1 54 LEU 54 101 101 LEU LEU A . n A 1 55 PRO 55 102 102 PRO PRO A . n A 1 56 GLN 56 103 103 GLN GLN A . n A 1 57 GLY 57 104 104 GLY GLY A . n A 1 58 VAL 58 105 105 VAL VAL A . n A 1 59 ARG 59 106 106 ARG ARG A . n A 1 60 THR 60 107 107 THR THR A . n A 1 61 ILE 61 108 108 ILE ILE A . n A 1 62 TYR 62 109 109 TYR TYR A . n A 1 63 THR 63 110 110 THR THR A . n A 1 64 ILE 64 111 111 ILE ILE A . n A 1 65 ASP 65 112 112 ASP ASP A . n A 1 66 GLY 66 113 113 GLY GLY A . n A 1 67 LEU 67 114 114 LEU LEU A . n A 1 68 LYS 68 115 115 LYS LYS A . n A 1 69 LYS 69 116 116 LYS LYS A . n A 1 70 ILE 70 117 117 ILE ILE A . n A 1 71 SER 71 118 118 SER SER A . n A 1 72 SER 72 119 119 SER SER A . n A 1 73 MSE 73 120 120 MSE MSE A . n A 1 74 ASP 74 121 121 ASP ASP A . n A 1 75 GLN 75 122 122 GLN GLN A . n A 1 76 LEU 76 123 123 LEU LEU A . n A 1 77 VAL 77 124 124 VAL VAL A . n A 1 78 GLU 78 125 125 GLU GLU A . n A 1 79 GLY 79 126 126 GLY GLY A . n A 1 80 GLU 80 127 127 GLU GLU A . n A 1 81 SER 81 128 128 SER SER A . n A 1 82 TYR 82 129 129 TYR TYR A . n A 1 83 VAL 83 130 130 VAL VAL A . n A 1 84 CYS 84 131 131 CYS CYS A . n A 1 85 GLY 85 132 132 GLY GLY A . n A 1 86 SER 86 133 133 SER SER A . n A 1 87 ILE 87 134 134 ILE ILE A . n A 1 88 GLU 88 135 135 GLU GLU A . n A 1 89 PRO 89 136 136 PRO PRO A . n A 1 90 PHE 90 137 137 PHE PHE A . n A 1 91 LYS 91 138 138 LYS LYS A . n A 1 92 LYS 92 139 139 LYS LYS A . n A 1 93 LEU 93 140 140 LEU LEU A . n A 1 94 GLU 94 141 141 GLU GLU A . n A 1 95 TYR 95 142 142 TYR TYR A . n A 1 96 THR 96 143 143 THR THR A . n A 1 97 LYS 97 144 144 LYS LYS A . n A 1 98 ASN 98 145 145 ASN ASN A . n A 1 99 VAL 99 146 146 VAL VAL A . n A 1 100 ASN 100 147 147 ASN ASN A . n A 1 101 PRO 101 148 148 PRO PRO A . n A 1 102 ASN 102 149 149 ASN ASN A . n A 1 103 TRP 103 150 150 TRP TRP A . n A 1 104 SER 104 151 151 SER SER A . n A 1 105 VAL 105 152 152 VAL VAL A . n A 1 106 ASN 106 153 153 ASN ASN A . n A 1 107 VAL 107 154 154 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1001 1001 SO4 SUL A . C 2 SO4 1 1002 1002 SO4 SUL A . D 3 HOH 1 1003 1 HOH HOH A . D 3 HOH 2 1004 2 HOH HOH A . D 3 HOH 3 1005 3 HOH HOH A . D 3 HOH 4 1006 4 HOH HOH A . D 3 HOH 5 1007 5 HOH HOH A . D 3 HOH 6 1008 6 HOH HOH A . D 3 HOH 7 1009 7 HOH HOH A . D 3 HOH 8 1010 8 HOH HOH A . D 3 HOH 9 1011 9 HOH HOH A . D 3 HOH 10 1012 10 HOH HOH A . D 3 HOH 11 1013 11 HOH HOH A . D 3 HOH 12 1014 12 HOH HOH A . D 3 HOH 13 1015 13 HOH HOH A . D 3 HOH 14 1016 14 HOH HOH A . D 3 HOH 15 1017 15 HOH HOH A . D 3 HOH 16 1018 16 HOH HOH A . D 3 HOH 17 1019 17 HOH HOH A . D 3 HOH 18 1020 18 HOH HOH A . D 3 HOH 19 1021 19 HOH HOH A . D 3 HOH 20 1022 20 HOH HOH A . D 3 HOH 21 1023 21 HOH HOH A . D 3 HOH 22 1024 22 HOH HOH A . D 3 HOH 23 1025 23 HOH HOH A . D 3 HOH 24 1026 24 HOH HOH A . D 3 HOH 25 1027 25 HOH HOH A . D 3 HOH 26 1028 26 HOH HOH A . D 3 HOH 27 1029 27 HOH HOH A . D 3 HOH 28 1030 29 HOH HOH A . D 3 HOH 29 1031 30 HOH HOH A . D 3 HOH 30 1032 31 HOH HOH A . D 3 HOH 31 1033 32 HOH HOH A . D 3 HOH 32 1034 33 HOH HOH A . D 3 HOH 33 1035 34 HOH HOH A . D 3 HOH 34 1036 35 HOH HOH A . D 3 HOH 35 1037 36 HOH HOH A . D 3 HOH 36 1038 37 HOH HOH A . D 3 HOH 37 1039 38 HOH HOH A . D 3 HOH 38 1040 39 HOH HOH A . D 3 HOH 39 1041 40 HOH HOH A . D 3 HOH 40 1042 41 HOH HOH A . D 3 HOH 41 1043 42 HOH HOH A . D 3 HOH 42 1044 43 HOH HOH A . D 3 HOH 43 1045 44 HOH HOH A . D 3 HOH 44 1046 45 HOH HOH A . D 3 HOH 45 1047 46 HOH HOH A . D 3 HOH 46 1048 47 HOH HOH A . D 3 HOH 47 1049 48 HOH HOH A . D 3 HOH 48 1050 49 HOH HOH A . D 3 HOH 49 1051 50 HOH HOH A . D 3 HOH 50 1052 51 HOH HOH A . D 3 HOH 51 1053 52 HOH HOH A . D 3 HOH 52 1054 53 HOH HOH A . D 3 HOH 53 1055 54 HOH HOH A . D 3 HOH 54 1056 55 HOH HOH A . D 3 HOH 55 1057 56 HOH HOH A . D 3 HOH 56 1058 57 HOH HOH A . D 3 HOH 57 1059 58 HOH HOH A . D 3 HOH 58 1060 59 HOH HOH A . D 3 HOH 59 1061 60 HOH HOH A . D 3 HOH 60 1062 61 HOH HOH A . D 3 HOH 61 1063 62 HOH HOH A . D 3 HOH 62 1064 63 HOH HOH A . D 3 HOH 63 1065 64 HOH HOH A . D 3 HOH 64 1066 65 HOH HOH A . D 3 HOH 65 1067 66 HOH HOH A . D 3 HOH 66 1068 67 HOH HOH A . D 3 HOH 67 1069 68 HOH HOH A . D 3 HOH 68 1070 69 HOH HOH A . D 3 HOH 69 1071 70 HOH HOH A . D 3 HOH 70 1072 71 HOH HOH A . D 3 HOH 71 1073 72 HOH HOH A . D 3 HOH 72 1074 73 HOH HOH A . D 3 HOH 73 1075 74 HOH HOH A . D 3 HOH 74 1076 75 HOH HOH A . D 3 HOH 75 1077 76 HOH HOH A . D 3 HOH 76 1078 77 HOH HOH A . D 3 HOH 77 1079 78 HOH HOH A . D 3 HOH 78 1080 79 HOH HOH A . D 3 HOH 79 1081 80 HOH HOH A . D 3 HOH 80 1082 81 HOH HOH A . D 3 HOH 81 1083 82 HOH HOH A . D 3 HOH 82 1084 83 HOH HOH A . D 3 HOH 83 1085 84 HOH HOH A . D 3 HOH 84 1086 86 HOH HOH A . D 3 HOH 85 1087 89 HOH HOH A . D 3 HOH 86 1088 90 HOH HOH A . D 3 HOH 87 1089 91 HOH HOH A . D 3 HOH 88 1090 92 HOH HOH A . D 3 HOH 89 1091 93 HOH HOH A . D 3 HOH 90 1092 94 HOH HOH A . D 3 HOH 91 1093 95 HOH HOH A . D 3 HOH 92 1094 96 HOH HOH A . D 3 HOH 93 1095 97 HOH HOH A . D 3 HOH 94 1096 98 HOH HOH A . D 3 HOH 95 1097 99 HOH HOH A . D 3 HOH 96 1098 100 HOH HOH A . D 3 HOH 97 1099 101 HOH HOH A . D 3 HOH 98 1100 102 HOH HOH A . D 3 HOH 99 1101 103 HOH HOH A . D 3 HOH 100 1102 104 HOH HOH A . D 3 HOH 101 1103 105 HOH HOH A . D 3 HOH 102 1104 106 HOH HOH A . D 3 HOH 103 1105 107 HOH HOH A . D 3 HOH 104 1106 108 HOH HOH A . D 3 HOH 105 1107 109 HOH HOH A . D 3 HOH 106 1108 110 HOH HOH A . D 3 HOH 107 1109 111 HOH HOH A . D 3 HOH 108 1110 112 HOH HOH A . D 3 HOH 109 1111 113 HOH HOH A . D 3 HOH 110 1112 114 HOH HOH A . D 3 HOH 111 1113 115 HOH HOH A . D 3 HOH 112 1114 116 HOH HOH A . D 3 HOH 113 1115 117 HOH HOH A . D 3 HOH 114 1116 118 HOH HOH A . D 3 HOH 115 1117 119 HOH HOH A . D 3 HOH 116 1118 120 HOH HOH A . D 3 HOH 117 1119 121 HOH HOH A . D 3 HOH 118 1120 122 HOH HOH A . D 3 HOH 119 1121 123 HOH HOH A . D 3 HOH 120 1122 124 HOH HOH A . D 3 HOH 121 1123 125 HOH HOH A . D 3 HOH 122 1124 126 HOH HOH A . D 3 HOH 123 1125 127 HOH HOH A . D 3 HOH 124 1126 128 HOH HOH A . D 3 HOH 125 1127 129 HOH HOH A . D 3 HOH 126 1128 130 HOH HOH A . D 3 HOH 127 1129 131 HOH HOH A . D 3 HOH 128 1130 132 HOH HOH A . D 3 HOH 129 1131 133 HOH HOH A . D 3 HOH 130 1132 134 HOH HOH A . D 3 HOH 131 1133 135 HOH HOH A . D 3 HOH 132 1134 136 HOH HOH A . D 3 HOH 133 1135 137 HOH HOH A . D 3 HOH 134 1136 138 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 73 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 120 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-29 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXS phasing . ? 3 REFMAC refinement 5.1.24 ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 85 ? ? O A HOH 1068 ? ? 1.79 2 1 OE2 A GLU 85 ? ? O A HOH 1068 ? ? 2.01 3 1 CD A GLU 85 ? ? O A HOH 1068 ? ? 2.06 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 120 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 120 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.562 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.388 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 80 ? ? -101.49 -95.16 2 1 SER A 133 ? ? -127.71 -92.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 48 ? A GLY 1 2 1 N 0 A HOH 1075 ? D HOH ? 3 1 N 0 A HOH 1113 ? D HOH ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #