HEADER OXIDOREDUCTASE 15-AUG-02 1MGO TITLE HORSE LIVER ALCOHOL DEHYDROGENASE PHE93ALA MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE E CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: M64864; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CJ236; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBPP KEYWDS DEHYDROGENASE, ALCOHOL, NICOTINAMIDE COENZYME, MUTANT, SUBSTRATE KEYWDS 2 BINDING SITE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.RUBACH,B.V.PLAPP REVDAT 5 14-FEB-24 1MGO 1 REMARK REVDAT 4 27-OCT-21 1MGO 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1MGO 1 VERSN REVDAT 2 21-JAN-03 1MGO 1 JRNL REVDAT 1 13-NOV-02 1MGO 0 JRNL AUTH J.K.RUBACH,B.V.PLAPP JRNL TITL MOBILITY OF FLUOROBENZYL ALCOHOLS BOUND TO LIVER ALCOHOL JRNL TITL 2 DEHYDROGENASES AS DETERMINED BY NMR AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHIC STUDIES JRNL REF BIOCHEMISTRY V. 41 15770 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12501206 JRNL DOI 10.1021/BI026581H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.RAMASWAMY,H.EKLUND,B.V.PLAPP REMARK 1 TITL STRUCTURES OF HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED REMARK 1 TITL 2 WITH NAD+ AND SUBSTITUTED BENZYL ALCOHOLS. REMARK 1 REF BIOCHEMISTRY V. 33 5230 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.EKLUND,B.V.PLAPP,J.P.SAMAMA,C.I.BRANDEN REMARK 1 TITL BINDING OF SUBSTRATE IN A TERNARY COMPLEX OF HORSE LIVER REMARK 1 TITL 2 ALCOHOL DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 257 14349 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.EKLUND,J.P.SAMMA,L.WALLEN,C.I.BRANDEN,A.AKESON,T.A.JONES REMARK 1 TITL STRUCTURE OF A TRICLINIC TERNARY COMPLEX OF HORSE LIVER REMARK 1 TITL 2 ALCOHOL DEHYDROGENASE AT 2.9 ANGSTROM RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 146 561 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.EKLUND,B.NORDSTROM,E.ZEPPEZAUER,G.SODERLUND,I.OHLSSON, REMARK 1 AUTH 2 T.BOIWE,B.O.SODERBERG,O.TAPIA,C.I.BRANDEN,A.AKESON REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF HORSE LIVER ALCOHOL REMARK 1 TITL 2 DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 102 27 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 199422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.45000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5791 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5354 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7848 ; 1.843 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12531 ; 3.791 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 6.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 913 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6316 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1052 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1038 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5666 ; 0.108 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3704 ; 1.813 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5988 ; 2.454 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2087 ; 3.138 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1860 ; 4.551 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1MGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-01; 11-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS REMARK 200 BEAMLINE : NULL; 17-ID REMARK 200 X-RAY GENERATOR MODEL : RIGAKU; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.0000 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : CONFOCAL OSMIC; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 199442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.250 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.46 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, PH 7.0, DIALYSIS, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT WHICH CONSISTS OF ONE REMARK 300 BIOLOGICALLY ACTIVE DIMERIC MOLECULE AB REMARK 300 (2 CHAINS). SEE REMARK 350 FOR INFORMATION REMARK 300 ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 161 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 CYS A 282 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 LEU B 61 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP B 273 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 CYS B 282 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -13.18 -141.52 REMARK 500 THR A 143 -73.80 -125.07 REMARK 500 SER A 144 75.87 57.93 REMARK 500 CYS A 174 -77.64 -156.36 REMARK 500 ILE A 269 -59.06 -124.20 REMARK 500 ILE A 368 -88.52 -101.25 REMARK 500 HIS B 67 -11.58 -144.42 REMARK 500 THR B 143 -60.42 -121.81 REMARK 500 SER B 144 75.27 46.75 REMARK 500 CYS B 174 -75.69 -158.51 REMARK 500 ILE B 269 -56.71 -124.71 REMARK 500 ILE B 368 -81.22 -99.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 108.6 REMARK 620 3 CYS A 174 SG 128.5 114.5 REMARK 620 4 HOH A 570 O 100.6 96.6 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 110.6 REMARK 620 3 CYS A 103 SG 117.8 105.6 REMARK 620 4 CYS A 111 SG 102.5 118.4 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 107.5 REMARK 620 3 CYS B 174 SG 129.4 113.8 REMARK 620 4 HOH B 838 O 103.9 95.5 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 109.5 REMARK 620 3 CYS B 103 SG 115.9 105.9 REMARK 620 4 CYS B 111 SG 103.1 119.4 103.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFB B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFB B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HLD RELATED DB: PDB REMARK 900 STRUCTURES OF HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD+ REMARK 900 AND SUBSTITUTED BENZYL ALCOHOLS REMARK 900 RELATED ID: 1MG0 RELATED DB: PDB REMARK 900 HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD+ AND 2,3- REMARK 900 DIFLUOROBENZYL ALCOHOL DBREF 1MGO A 1 374 UNP P00327 ADHE_HORSE 1 374 DBREF 1MGO B 1 374 UNP P00327 ADHE_HORSE 1 374 SEQADV 1MGO ALA A 93 UNP P00327 PHE 93 ENGINEERED MUTATION SEQADV 1MGO ALA B 93 UNP P00327 PHE 93 ENGINEERED MUTATION SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU ALA THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 A 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 A 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU ALA THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 B 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 B 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 B 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 B 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET NAD A 377 44 HET ZN B 375 1 HET ZN B 376 1 HET NAD B 377 44 HET PFB B 600 13 HET PFB B 601 13 HET MPD B 602 8 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PFB 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 PFB 2(C7 H3 F5 O) FORMUL 11 MPD C6 H14 O2 FORMUL 12 HOH *465(H2 O) HELIX 1 1 CYS A 46 GLY A 55 1 10 HELIX 2 2 CYS A 100 HIS A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 LYS A 185 1 12 HELIX 6 6 GLY A 201 ALA A 214 1 14 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 GLY A 236 1 9 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 SER A 258 1 10 HELIX 11 11 ARG A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 SER A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 PRO A 344 5 3 HELIX 16 16 LYS A 354 SER A 364 1 11 HELIX 17 17 CYS B 46 SER B 54 1 9 HELIX 18 18 CYS B 100 HIS B 105 1 6 HELIX 19 19 PRO B 165 CYS B 170 1 6 HELIX 20 20 LEU B 171 GLY B 173 5 3 HELIX 21 21 CYS B 174 LYS B 185 1 12 HELIX 22 22 GLY B 201 ALA B 214 1 14 HELIX 23 23 ASN B 225 ASP B 227 5 3 HELIX 24 24 LYS B 228 GLY B 236 1 9 HELIX 25 25 ASN B 242 TYR B 246 5 5 HELIX 26 26 PRO B 249 SER B 258 1 10 HELIX 27 27 ARG B 271 CYS B 282 1 12 HELIX 28 28 PRO B 305 SER B 310 1 6 HELIX 29 29 ILE B 318 PHE B 322 5 5 HELIX 30 30 LYS B 323 ALA B 337 1 15 HELIX 31 31 LEU B 342 PRO B 344 5 3 HELIX 32 32 LYS B 354 SER B 364 1 11 SHEET 1 A 4 ILE A 7 VAL A 13 0 SHEET 2 A 4 SER A 22 VAL A 28 -1 O SER A 22 N VAL A 13 SHEET 3 A 4 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 4 A 4 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 VAL A 157 LYS A 159 0 SHEET 2 B 5 LYS A 88 PRO A 91 -1 N ILE A 90 O ALA A 158 SHEET 3 B 5 GLU A 68 ILE A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 B 5 GLU A 35 GLY A 44 -1 N LYS A 39 O ILE A 72 SHEET 5 B 5 TYR A 149 ASP A 153 -1 O THR A 150 N ILE A 38 SHEET 1 C 6 VAL A 157 LYS A 159 0 SHEET 2 C 6 LYS A 88 PRO A 91 -1 N ILE A 90 O ALA A 158 SHEET 3 C 6 GLU A 68 ILE A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 C 6 GLU A 35 GLY A 44 -1 N LYS A 39 O ILE A 72 SHEET 5 C 6 ARG A 369 THR A 373 -1 O LEU A 372 N THR A 43 SHEET 6 C 6 ILE A 346 PRO A 351 1 N HIS A 348 O ILE A 371 SHEET 1 D12 GLU A 239 VAL A 241 0 SHEET 2 D12 ARG A 218 VAL A 222 1 N GLY A 221 O VAL A 241 SHEET 3 D12 THR A 194 PHE A 198 1 N CYS A 195 O ILE A 220 SHEET 4 D12 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D12 VAL A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D12 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 SHEET 7 D12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 D12 VAL B 288 ILE B 291 1 N ILE B 291 O LYS B 315 SHEET 9 D12 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 D12 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 D12 ARG B 218 VAL B 222 1 O ILE B 220 N CYS B 195 SHEET 12 D12 GLU B 239 VAL B 241 1 O GLU B 239 N GLY B 221 SHEET 1 E 2 LEU A 301 MET A 303 0 SHEET 2 E 2 LEU B 301 MET B 303 -1 O MET B 303 N LEU A 301 SHEET 1 F 4 ILE B 7 VAL B 13 0 SHEET 2 F 4 SER B 22 VAL B 28 -1 O VAL B 28 N ILE B 7 SHEET 3 F 4 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 4 F 4 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 G 5 VAL B 157 LYS B 159 0 SHEET 2 G 5 LYS B 88 PRO B 91 -1 N ILE B 90 O ALA B 158 SHEET 3 G 5 GLU B 68 ILE B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 G 5 GLU B 35 GLY B 44 -1 N LYS B 39 O ILE B 72 SHEET 5 G 5 TYR B 149 ASP B 153 -1 O THR B 150 N ILE B 38 SHEET 1 H 6 VAL B 157 LYS B 159 0 SHEET 2 H 6 LYS B 88 PRO B 91 -1 N ILE B 90 O ALA B 158 SHEET 3 H 6 GLU B 68 ILE B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 H 6 GLU B 35 GLY B 44 -1 N LYS B 39 O ILE B 72 SHEET 5 H 6 ARG B 369 THR B 373 -1 O LEU B 372 N THR B 43 SHEET 6 H 6 ILE B 346 PRO B 351 1 N LEU B 350 O ILE B 371 LINK SG CYS A 46 ZN ZN A 375 1555 1555 2.35 LINK NE2 HIS A 67 ZN ZN A 375 1555 1555 2.05 LINK SG CYS A 97 ZN ZN A 376 1555 1555 2.26 LINK SG CYS A 100 ZN ZN A 376 1555 1555 2.34 LINK SG CYS A 103 ZN ZN A 376 1555 1555 2.31 LINK SG CYS A 111 ZN ZN A 376 1555 1555 2.39 LINK SG CYS A 174 ZN ZN A 375 1555 1555 2.21 LINK ZN ZN A 375 O HOH A 570 1555 1555 2.12 LINK SG CYS B 46 ZN ZN B 375 1555 1555 2.33 LINK NE2 HIS B 67 ZN ZN B 375 1555 1555 2.04 LINK SG CYS B 97 ZN ZN B 376 1555 1555 2.32 LINK SG CYS B 100 ZN ZN B 376 1555 1555 2.36 LINK SG CYS B 103 ZN ZN B 376 1555 1555 2.32 LINK SG CYS B 111 ZN ZN B 376 1555 1555 2.40 LINK SG CYS B 174 ZN ZN B 375 1555 1555 2.27 LINK ZN ZN B 375 O HOH B 838 1555 1555 2.08 CISPEP 1 LEU A 61 PRO A 62 0 -0.96 CISPEP 2 LEU B 61 PRO B 62 0 0.05 SITE 1 AC1 5 CYS A 46 HIS A 67 CYS A 174 NAD A 377 SITE 2 AC1 5 HOH A 570 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 5 CYS B 46 HIS B 67 CYS B 174 NAD B 377 SITE 2 AC3 5 HOH B 838 SITE 1 AC4 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC5 30 ARG A 47 SER A 48 HIS A 51 CYS A 174 SITE 2 AC5 30 THR A 178 GLY A 199 GLY A 201 GLY A 202 SITE 3 AC5 30 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC5 30 VAL A 268 ILE A 269 ARG A 271 VAL A 292 SITE 5 AC5 30 GLY A 293 VAL A 294 ALA A 317 ILE A 318 SITE 6 AC5 30 PHE A 319 ARG A 369 ZN A 375 HOH A 383 SITE 7 AC5 30 HOH A 392 HOH A 422 HOH A 491 HOH A 512 SITE 8 AC5 30 HOH A 571 HOH A 580 SITE 1 AC6 31 ARG B 47 SER B 48 HIS B 51 CYS B 174 SITE 2 AC6 31 THR B 178 GLY B 199 GLY B 201 GLY B 202 SITE 3 AC6 31 VAL B 203 ASP B 223 ILE B 224 VAL B 268 SITE 4 AC6 31 ILE B 269 ARG B 271 VAL B 292 GLY B 293 SITE 5 AC6 31 VAL B 294 ALA B 317 ILE B 318 PHE B 319 SITE 6 AC6 31 ARG B 369 ZN B 375 MPD B 602 HOH B 611 SITE 7 AC6 31 HOH B 618 HOH B 620 HOH B 626 HOH B 655 SITE 8 AC6 31 HOH B 726 HOH B 749 HOH B 752 SITE 1 AC7 5 THR B 122 SER B 128 PRO B 136 ILE B 137 SITE 2 AC7 5 HIS B 138 SITE 1 AC8 7 LEU A 57 LEU A 116 SER A 117 ILE A 318 SITE 2 AC8 7 MET B 306 LEU B 309 SER B 310 SITE 1 AC9 6 ALA B 93 THR B 94 LEU B 141 NAD B 377 SITE 2 AC9 6 HOH B 838 HOH B 839 CRYST1 44.144 51.308 93.481 91.98 103.01 109.81 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022653 0.008160 0.006267 0.00000 SCALE2 0.000000 0.020716 0.002524 0.00000 SCALE3 0.000000 0.000000 0.011060 0.00000