HEADER OXIDOREDUCTASE 21-OCT-96 1MHY TITLE METHANE MONOOXYGENASE HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHANE MONOOXYGENASE HYDROXYLASE; COMPND 3 CHAIN: B; COMPND 4 EC: 1.14.13.25; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: METHANE MONOOXYGENASE HYDROXYLASE; COMPND 7 CHAIN: D; COMPND 8 EC: 1.14.13.25; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: METHANE MONOOXYGENASE HYDROXYLASE; COMPND 11 CHAIN: G; COMPND 12 EC: 1.14.13.25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOSINUS TRICHOSPORIUM; SOURCE 3 ORGANISM_TAXID: 426; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: METHYLOSINUS TRICHOSPORIUM; SOURCE 6 ORGANISM_TAXID: 426; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: METHYLOSINUS TRICHOSPORIUM; SOURCE 9 ORGANISM_TAXID: 426 KEYWDS OXIDOREDUCTASE, MONOOXYGENASE, NADP, ONE-CARBON METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR N.ELANGO,R.RADHAKRISHNAN,W.A.FROLAND,B.J.WALLER,C.A.EARHART, AUTHOR 2 J.D.LIPSCOMB,D.H.OHLENDORF REVDAT 8 22-MAY-24 1MHY 1 REMARK REVDAT 7 09-AUG-23 1MHY 1 REMARK REVDAT 6 21-DEC-22 1MHY 1 REMARK SEQADV LINK ATOM REVDAT 5 29-NOV-17 1MHY 1 HELIX REVDAT 4 16-NOV-11 1MHY 1 HETATM REVDAT 3 13-JUL-11 1MHY 1 VERSN REVDAT 2 24-FEB-09 1MHY 1 VERSN REVDAT 1 15-MAY-97 1MHY 0 JRNL AUTH N.ELANGO,R.RADHAKRISHNAN,W.A.FROLAND,B.J.WALLAR,C.A.EARHART, JRNL AUTH 2 J.D.LIPSCOMB,D.H.OHLENDORF JRNL TITL CRYSTAL STRUCTURE OF THE HYDROXYLASE COMPONENT OF METHANE JRNL TITL 2 MONOOXYGENASE FROM METHYLOSINUS TRICHOSPORIUM OB3B JRNL REF PROTEIN SCI. V. 6 556 1997 JRNL REFN ISSN 0961-8368 JRNL PMID 9070438 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 75570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 733 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.650 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.14 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.580 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-94 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 9 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87489 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: CHAINS B, D, AND G OF PDB ENTRY 1MMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FROLAND W.A. ET AL. (1994) J. MOL. REMARK 280 BIOL. VOL. 236:379-381. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 132.24500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 132.24500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 132.24500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.59500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 132.24500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.59500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 40200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 142.38000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 677 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 678 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 VAL B 9 REMARK 465 THR B 10 REMARK 465 LYS B 394 REMARK 465 ASN B 395 REMARK 465 MET D 6 REMARK 465 ALA D 7 REMARK 465 ILE D 8 REMARK 465 SER D 9 REMARK 465 LEU D 10 REMARK 465 ALA D 11 REMARK 465 THR D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 ALA D 15 REMARK 465 THR D 16 REMARK 465 MET G 1 REMARK 465 ALA G 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 102 H2 HOH B 575 0.95 REMARK 500 HE ARG D 98 H1 HOH D 950 1.06 REMARK 500 HE ARG D 476 H1 HOH D 976 1.07 REMARK 500 H1 HOH B 436 H2 HOH B 472 1.09 REMARK 500 HE ARG G 116 H1 HOH G 200 1.09 REMARK 500 HZ2 LYS D 303 H1 HOH D 1029 1.12 REMARK 500 H2 HOH D 817 H1 HOH D 1027 1.13 REMARK 500 HE21 GLN D 78 HE22 GLN D 150 1.14 REMARK 500 HD1 HIS D 500 H ARG D 502 1.16 REMARK 500 HE ARG B 264 HE21 GLN B 288 1.17 REMARK 500 HE2 HIS D 161 H1 HOH D 910 1.17 REMARK 500 HE ARG D 419 HD1 HIS D 446 1.17 REMARK 500 HE2 HIS B 166 HE2 HIS B 252 1.18 REMARK 500 HE21 GLN G 117 H1 HOH G 257 1.18 REMARK 500 HE21 GLN B 194 H ALA D 64 1.18 REMARK 500 HZ2 LYS G 60 H2 HOH G 268 1.21 REMARK 500 HD22 ASN B 192 H2 HOH B 488 1.22 REMARK 500 H2 HOH B 408 H1 HOH B 634 1.23 REMARK 500 FE FE D 801 H2 HOH D 803 1.24 REMARK 500 HG SER B 287 HE22 GLN B 288 1.25 REMARK 500 HD1 HIS B 80 HH11 ARG G 144 1.25 REMARK 500 HG1 THR D 48 H TYR D 50 1.26 REMARK 500 HZ3 LYS D 61 H2 HOH D 997 1.26 REMARK 500 HZ2 LYS G 105 H2 HOH G 190 1.26 REMARK 500 H ASN G 127 H2 HOH G 173 1.27 REMARK 500 HG1 THR B 91 HD22 ASN B 245 1.28 REMARK 500 HH TYR B 38 H1 HOH D 913 1.28 REMARK 500 HD22 ASN B 149 HE ARG B 200 1.28 REMARK 500 HH12 ARG B 270 H2 HOH B 495 1.28 REMARK 500 H2 HOH B 459 H1 HOH B 488 1.28 REMARK 500 HD1 HIS D 147 FE FE D 801 1.28 REMARK 500 HZ1 LYS D 134 H2 HOH D 834 1.28 REMARK 500 HH12 ARG D 186 H2 HOH D 850 1.29 REMARK 500 HD21 ASN B 149 HH21 ARG B 200 1.29 REMARK 500 HD1 HIS D 246 FE FE D 802 1.30 REMARK 500 H2 HOH B 519 H2 HOH B 564 1.30 REMARK 500 H1 HOH B 483 H1 HOH B 489 1.31 REMARK 500 H GLU D 477 H2 HOH D 967 1.31 REMARK 500 HZ2 LYS G 100 H1 HOH G 256 1.32 REMARK 500 H1 HOH G 249 H1 HOH G 279 1.32 REMARK 500 H1 HOH D 844 H2 HOH D 866 1.33 REMARK 500 HZ2 LYS D 185 H1 HOH B 430 1.33 REMARK 500 HZ3 LYS D 74 H1 HOH D 1128 1.33 REMARK 500 HH21 ARG D 307 H1 HOH D 1028 1.33 REMARK 500 HZ1 LYS B 205 H1 HOH B 603 1.34 REMARK 500 OH TYR B 372 H1 HOH B 554 1.46 REMARK 500 OH TYR G 54 H1 HOH G 178 1.56 REMARK 500 O MET D 70 H1 HOH D 897 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG B 137 H2 HOH B 520 4575 1.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 100 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 46 -152.50 -96.46 REMARK 500 ALA B 67 120.09 -35.23 REMARK 500 VAL B 254 -72.47 -119.16 REMARK 500 THR B 258 -72.55 -110.66 REMARK 500 PHE B 267 -67.49 -103.76 REMARK 500 ALA B 351 -63.16 -120.87 REMARK 500 TYR B 372 -59.01 -128.74 REMARK 500 ASP D 84 -77.64 -99.74 REMARK 500 ASP D 170 23.87 -156.14 REMARK 500 ALA D 189 -79.46 -131.63 REMARK 500 VAL D 207 -62.86 -104.95 REMARK 500 ALA D 339 38.77 -75.79 REMARK 500 TYR D 340 -47.72 -131.38 REMARK 500 HIS D 382 -71.12 -112.28 REMARK 500 HIS D 413 67.41 -107.20 REMARK 500 LYS D 493 -22.53 -145.82 REMARK 500 SER G 42 169.93 73.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 114 OE1 REMARK 620 2 GLU D 144 OE1 85.3 REMARK 620 3 HIS D 147 ND1 99.2 95.0 REMARK 620 4 HOH D 803 O 177.2 97.1 79.3 REMARK 620 5 HOH D 804 O 96.0 91.2 164.0 85.3 REMARK 620 6 HOH D 805 O 90.4 175.7 85.0 87.1 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 144 OE2 REMARK 620 2 GLU D 209 OE2 83.0 REMARK 620 3 GLU D 243 OE2 162.6 96.1 REMARK 620 4 HIS D 246 ND1 81.1 96.4 81.8 REMARK 620 5 HOH D 803 O 87.9 167.2 95.3 90.9 REMARK 620 6 HOH D 804 O 79.1 91.7 118.3 157.5 77.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: FE2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THE PROPOSED ACTIVE SITE FOR THIS ENZYME REMARK 800 CONSISTS OF BIS-MU-OXO BRIDGED DIIRONS LIGATED TO RESIDUES D 114, REMARK 800 D 144, D 147, D 209, D 243, D 246, HOH1, HOH 2, AND HOH 3. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 802 DBREF 1MHY B 1 395 UNP P27354 MEMB_METTR 1 394 DBREF 1MHY D 6 526 UNP P27353 MEMA_METTR 1 525 DBREF 1MHY G 1 169 UNP P27355 MEMG_METTR 1 169 SEQADV 1MHY TYR B 255 UNP P27354 MET 255 CONFLICT SEQADV 1MHY ASP B 256 UNP P27354 ILE 256 CONFLICT SEQADV 1MHY VAL B 348 UNP P27354 INSERTION SEQADV 1MHY ALA B 349 UNP P27354 SER 348 CONFLICT SEQADV 1MHY GLY B 350 UNP P27354 ARG 349 CONFLICT SEQADV 1MHY THR B 352 UNP P27354 ASP 351 CONFLICT SEQADV 1MHY ASP B 353 UNP P27354 ARG 352 CONFLICT SEQADV 1MHY B UNP P27354 ARG 354 DELETION SEQADV 1MHY B UNP P27354 ARG 355 DELETION SEQADV 1MHY B UNP P27354 ARG 356 DELETION SEQADV 1MHY B UNP P27354 LEU 357 DELETION SEQADV 1MHY B UNP P27354 ARG 358 DELETION SEQADV 1MHY B UNP P27354 GLY 359 DELETION SEQADV 1MHY GLY B 356 UNP P27354 ALA 361 CONFLICT SEQADV 1MHY VAL B 357 UNP P27354 ALA 362 CONFLICT SEQADV 1MHY GLU B 359 UNP P27354 SER 364 CONFLICT SEQADV 1MHY LEU B 361 UNP P27354 ILE 366 CONFLICT SEQADV 1MHY GLN B 362 UNP P27354 GLY 367 CONFLICT SEQADV 1MHY VAL B 364 UNP P27354 INSERTION SEQADV 1MHY PHE B 365 UNP P27354 INSERTION SEQADV 1MHY GLY B 366 UNP P27354 INSERTION SEQADV 1MHY ASP B 367 UNP P27354 INSERTION SEQADV 1MHY TRP B 368 UNP P27354 INSERTION SEQADV 1MHY LYS B 369 UNP P27354 SER 369 CONFLICT SEQADV 1MHY ASP B 371 UNP P27354 INSERTION SEQADV 1MHY TYR B 372 UNP P27354 THR 371 CONFLICT SEQADV 1MHY ALA B 373 UNP P27354 PRO 372 INSERTION SEQADV 1MHY D UNP P27353 ASP 12 DELETION SEQADV 1MHY D UNP P27353 ALA 13 DELETION SEQADV 1MHY D UNP P27353 LEU 14 DELETION SEQADV 1MHY D UNP P27353 LYS 15 DELETION SEQADV 1MHY D UNP P27353 VAL 16 DELETION SEQADV 1MHY TRP D 37 UNP P27353 ARG 37 CONFLICT SEQADV 1MHY GLY D 195 UNP P27353 ARG 195 CONFLICT SEQADV 1MHY GLU D 209 UNP P27353 ASP 209 CONFLICT SEQADV 1MHY ALA D 210 UNP P27353 THR 210 CONFLICT SEQADV 1MHY SER D 225 UNP P27353 ILE 225 CONFLICT SEQADV 1MHY ALA D 226 UNP P27353 GLY 226 CONFLICT SEQADV 1MHY PRO D 329 UNP P27353 INSERTION SEQADV 1MHY SER D 331 UNP P27353 VAL 330 CONFLICT SEQADV 1MHY GLY D 357 UNP P27353 ALA 356 CONFLICT SEQADV 1MHY ALA G 88 UNP P27355 ARG 88 CONFLICT SEQADV 1MHY GLU G 109 UNP P27355 ASP 109 CONFLICT SEQADV 1MHY ALA G 110 UNP P27355 GLY 110 CONFLICT SEQADV 1MHY ARG G 160 UNP P27355 PRO 160 CONFLICT SEQRES 1 B 395 MET SER GLN PRO GLN SER SER GLN VAL THR LYS ARG GLY SEQRES 2 B 395 LEU THR ASP PRO GLU ARG ALA ALA ILE ILE ALA ALA ALA SEQRES 3 B 395 VAL PRO ASP HIS ALA LEU ASP THR GLN ARG LYS TYR HIS SEQRES 4 B 395 TYR PHE ILE GLN PRO ARG TRP LYS PRO LEU SER GLU TYR SEQRES 5 B 395 GLU GLN LEU SER CYS TYR ALA GLN PRO ASN PRO ASP TRP SEQRES 6 B 395 ILE ALA GLY GLY LEU ASP TRP GLY ASP TRP THR GLN LYS SEQRES 7 B 395 PHE HIS GLY GLY ARG PRO SER TRP GLY ASN GLU SER THR SEQRES 8 B 395 GLU LEU ARG THR THR ASP TRP TYR ARG HIS ARG ASP PRO SEQRES 9 B 395 ALA ARG ARG TRP HIS HIS PRO TYR VAL LYS ASP LYS SER SEQRES 10 B 395 GLU GLU ALA ARG TYR THR GLN ARG PHE LEU ALA ALA TYR SEQRES 11 B 395 SER SER GLU GLY SER ILE ARG THR ILE ASP PRO TYR TRP SEQRES 12 B 395 ARG ASP GLU ILE LEU ASN LYS TYR PHE GLY ALA LEU LEU SEQRES 13 B 395 TYR SER GLU TYR GLY LEU PHE ASN ALA HIS SER SER VAL SEQRES 14 B 395 GLY ARG ASP CYS LEU SER ASP THR ILE ARG GLN THR ALA SEQRES 15 B 395 VAL PHE ALA ALA LEU ASP LYS VAL ASP ASN ALA GLN MET SEQRES 16 B 395 ILE GLN MET GLU ARG LEU PHE ILE ALA LYS LEU VAL PRO SEQRES 17 B 395 GLY PHE ASP ALA SER THR ASP VAL PRO LYS LYS ILE TRP SEQRES 18 B 395 THR THR ASP PRO ILE TYR SER GLY ALA ARG ALA THR VAL SEQRES 19 B 395 GLN GLU ILE TRP GLN GLY VAL GLN ASP TRP ASN GLU ILE SEQRES 20 B 395 LEU TRP ALA GLY HIS ALA VAL TYR ASP ALA THR PHE GLY SEQRES 21 B 395 GLN PHE ALA ARG ARG GLU PHE PHE GLN ARG LEU ALA THR SEQRES 22 B 395 VAL TYR GLY ASP THR LEU THR PRO PHE PHE THR ALA GLN SEQRES 23 B 395 SER GLN THR TYR PHE GLN THR THR ARG GLY ALA ILE ASP SEQRES 24 B 395 ASP LEU PHE VAL TYR CYS LEU ALA ASN ASP SER GLU PHE SEQRES 25 B 395 GLY ALA HIS ASN ARG THR PHE LEU ASN ALA TRP THR GLU SEQRES 26 B 395 HIS TYR LEU ALA SER SER VAL ALA ALA LEU LYS ASP PHE SEQRES 27 B 395 VAL GLY LEU TYR ALA LYS VAL GLU LYS VAL ALA GLY ALA SEQRES 28 B 395 THR ASP SER ALA GLY VAL SER GLU ALA LEU GLN ARG VAL SEQRES 29 B 395 PHE GLY ASP TRP LYS ILE ASP TYR ALA ASP LYS ILE GLY SEQRES 30 B 395 PHE ARG VAL ASP VAL ASP GLN LYS VAL ASP ALA VAL LEU SEQRES 31 B 395 ALA GLY TYR LYS ASN SEQRES 1 D 521 MET ALA ILE SER LEU ALA THR LYS ALA ALA THR ASN ARG SEQRES 2 D 521 ALA PRO VAL GLY VAL GLU PRO GLN GLU VAL HIS LYS TRP SEQRES 3 D 521 LEU GLN SER PHE ASN TRP ASP PHE LYS GLU ASN ARG THR SEQRES 4 D 521 LYS TYR PRO THR LYS TYR HIS MET ALA ASN GLU THR LYS SEQRES 5 D 521 GLU GLN PHE LYS VAL ILE ALA LYS GLU TYR ALA ARG MET SEQRES 6 D 521 GLU ALA ALA LYS ASP GLU ARG GLN PHE GLY THR LEU LEU SEQRES 7 D 521 ASP GLY LEU THR ARG LEU GLY ALA GLY ASN LYS VAL HIS SEQRES 8 D 521 PRO ARG TRP GLY GLU THR MET LYS VAL ILE SER ASN PHE SEQRES 9 D 521 LEU GLU VAL GLY GLU TYR ASN ALA ILE ALA ALA SER ALA SEQRES 10 D 521 MET LEU TRP ASP SER ALA THR ALA ALA GLU GLN LYS ASN SEQRES 11 D 521 GLY TYR LEU ALA GLN VAL LEU ASP GLU ILE ARG HIS THR SEQRES 12 D 521 HIS GLN CYS ALA PHE ILE ASN HIS TYR TYR SER LYS HIS SEQRES 13 D 521 TYR HIS ASP PRO ALA GLY HIS ASN ASP ALA ARG ARG THR SEQRES 14 D 521 ARG ALA ILE GLY PRO LEU TRP LYS GLY MET LYS ARG VAL SEQRES 15 D 521 PHE ALA ASP GLY PHE ILE SER GLY ASP ALA VAL GLU CYS SEQRES 16 D 521 SER VAL ASN LEU GLN LEU VAL GLY GLU ALA CYS PHE THR SEQRES 17 D 521 ASN PRO LEU ILE VAL ALA VAL THR GLU TRP ALA SER ALA SEQRES 18 D 521 ASN GLY ASP GLU ILE THR PRO THR VAL PHE LEU SER VAL SEQRES 19 D 521 GLU THR ASP GLU LEU ARG HIS MET ALA ASN GLY TYR GLN SEQRES 20 D 521 THR VAL VAL SER ILE ALA ASN ASP PRO ALA SER ALA LYS SEQRES 21 D 521 PHE LEU ASN THR ASP LEU ASN ASN ALA PHE TRP THR GLN SEQRES 22 D 521 GLN LYS TYR PHE THR PRO VAL LEU GLY TYR LEU PHE GLU SEQRES 23 D 521 TYR GLY SER LYS PHE LYS VAL GLU PRO TRP VAL LYS THR SEQRES 24 D 521 TRP ASN ARG TRP VAL SER GLU ASP TRP GLY GLY ILE TRP SEQRES 25 D 521 ILE GLY ARG LEU GLY LYS TYR GLY VAL GLU SER PRO ARG SEQRES 26 D 521 SER LEU ARG ASP ALA LYS ARG ASP ALA TYR TRP ALA HIS SEQRES 27 D 521 HIS ASP LEU ALA LEU ALA ALA TYR ALA MET TRP PRO LEU SEQRES 28 D 521 GLY PHE ALA ARG LEU ALA LEU PRO ASP GLU GLU ASP GLN SEQRES 29 D 521 ALA TRP PHE GLU ALA ASN TYR PRO GLY TRP ALA ASP HIS SEQRES 30 D 521 TYR GLY LYS ILE PHE ASN GLU TRP LYS LYS LEU GLY TYR SEQRES 31 D 521 GLU ASP PRO LYS SER GLY PHE ILE PRO TYR GLN TRP LEU SEQRES 32 D 521 LEU ALA ASN GLY HIS ASP VAL TYR ILE ASP ARG VAL SER SEQRES 33 D 521 GLN VAL PRO PHE ILE PRO SER LEU ALA LYS GLY THR GLY SEQRES 34 D 521 SER LEU ARG VAL HIS GLU PHE ASN GLY LYS LYS HIS SER SEQRES 35 D 521 LEU THR ASP ASP TRP GLY GLU ARG GLN TRP LEU ILE GLU SEQRES 36 D 521 PRO GLU ARG TYR GLU CYS HIS ASN VAL PHE GLU GLN TYR SEQRES 37 D 521 GLU GLY ARG GLU LEU SER GLU VAL ILE ALA GLU GLY HIS SEQRES 38 D 521 GLY VAL ARG SER ASP GLY LYS THR LEU ILE ALA GLN PRO SEQRES 39 D 521 HIS THR ARG GLY ASP ASN LEU TRP THR LEU GLU ASP ILE SEQRES 40 D 521 LYS ARG ALA GLY CYS VAL PHE PRO ASP PRO LEU ALA LYS SEQRES 41 D 521 PHE SEQRES 1 G 169 MET ALA LYS ARG GLU PRO ILE HIS ASP ASN SER ILE ARG SEQRES 2 G 169 THR GLU TRP GLU ALA LYS ILE ALA LYS LEU THR SER VAL SEQRES 3 G 169 ASP GLN ALA THR LYS PHE ILE GLN ASP PHE ARG LEU ALA SEQRES 4 G 169 TYR THR SER PRO PHE ARG LYS SER TYR ASP ILE ASP VAL SEQRES 5 G 169 ASP TYR GLN TYR ILE GLU ARG LYS ILE GLU GLU LYS LEU SEQRES 6 G 169 SER VAL LEU LYS THR GLU LYS LEU PRO VAL ALA ASP LEU SEQRES 7 G 169 ILE THR LYS ALA THR THR GLY GLU ASP ALA ALA ALA VAL SEQRES 8 G 169 GLU ALA THR TRP ILE ALA LYS ILE LYS ALA ALA LYS SER SEQRES 9 G 169 LYS TYR GLU ALA GLU ALA ILE HIS ILE GLU PHE ARG GLN SEQRES 10 G 169 LEU TYR LYS PRO PRO VAL LEU PRO VAL ASN VAL PHE LEU SEQRES 11 G 169 ARG THR ASP ALA ALA LEU GLY THR VAL LEU MET GLU ILE SEQRES 12 G 169 ARG ASN THR ASP TYR TYR GLY THR PRO LEU GLU GLY LEU SEQRES 13 G 169 ARG LYS GLU ARG GLY VAL LYS VAL LEU HIS LEU GLN ALA HET FE D 801 1 HET FE D 802 1 HETNAM FE FE (III) ION FORMUL 4 FE 2(FE 3+) FORMUL 6 HOH *733(H2 O) HELIX 1 B1 PRO B 17 ALA B 26 1 10 HELIX 2 B2 GLU B 51 SER B 56 1 6 HELIX 3 BA HIS B 109 GLU B 133 1 25 HELIX 4 BB PRO B 141 ASP B 172 1 32 HELIX 5 BC ASP B 176 LEU B 206 1 31 HELIX 6 B3 ASP B 215 THR B 223 1 9 HELIX 7 BD PRO B 225 GLN B 239 1 15 HELIX 8 BE TRP B 244 ALA B 272 1 29 HELIX 9 BF THR B 280 ASN B 308 1 29 HELIX 10 BG GLY B 313 LYS B 344 1SEE REMARK 650 32 HELIX 11 BH SER B 354 LYS B 375 1SEE REMARK 650 22 HELIX 12 B4 VAL B 382 LEU B 390 1 9 HELIX 13 D1 PRO D 25 PHE D 35 1SEE REMARK 650 11 HELIX 14 DA ALA D 64 LEU D 83 1 20 HELIX 15 DB PRO D 97 SER D 127 1 31 HELIX 16 DC ALA D 131 HIS D 161 1 31 HELIX 17 D2 ALA D 171 THR D 174 1 4 HELIX 18 DD PRO D 179 ILE D 193 1 15 HELIX 19 DE ALA D 197 ALA D 226 1 30 HELIX 20 DF ILE D 231 ILE D 257 1 27 HELIX 21 DG PRO D 261 TYR D 292 1 32 HELIX 22 DH TRP D 301 LEU D 321 1SEE REMARK 650 21 HELIX 23 D4 LEU D 332 ASP D 338 1 7 HELIX 24 D5 ALA D 342 ALA D 352 1 11 HELIX 25 D6 GLU D 366 ASN D 375 1 10 HELIX 26 D7 TYR D 383 LYS D 392 1 10 HELIX 27 D8 PRO D 404 ALA D 410 1 7 HELIX 28 D9 ASP D 451 ILE D 459 1 9 HELIX 29 D10 VAL D 469 TYR D 473 1 5 HELIX 30 D11 LEU D 478 GLU D 484 1 7 HELIX 31 D12 LEU D 509 ARG D 514 1 6 HELIX 32 G1 SER G 11 ALA G 21 1 11 HELIX 33 G2 VAL G 26 TYR G 40 1 15 HELIX 34 G3 TYR G 54 LYS G 72 1 19 HELIX 35 G4 VAL G 75 THR G 80 1 6 HELIX 36 G5 ALA G 88 LYS G 100 1 13 HELIX 37 G6 LYS G 105 TYR G 119 1 15 HELIX 38 G7 VAL G 126 ARG G 144 1 19 HELIX 39 G8 LEU G 153 ARG G 160 1 8 SHEET 1 A 3 LYS D 444 LEU D 448 0 SHEET 2 A 3 ARG D 437 PHE D 441 -1 N PHE D 441 O LYS D 444 SHEET 3 A 3 LYS G 163 LEU G 167 -1 N HIS G 166 O VAL D 438 LINK OE1 GLU D 114 FE FE D 801 1555 1555 1.89 LINK OE1 GLU D 144 FE FE D 801 1555 1555 2.05 LINK OE2 GLU D 144 FE FE D 802 1555 1555 2.29 LINK ND1 HIS D 147 FE FE D 801 1555 1555 2.23 LINK OE2 GLU D 209 FE FE D 802 1555 1555 2.01 LINK OE2 GLU D 243 FE FE D 802 1555 1555 1.86 LINK ND1 HIS D 246 FE FE D 802 1555 1555 2.26 LINK FE FE D 801 O HOH D 803 1555 1555 1.71 LINK FE FE D 801 O HOH D 804 1555 1555 2.15 LINK FE FE D 801 O HOH D 805 1555 1555 2.23 LINK FE FE D 802 O HOH D 803 1555 1555 2.04 LINK FE FE D 802 O HOH D 804 1555 1555 2.17 CISPEP 1 PRO G 121 PRO G 122 0 0.61 SITE 1 FE2 11 FE D 801 FE D 802 HOH D 803 HOH D 804 SITE 2 FE2 11 HOH D 805 GLU D 114 GLU D 144 GLU D 209 SITE 3 FE2 11 GLU D 243 HIS D 147 HIS D 246 SITE 1 AC1 7 GLU D 114 GLU D 144 HIS D 147 FE D 802 SITE 2 AC1 7 HOH D 803 HOH D 804 HOH D 805 SITE 1 AC2 7 GLU D 144 GLU D 209 GLU D 243 HIS D 246 SITE 2 AC2 7 FE D 801 HOH D 803 HOH D 804 CRYST1 264.490 71.190 139.440 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007172 0.00000