HEADER GENE REGULATION/ANTITUMOR PROTEIN/DNA 27-AUG-02 1MJE TITLE STRUCTURE OF A BRCA2-DSS1-SSDNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(P*TP*TP*TP*TP*TP*T)-3'; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DELETED IN SPLIT HAND/SPLIT FOOT PROTEIN 1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: DSS1, SPLIT HAND/FOOT DELETED PROTEIN 1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: BREAST CANCER 2; COMPND 12 CHAIN: A; COMPND 13 FRAGMENT: SEQUENCE DATABASE RESIDUES 2378-2792, 2880-3113 (RESIDUES COMPND 14 2793-2879 REMOVED); COMPND 15 SYNONYM: BRCA2; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TUMOR SUPPRESSOR, BREAST CANCER SUSCEPTIBILITY, DNA-BINDING, GENE KEYWDS 2 REGULATION-ANTITUMOR PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,P.D.JEFFREY,J.MILLER,E.KINNUCAN,Y.SUN,N.H.THOMA,N.ZHENG, AUTHOR 2 P.L.CHEN,W.H.LEE,N.P.PAVLETICH REVDAT 4 14-FEB-24 1MJE 1 REMARK REVDAT 3 09-AUG-17 1MJE 1 SOURCE REMARK REVDAT 2 24-FEB-09 1MJE 1 VERSN REVDAT 1 27-SEP-02 1MJE 0 JRNL AUTH H.YANG,P.D.JEFFREY,J.MILLER,E.KINNUCAN,Y.SUN,N.H.THOMA, JRNL AUTH 2 N.ZHENG,P.L.CHEN,W.H.LEE,N.P.PAVLETICH JRNL TITL BRCA2 FUNCTION IN DNA BINDING AND RECOMBINATION FROM A JRNL TITL 2 BRCA2-DSS1-SSDNA STRUCTURE. JRNL REF SCIENCE V. 297 1837 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12228710 JRNL DOI 10.1126/SCIENCE.297.5588.1837 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 2.5% REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5077 REMARK 3 NUCLEIC ACID ATOMS : 121 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24950 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM CITRATE, NACL, REMARK 280 DTT, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 99.43300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.02350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 99.43300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.02350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 99.43300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.02350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 99.43300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.02350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 99.43300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.02350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 99.43300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.02350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 99.43300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.02350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 99.43300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 99.43300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.02350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 26 REMARK 465 TRP B 27 REMARK 465 ALA B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 ALA B 36 REMARK 465 ASP B 46 REMARK 465 ASN B 47 REMARK 465 VAL B 48 REMARK 465 GLU B 49 REMARK 465 GLY B 64 REMARK 465 TYR B 65 REMARK 465 LYS B 66 REMARK 465 MET B 67 REMARK 465 GLU B 68 REMARK 465 THR B 69 REMARK 465 SER B 70 REMARK 465 ASN A 2378 REMARK 465 GLN A 2379 REMARK 465 LYS A 2380 REMARK 465 SER A 2381 REMARK 465 THR A 2382 REMARK 465 ASP A 2383 REMARK 465 GLY A 2384 REMARK 465 ASP A 2385 REMARK 465 ARG A 2386 REMARK 465 GLU A 2387 REMARK 465 ASP A 2388 REMARK 465 GLY A 2389 REMARK 465 ASN A 2390 REMARK 465 ASP A 2391 REMARK 465 SER A 2392 REMARK 465 HIS A 2393 REMARK 465 VAL A 2394 REMARK 465 ARG A 2395 REMARK 465 GLN A 2396 REMARK 465 PHE A 2397 REMARK 465 ASN A 2398 REMARK 465 ILE A 2615 REMARK 465 SER A 2616 REMARK 465 PRO A 2617 REMARK 465 SER A 2618 REMARK 465 THR A 2619 REMARK 465 LYS A 2620 REMARK 465 VAL A 2621 REMARK 465 SER A 2622 REMARK 465 GLU A 2623 REMARK 465 THR A 2624 REMARK 465 SER A 2625 REMARK 465 GLY A 2626 REMARK 465 GLY A 2627 REMARK 465 LYS A 2628 REMARK 465 THR A 2629 REMARK 465 SER A 2630 REMARK 465 GLY A 2631 REMARK 465 GLU A 2632 REMARK 465 ASP A 2633 REMARK 465 ALA A 2634 REMARK 465 ASN A 2635 REMARK 465 LYS A 2636 REMARK 465 GLU A 2880 REMARK 465 GLY A 2881 REMARK 465 SER A 3111 REMARK 465 THR A 3112 REMARK 465 PRO A 3113 REMARK 465 ASN A 3114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 7 CG CD REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 HIS B 37 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 HIS B 63 CB CG ND1 CD2 CE1 NE2 REMARK 470 SER A2457 OG REMARK 470 PRO A2458 CG CD REMARK 470 LYS A2459 CG CD CE NZ REMARK 470 GLN A2460 CG CD OE1 NE2 REMARK 470 LEU A2461 CG CD1 CD2 REMARK 470 LYS A2468 CG CD CE NZ REMARK 470 GLU A2469 CG CD OE1 OE2 REMARK 470 VAL A2637 CG1 CG2 REMARK 470 TRP A3110 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A3110 CZ3 CH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DT C 506 C5' C4' O4' C3' O3' C2' C1' REMARK 480 DT C 506 N1 C2 O2 N3 C4 O4 C5 REMARK 480 DT C 506 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 3028 N GLU A 3030 1.97 REMARK 500 O ILE A 2509 N SER A 2511 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 501 P DT C 501 OP3 -0.073 REMARK 500 VAL A2790 CA VAL A2790 CB 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2453 C - N - CA ANGL. DEV. = 14.9 DEGREES REMARK 500 PRO A2453 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 VAL A2889 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 GLY A3005 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 PRO A3054 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 17 -23.83 177.16 REMARK 500 GLU B 21 -76.54 -31.47 REMARK 500 PRO B 23 -27.36 -17.81 REMARK 500 ALA B 24 79.56 -109.79 REMARK 500 VAL B 38 -29.65 -27.72 REMARK 500 ASP B 41 -94.20 -45.99 REMARK 500 TRP B 43 -129.79 -62.00 REMARK 500 ASP B 44 134.44 -33.91 REMARK 500 LEU B 56 -73.43 -57.71 REMARK 500 ASP A2400 -160.38 94.96 REMARK 500 SER A2403 -77.34 -58.64 REMARK 500 SER A2404 42.98 -72.37 REMARK 500 GLN A2406 1.30 -68.25 REMARK 500 SER A2407 47.32 -90.06 REMARK 500 ALA A2408 -20.43 167.56 REMARK 500 LYS A2417 -84.45 -52.13 REMARK 500 ASN A2418 -34.81 -31.18 REMARK 500 SER A2430 -77.79 -62.24 REMARK 500 LEU A2431 -76.10 -34.88 REMARK 500 TYR A2432 -47.37 -28.97 REMARK 500 SER A2437 179.61 -57.66 REMARK 500 ALA A2447 3.92 -55.13 REMARK 500 ASP A2450 40.89 32.27 REMARK 500 PRO A2453 119.47 -6.22 REMARK 500 ALA A2455 67.19 -112.36 REMARK 500 CYS A2456 86.72 -66.94 REMARK 500 PRO A2458 98.16 95.59 REMARK 500 LEU A2461 65.60 172.51 REMARK 500 ILE A2463 -81.59 -29.68 REMARK 500 TYR A2464 -38.91 -14.38 REMARK 500 VAL A2466 -109.86 1.40 REMARK 500 SER A2467 67.93 93.61 REMARK 500 LYS A2468 4.00 -58.46 REMARK 500 CYS A2470 -65.85 -124.86 REMARK 500 ILE A2471 -48.96 -21.67 REMARK 500 ASN A2472 40.06 -77.31 REMARK 500 SER A2475 -38.51 -20.35 REMARK 500 ASN A2477 59.85 -94.12 REMARK 500 TYR A2480 -106.15 -77.73 REMARK 500 PHE A2481 -93.23 70.37 REMARK 500 GLN A2482 115.67 63.47 REMARK 500 ILE A2485 -0.94 -46.88 REMARK 500 PHE A2489 -61.59 -147.39 REMARK 500 LYS A2491 4.83 -174.07 REMARK 500 GLU A2492 -109.66 -39.71 REMARK 500 ALA A2496 -115.04 -81.20 REMARK 500 ALA A2503 175.98 30.18 REMARK 500 ASP A2504 -16.00 53.43 REMARK 500 ILE A2509 66.26 -102.91 REMARK 500 PRO A2510 62.54 -20.12 REMARK 500 REMARK 500 THIS ENTRY HAS 164 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A3072 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IYJ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 2793-2879 OF THE BRCA2 CHAIN REMARK 999 WERE REMOVED PROTEOLYTICALLY. REMARK 999 RESIDUES 3087 AND 3089 ARE COVALENTLY REMARK 999 BOUND. 3088 WAS SKIPPED IN THE NUMBERING. DBREF 1MJE B 1 70 UNP P60896 DSS1_HUMAN 1 70 DBREF 1MJE A 2378 2792 GB 17973451 AAK57537 2378 2792 DBREF 1MJE A 2880 3114 GB 17973451 AAK57537 2880 3113 DBREF 1MJE C 501 506 PDB 1MJE 1MJE 501 506 SEQRES 1 C 6 DT DT DT DT DT DT SEQRES 1 B 70 MET SER GLU LYS LYS GLN PRO VAL ASP LEU GLY LEU LEU SEQRES 2 B 70 GLU GLU ASP ASP GLU PHE GLU GLU PHE PRO ALA GLU ASP SEQRES 3 B 70 TRP ALA GLY LEU ASP GLU ASP GLU ASP ALA HIS VAL TRP SEQRES 4 B 70 GLU ASP ASN TRP ASP ASP ASP ASN VAL GLU ASP ASP PHE SEQRES 5 B 70 SER ASN GLN LEU ARG ALA GLU LEU GLU LYS HIS GLY TYR SEQRES 6 B 70 LYS MET GLU THR SER SEQRES 1 A 649 ASN GLN LYS SER THR ASP GLY ASP ARG GLU ASP GLY ASN SEQRES 2 A 649 ASP SER HIS VAL ARG GLN PHE ASN LYS ASP LEU MET SER SEQRES 3 A 649 SER LEU GLN SER ALA ARG ASP LEU GLN ASP MET ARG ILE SEQRES 4 A 649 LYS ASN LYS GLU ARG ARG HIS LEU ARG LEU GLN PRO GLY SEQRES 5 A 649 SER LEU TYR LEU THR LYS SER SER THR LEU PRO ARG ILE SEQRES 6 A 649 SER LEU GLN ALA ALA VAL GLY ASP ARG ALA PRO SER ALA SEQRES 7 A 649 CYS SER PRO LYS GLN LEU TYR ILE TYR GLY VAL SER LYS SEQRES 8 A 649 GLU CYS ILE ASN VAL ASN SER LYS ASN ALA GLU TYR PHE SEQRES 9 A 649 GLN PHE ASP ILE GLN ASP HIS PHE GLY LYS GLU ASP LEU SEQRES 10 A 649 CYS ALA GLY LYS GLY PHE GLN LEU ALA ASP GLY GLY TRP SEQRES 11 A 649 LEU ILE PRO SER ASN ASP GLY LYS ALA GLY LYS GLU GLU SEQRES 12 A 649 PHE TYR ARG ALA LEU CYS ASP THR PRO GLY VAL ASP PRO SEQRES 13 A 649 LYS LEU ILE SER SER ILE TRP VAL ALA ASN HIS TYR ARG SEQRES 14 A 649 TRP ILE VAL TRP LYS LEU ALA ALA MET GLU PHE ALA PHE SEQRES 15 A 649 PRO LYS GLU PHE ALA ASN ARG CYS LEU ASN PRO GLU ARG SEQRES 16 A 649 VAL LEU LEU GLN LEU LYS TYR ARG TYR ASP VAL GLU ILE SEQRES 17 A 649 ASP ASN SER ARG ARG SER ALA LEU LYS LYS ILE LEU GLU SEQRES 18 A 649 ARG ASP ASP THR ALA ALA LYS THR LEU VAL LEU CYS ILE SEQRES 19 A 649 SER ASP ILE ILE SER PRO SER THR LYS VAL SER GLU THR SEQRES 20 A 649 SER GLY GLY LYS THR SER GLY GLU ASP ALA ASN LYS VAL SEQRES 21 A 649 ASP THR ILE GLU LEU THR ASP GLY TRP TYR ALA VAL ARG SEQRES 22 A 649 ALA GLN LEU ASP PRO PRO LEU MET ALA LEU VAL LYS SER SEQRES 23 A 649 GLY LYS LEU THR VAL GLY GLN LYS ILE ILE THR GLN GLY SEQRES 24 A 649 ALA GLU LEU VAL GLY SER PRO ASP ALA CYS ALA PRO LEU SEQRES 25 A 649 GLU ALA PRO ASP SER LEU ARG LEU LYS ILE SER ALA ASN SEQRES 26 A 649 SER THR ARG PRO ALA ARG TRP HIS SER ARG LEU GLY PHE SEQRES 27 A 649 PHE ARG ASP PRO ARG PRO PHE PRO LEU PRO LEU SER SER SEQRES 28 A 649 LEU PHE SER ASP GLY GLY ASN VAL GLY CYS VAL ASP ILE SEQRES 29 A 649 ILE VAL GLN ARG VAL TYR PRO LEU GLN TRP VAL GLU LYS SEQRES 30 A 649 THR VAL SER GLY LEU TYR ILE PHE ARG SER GLU ARG GLU SEQRES 31 A 649 GLU GLU LYS GLU ALA LEU ARG PHE ALA GLU ALA GLN GLN SEQRES 32 A 649 LYS LYS LEU GLU ALA LEU PHE THR LYS VAL HIS THR GLU SEQRES 33 A 649 GLY LEU SER ARG ASP VAL THR THR VAL TRP LYS LEU ARG SEQRES 34 A 649 VAL THR SER TYR LYS LYS LYS GLU LYS SER ALA LEU LEU SEQRES 35 A 649 SER ILE TRP ARG PRO SER SER ASP LEU SER SER LEU LEU SEQRES 36 A 649 THR GLU GLY LYS ARG TYR ARG ILE TYR HIS LEU ALA VAL SEQRES 37 A 649 SER LYS SER LYS SER LYS PHE GLU ARG PRO SER ILE GLN SEQRES 38 A 649 LEU THR ALA THR LYS ARG THR GLN TYR GLN GLN LEU PRO SEQRES 39 A 649 VAL SER SER GLU THR LEU LEU GLN VAL TYR GLN PRO ARG SEQRES 40 A 649 GLU SER LEU HIS PHE SER ARG LEU SER ASP PRO ALA PHE SEQRES 41 A 649 GLN PRO PRO CYS SER GLU VAL ASP VAL VAL GLY VAL VAL SEQRES 42 A 649 VAL SER VAL VAL LYS PRO ILE GLY LEU ALA PRO LEU VAL SEQRES 43 A 649 TYR LEU SER ASP GLU CYS LEU ASN LEU LEU VAL VAL LYS SEQRES 44 A 649 PHE GLY ILE ASP LEU ASN GLU ASP ILE LYS PRO ARG VAL SEQRES 45 A 649 LEU ILE ALA ALA SER ASN LEU GLN CYS GLN PRO GLU SER SEQRES 46 A 649 THR SER GLY VAL PRO THR LEU PHE ALA CYS HIS PHE SER SEQRES 47 A 649 ILE PHE SER ALA SER PRO LYS GLU ALA TYR PHE GLN GLU SEQRES 48 A 649 LYS VAL ASN ASN LEU LYS HIS ALA ILE GLU ASN ILE ASP SEQRES 49 A 649 THR PHE TYR LYS GLU ALA GLU LYS LYS LEU ILE HIS VAL SEQRES 50 A 649 LEU GLU GLY ASP SER PRO LYS TRP SER THR PRO ASN HELIX 1 1 GLN B 55 LEU B 60 1 6 HELIX 2 2 MET A 2402 SER A 2404 5 3 HELIX 3 3 LEU A 2405 ARG A 2421 1 17 HELIX 4 4 GLY A 2429 SER A 2437 1 9 HELIX 5 5 GLN A 2445 GLY A 2449 5 5 HELIX 6 6 GLY A 2517 ASP A 2527 1 11 HELIX 7 7 ILE A 2539 PHE A 2557 1 19 HELIX 8 8 ASN A 2569 ILE A 2585 1 17 HELIX 9 9 SER A 2591 LEU A 2597 1 7 HELIX 10 10 ASP A 2654 GLY A 2664 1 11 HELIX 11 11 SER A 2700 ASN A 2702 5 3 HELIX 12 12 SER A 2764 GLU A 2768 5 5 HELIX 13 13 GLU A 2769 HIS A 2791 1 23 HELIX 14 14 ASP A 2914 LEU A 2918 5 5 HELIX 15 15 SER A 2960 TYR A 2968 1 9 HELIX 16 16 PHE A 2976 ASP A 2981 5 6 HELIX 17 17 GLU A 3070 ILE A 3087 1 18 HELIX 18 18 LYS A 3093 GLY A 3105 1 13 SHEET 1 A 2 LEU B 13 GLU B 14 0 SHEET 2 A 2 ILE A2442 SER A2443 1 O ILE A2442 N GLU B 14 SHEET 1 B 7 GLU A2678 VAL A2680 0 SHEET 2 B 7 ARG A2696 ILE A2699 -1 N ARG A2696 O VAL A2680 SHEET 3 B 7 ALA A2648 LEU A2653 1 O ARG A2650 N LEU A2697 SHEET 4 B 7 ILE A2640 THR A2643 -1 O ILE A2640 N ALA A2651 SHEET 5 B 7 LEU A2607 ASP A2613 -1 O CYS A2610 N THR A2643 SHEET 6 B 7 LYS A2671 THR A2674 -1 O ILE A2672 N LEU A2609 SHEET 7 B 7 THR A2704 PRO A2706 -1 N ARG A2705 O ILE A2673 SHEET 1 C 8 TYR A2760 ARG A2763 0 SHEET 2 C 8 TRP A2751 LYS A2754 -1 N TRP A2751 O ARG A2763 SHEET 3 C 8 VAL A2886 SER A2896 -1 O THR A2887 N VAL A2752 SHEET 4 C 8 VAL A2736 VAL A2746 -1 N ILE A2742 O THR A2895 SHEET 5 C 8 ARG A2924 LYS A2934 -1 O TYR A2925 N ILE A2741 SHEET 6 C 8 ILE A2944 LEU A2957 -1 N GLN A2945 O SER A2933 SHEET 7 C 8 ALA A2904 TRP A2909 1 O LEU A2905 N LEU A2946 SHEET 8 C 8 VAL A2886 SER A2896 -1 O TRP A2890 N ILE A2908 SHEET 1 D 6 VAL A2991 SER A2999 0 SHEET 2 D 6 TYR A3011 SER A3013 -1 O TYR A3011 N VAL A2998 SHEET 3 D 6 LEU A3019 PHE A3024 -1 O LEU A3020 N LEU A3012 SHEET 4 D 6 THR A3055 ALA A3058 1 O LEU A3056 N LYS A3023 SHEET 5 D 6 LEU A3037 GLN A3046 -1 N GLN A3044 O PHE A3057 SHEET 6 D 6 VAL A2991 SER A2999 -1 O VAL A2991 N LEU A3043 CRYST1 198.866 198.866 200.047 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004999 0.00000