HEADER IMMUNE SYSTEM 28-AUG-02 1MJU TITLE 1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF TITLE 2 ESTEROLYTIC ANTIBODY MS6-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN MS6-12; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB FRAGMENT, LIGHT CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMMUNOGLOBULIN MS6-12; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB FRAGMENT, HEAVY CHAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: HYBRIDOMA; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 OTHER_DETAILS: FUSING OF MOUSE SPLENOCYTES WITH MYELOMA CELL; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 CELL_LINE: HYBRIDOMA; SOURCE 15 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 18 OTHER_DETAILS: FUSING OF MOUSE SPLENOCYTES WITH MYELOMA CELL KEYWDS CATALYTIC ANTIBODY, ESTER HYDROLYSIS, ESTEROLYTIC, FAB, KEYWDS 2 IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.N.RUZHEINIKOV,T.A.MURANOVA,S.E.SEDELNIKOVA,L.J.PARTRIDGE, AUTHOR 2 G.M.BLACKBURN,I.A.MURRAY,H.KAKINUMA,N.TAKASHI,K.SHIMAZAKI,J.SUN, AUTHOR 3 Y.NISHI,D.W.RICE REVDAT 5 25-DEC-19 1MJU 1 SEQRES REVDAT 4 24-JUL-19 1MJU 1 REMARK LINK REVDAT 3 13-JUL-11 1MJU 1 VERSN REVDAT 2 24-FEB-09 1MJU 1 VERSN REVDAT 1 23-SEP-03 1MJU 0 JRNL AUTH S.N.RUZHEINIKOV,T.A.MURANOVA,S.E.SEDELNIKOVA,L.J.PARTRIDGE, JRNL AUTH 2 G.M.BLACKBURN,I.A.MURRAY,H.KAKINUMA,N.TAKASHI,K.SHIMAZAKI, JRNL AUTH 3 J.SUN,Y.NISHI,D.W.RICE JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE FAB-FRAGMENTS OF A JRNL TITL 2 FAMILY OF MOUSE CATALYTIC ANTIBODIES WITH ESTERASE ACTIVITY JRNL REF J.MOL.BIOL. V. 332 423 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12948492 JRNL DOI 10.1016/S0022-2836(03)00902-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.A.MURANOVA,S.N.RUZHEINIKOV,S.E.SEDELNIKOVA,A.MOIR, REMARK 1 AUTH 2 L.J.PARTRIDGE,H.KAKINUMA,N.TAKASHI,K.SHIMAZAKI,J.SUN, REMARK 1 AUTH 3 Y.NISHI,D.W.RICE REMARK 1 TITL THE PREPARATION AND CRYSTALLIZATION OF FAB FRAGMENTS OF A REMARK 1 TITL 2 FAMILY OF MOUSE ESTEROLYTIC CATALYTIC ANTIBODIES AND THEIR REMARK 1 TITL 3 COMPLEXES WITH A TRANSITION-STATE ANALOGUE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 1192 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444901010149 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 141368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 352 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 935 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3479 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3026 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4716 ; 1.749 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7133 ; 3.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ;17.245 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 612 ;17.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3734 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 550 ; 0.381 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2520 ; 0.201 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 9 ; 0.209 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 586 ; 0.309 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 6 ; 0.286 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.367 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.288 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 59 ; 0.351 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2144 ; 3.812 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3500 ; 5.374 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 8.663 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ;10.982 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3479 ; 2.365 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 935 ;24.095 ;10.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3401 ;11.152 ;10.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1MJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.870 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1MH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, NACL, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.28150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.67450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.28150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.67450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 131 REMARK 465 ASP H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 SER H 136 REMARK 465 THR H 231 REMARK 465 ILE H 232 REMARK 465 LYS H 233 REMARK 465 PRO H 234 REMARK 465 CYS H 235 REMARK 465 PRO H 236 REMARK 465 PRO H 237 REMARK 465 CYS H 238 REMARK 465 LYS H 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 1835 O HOH H 1868 1.52 REMARK 500 O HOH L 1601 O HOH L 1852 1.55 REMARK 500 O HOH L 1517 O HOH L 1710 1.56 REMARK 500 O HOH H 1483 O HOH H 1862 1.58 REMARK 500 C CYS H 128 O HOH H 1853 1.58 REMARK 500 OE1 GLN H 105 O HOH H 1863 1.59 REMARK 500 O HOH H 1508 O HOH H 1865 1.62 REMARK 500 NE2 GLN H 203 O HOH H 1835 1.62 REMARK 500 O HOH L 1482 O HOH L 1864 1.65 REMARK 500 O HOH L 1542 O HOH L 1817 1.66 REMARK 500 O HOH L 1624 O HOH H 1740 1.73 REMARK 500 O HOH L 1590 O HOH L 1647 1.74 REMARK 500 O HOH L 1580 O HOH L 1695 1.76 REMARK 500 O HOH L 1847 O HOH L 1848 1.77 REMARK 500 O HOH L 1649 O HOH L 1699 1.83 REMARK 500 O HOH L 1529 O HOH L 1627 1.85 REMARK 500 O HOH L 1519 O HOH L 1875 1.86 REMARK 500 O HOH L 1639 O HOH L 1788 1.86 REMARK 500 NH2 ARG L 24 O HOH L 1819 1.87 REMARK 500 O HOH L 1578 O HOH H 1870 1.88 REMARK 500 O HOH H 1487 O HOH H 1851 1.91 REMARK 500 O HOH H 1662 O HOH H 1801 1.92 REMARK 500 O HOH H 1482 O HOH H 1865 1.92 REMARK 500 O HOH L 1509 O HOH L 1862 1.93 REMARK 500 O GLN H 179 O HOH H 1684 1.96 REMARK 500 O HOH L 1636 O HOH L 1668 1.96 REMARK 500 O HOH H 1764 O HOH H 1854 1.97 REMARK 500 CG2 THR H 198 O HOH H 1867 1.98 REMARK 500 O HOH H 1519 O HOH H 1782 2.01 REMARK 500 O HOH L 1525 O HOH L 1850 2.01 REMARK 500 O HOH L 1854 O HOH H 1596 2.01 REMARK 500 N ALA L 7 O HOH L 1862 2.02 REMARK 500 O HOH L 1688 O HOH L 1855 2.04 REMARK 500 OE2 GLU L 154 O HOH L 1621 2.04 REMARK 500 O HOH L 1534 O HOH L 1647 2.04 REMARK 500 NH2 ARG L 77 O HOH L 1776 2.07 REMARK 500 O HOH L 1724 O HOH L 1874 2.07 REMARK 500 OE2 GLU L 79 O HOH L 1622 2.07 REMARK 500 O HOH H 1731 O HOH H 1800 2.08 REMARK 500 O HOH L 1481 O HOH L 1795 2.08 REMARK 500 O HOH H 1657 O HOH H 1857 2.09 REMARK 500 O2 GOL H 1402 O HOH H 1636 2.09 REMARK 500 O HOH L 1702 O HOH H 1673 2.09 REMARK 500 OE1 GLU H 46 O HOH H 1622 2.11 REMARK 500 N SER H 137 O HOH H 1864 2.12 REMARK 500 O HOH H 1713 O HOH H 1767 2.13 REMARK 500 O HOH H 1776 O HOH H 1810 2.16 REMARK 500 NZ LYS L 183 OE2 GLU L 187 2.17 REMARK 500 O HOH H 1565 O HOH H 1733 2.19 REMARK 500 O HOH L 1827 O HOH L 1838 2.19 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 1870 O HOH H 1592 2554 1.67 REMARK 500 O HOH L 1605 O HOH H 1861 2555 1.88 REMARK 500 O HOH L 1828 O HOH H 1856 2554 1.95 REMARK 500 O HOH L 1871 O HOH H 1848 3645 2.03 REMARK 500 O HOH L 1578 O HOH H 1861 2555 2.04 REMARK 500 O HOH L 1828 O HOH H 1870 2554 2.06 REMARK 500 O HOH L 1576 O HOH H 1637 3645 2.09 REMARK 500 CG2 THR L 202 O HOH H 1862 3645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL L 146 CG1 - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 VAL L 146 CG1 - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 MET L 175 CG - SD - CE ANGL. DEV. = -17.3 DEGREES REMARK 500 VAL L 206 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG H 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 VAL H 177 CG1 - CB - CG2 ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL H 177 CG1 - CB - CG2 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET L 51 -38.81 74.07 REMARK 500 SER L 67 -144.99 -94.02 REMARK 500 GLU L 213 56.06 -90.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN L 145 VAL L 146 149.94 REMARK 500 PRO H 149 GLU H 150 144.16 REMARK 500 PRO H 151 VAL H 152 134.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MH5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF THEESTEROLYTIC REMARK 900 ANTIBODY MS6-164 AND A TRANSITION-STATE ANALOG REMARK 900 RELATED ID: 1MIE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS5- REMARK 900 393 REMARK 900 RELATED ID: 1MJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF ESTEROLYTIC REMARK 900 ANTIBODY MS5-393D9 AND A TRANSITION-STATE ANALOG REMARK 900 RELATED ID: 1MJ8 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB REMARK 900 FRAGMENT OF THE ESTEROLYTIC ANTIBODY MS6-126 AND A TRANSITION-STATE REMARK 900 ANALOG REMARK 900 RELATED ID: 1MJJ RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB REMARK 900 FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12 AND A TRANSITION-STATE REMARK 900 ANALOG REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE WAS REMARK 999 NOT AVAILABLE AT THE TIME OF PROCESSING. DBREF 1MJU L 1 214 PDB 1MJU 1MJU 1 214 DBREF 1MJU H 1 239 PDB 1MJU 1MJU 1 239 SEQRES 1 L 219 ASP ILE VAL MET THR GLN ALA ALA PRO SER VAL PRO VAL SEQRES 2 L 219 THR PRO GLY GLU SER VAL SER ILE SER CYS ARG SER SER SEQRES 3 L 219 LYS SER LEU LEU HIS SER ASN GLY ASN THR TYR LEU TYR SEQRES 4 L 219 TRP PHE LEU GLN ARG PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 219 ILE TYR ARG MET SER ASN LEU ALA SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ALA PHE THR LEU SEQRES 7 L 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS LEU GLN HIS LEU GLU TYR PRO PHE THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 227 PCA VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 227 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 227 TYR THR PHE THR ASN TYR TRP ILE ASN TRP VAL LYS GLN SEQRES 4 H 227 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASN ILE TYR SEQRES 5 H 227 PRO GLY SER SER TYR THR HIS TYR ASN GLU LYS PHE LYS SEQRES 6 H 227 ASN LYS ALA THR LEU THR VAL ASP THR SER SER SER THR SEQRES 7 H 227 ALA TYR MET GLN LEU SER SER LEU THR SER ASP ASP SER SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ASN LYS LEU GLY TRP PHE PRO SEQRES 9 H 227 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 H 227 LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL SEQRES 11 H 227 CYS GLY ASP THR SER GLY SER SER VAL THR LEU GLY CYS SEQRES 12 H 227 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 H 227 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 227 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 H 227 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SER SEQRES 16 H 227 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 227 VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO THR ILE LYS SEQRES 18 H 227 PRO CYS PRO PRO CYS LYS MODRES 1MJU PCA H 1 GLN PYROGLUTAMIC ACID HET PCA H 1 8 HET GOL L1401 6 HET GOL L1403 6 HET GOL L1404 6 HET GOL L1405 6 HET GOL H1402 6 HET GOL H1406 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PCA C5 H7 N O3 FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *935(H2 O) HELIX 1 1 GLU L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 THR L 126 1 6 HELIX 3 3 LYS L 183 ARG L 188 1 6 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 GLU H 61 LYS H 64 5 4 HELIX 6 6 THR H 83 SER H 87 5 5 HELIX 7 7 SER H 163 SER H 165 5 3 HELIX 8 8 PRO H 213 SER H 216 5 4 SHEET 1 A 4 MET L 4 THR L 5 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ALA L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 GLY L 66 -1 N SER L 63 O ARG L 74 SHEET 1 B 5 ASN L 53 LEU L 54 0 SHEET 2 B 5 GLN L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 N LEU L 37 O GLN L 45 SHEET 4 B 5 GLY L 84 GLN L 90 -1 O VAL L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 ASN L 53 LEU L 54 0 SHEET 2 C 6 GLN L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 N LEU L 37 O GLN L 45 SHEET 4 C 6 GLY L 84 GLN L 90 -1 O VAL L 85 N GLN L 38 SHEET 5 C 6 THR L 102 LEU L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 SER L 10 VAL L 13 1 N VAL L 11 O GLU L 105 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 D 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 E 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 E 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 F 4 GLN H 3 GLN H 5 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 F 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 F 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 G 5 THR H 57 TYR H 59 0 SHEET 2 G 5 LEU H 45 ILE H 51 -1 N ASN H 50 O HIS H 58 SHEET 3 G 5 ILE H 34 GLN H 39 -1 N TRP H 36 O ILE H 48 SHEET 4 G 5 ALA H 88 LEU H 96 -1 O ALA H 93 N ASN H 35 SHEET 5 G 5 PHE H 99 TRP H 103 -1 O PHE H 99 N LEU H 96 SHEET 1 H 6 THR H 57 TYR H 59 0 SHEET 2 H 6 LEU H 45 ILE H 51 -1 N ASN H 50 O HIS H 58 SHEET 3 H 6 ILE H 34 GLN H 39 -1 N TRP H 36 O ILE H 48 SHEET 4 H 6 ALA H 88 LEU H 96 -1 O ALA H 93 N ASN H 35 SHEET 5 H 6 THR H 107 VAL H 111 -1 O VAL H 109 N ALA H 88 SHEET 6 H 6 ALA H 9 VAL H 12 1 N VAL H 12 O THR H 110 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 VAL H 138 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 I 4 LEU H 184 VAL H 193 -1 O TYR H 185 N TYR H 147 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 VAL H 138 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 J 4 LEU H 184 VAL H 193 -1 O TYR H 185 N TYR H 147 SHEET 4 J 4 VAL H 177 GLN H 179 -1 N GLN H 179 O LEU H 184 SHEET 1 K 3 THR H 153 TRP H 158 0 SHEET 2 K 3 THR H 206 HIS H 212 -1 O ASN H 209 N THR H 157 SHEET 3 K 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.13 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 3 CYS L 214 CYS H 128 1555 1555 2.08 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 5 CYS H 142 CYS H 208 1555 1555 2.02 LINK C PCA H 1 N VAL H 2 1555 1555 1.32 CISPEP 1 TYR L 94 PRO L 95 0 -4.34 CISPEP 2 TYR L 140 PRO L 141 0 3.07 CISPEP 3 PHE H 148 PRO H 149 0 -8.52 CISPEP 4 GLU H 150 PRO H 151 0 -4.98 CISPEP 5 TRP H 199 PRO H 200 0 6.00 SITE 1 AC1 5 GLY L 29 ASN L 30 THR L 31 ARG L 50 SITE 2 AC1 5 HOH L1670 SITE 1 AC2 9 LYS H 95 GLY H 97 TRP H 98 HOH H1589 SITE 2 AC2 9 HOH H1636 HOH H1856 TYR L 32 HIS L 91 SITE 3 AC2 9 HOH L1558 SITE 1 AC3 8 ALA L 55 GLY L 57 VAL L 58 ASP L 60 SITE 2 AC3 8 THR L 197 HOH L1496 HOH L1844 HOH L1846 SITE 1 AC4 6 ARG L 39 GLN L 45 VAL L 58 PRO L 59 SITE 2 AC4 6 GLU L 81 ASP L 82 SITE 1 AC5 6 HIS H 172 THR L 164 ASP L 167 SER L 168 SITE 2 AC5 6 HOH L1413 HOH L1450 SITE 1 AC6 7 SER H 202 SER H 204 LYS H 222 HOH H1426 SITE 2 AC6 7 HOH H1750 ARG L 74 HOH L1643 CRYST1 56.046 65.349 138.563 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007217 0.00000