HEADER PROTEIN BINDING 29-AUG-02 1MKE TITLE STRUCTURE OF THE N-WASP EVH1 DOMAIN-WIP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN CONSISTING OF WISKOTT-ALDRICH SYNDROME COMPND 3 PROTEIN INTERACTING PROTEIN (WIP), GSGSG LINKER, AND NEURAL WISKOTT- COMPND 4 ALDRICH SYNDROME PROTEIN (N-WASP); COMPND 5 CHAIN: A; COMPND 6 FRAGMENT: WIP PEPTIDE AND N-WASP EVH1 DOMAIN; COMPND 7 SYNONYM: WIP - N-WASP; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: FUSION PROTEIN COMPRISES RESIDUES 461-485 OF WIP, A COMPND 10 GSGSG LINKER SEQUENCE, AND RESIDUES 26-147 (EVH1 DOMAIN) OF N-WASP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 10116,9606; SOURCE 5 STRAIN: ,; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBH4 KEYWDS POLYPROLINE, PROTEIN-PROTEIN COMPLEX, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR B.F.VOLKMAN,K.E.PREHODA,J.A.SCOTT,F.C.PETERSON,W.A.LIM REVDAT 3 23-FEB-22 1MKE 1 REMARK SEQADV REVDAT 2 24-FEB-09 1MKE 1 VERSN REVDAT 1 04-DEC-02 1MKE 0 JRNL AUTH B.F.VOLKMAN,K.E.PREHODA,J.A.SCOTT,F.C.PETERSON,W.A.LIM JRNL TITL STRUCTURE OF THE N-WASP EVH1 DOMAIN-WIP COMPLEX. INSIGHT JRNL TITL 2 INTO THE MOLECULAR BASIS OF WISKOTT-ALDRICH SYNDROME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 111 565 2002 JRNL REFN ISSN 0092-8674 JRNL PMID 12437929 JRNL DOI 10.1016/S0092-8674(02)01076-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT, P. (DYANA), GUENTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES WERE DERIVED FROM A REMARK 3 TOTAL OF 1884 NON-TRIVIAL NOE DISTANCE CONSTRAINTS, INCLUDING REMARK 3 135 RESTRAINTS BETWEEN RESIDUES OF THE WIP PEPTIDE AND THE EVH1 REMARK 3 DOMAIN. 143 PHI AND PSI TORSION ANGLE CONSTRAINTS WERE GENERATED REMARK 3 FROM CHEMICAL SHIFT DATABASE SEARCHING USING THE PROGRAM TALOS REMARK 4 REMARK 4 1MKE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000016979. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : U-15N PROTEIN 20 MM PO4 BUFFER 1 REMARK 210 MM DITHIOTHREITOL; U-13C/15N REMARK 210 PROTEIN 20 MM PO4 BUFFER 1 MM REMARK 210 DITHIOTHREITOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0, XEASY 1.3, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REPRESENTATIVE CONFORMER (MODEL 1) IS MINIMIZED REMARK 210 AVERAGE STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 ARG A 145 REMARK 465 LYS A 146 REMARK 465 SER A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 ASP A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 72 O SER A 77 1.46 REMARK 500 O VAL A 41 H LYS A 71 1.52 REMARK 500 H ALA A 46 O ALA A 67 1.55 REMARK 500 O THR A 137 H GLY A 141 1.56 REMARK 500 H GLN A 49 O ASN A 122 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 11 -91.69 -148.59 REMARK 500 1 GLU A 23 141.33 65.54 REMARK 500 1 SER A 24 176.38 -49.06 REMARK 500 1 ARG A 25 74.86 67.11 REMARK 500 1 SER A 27 103.03 -167.16 REMARK 500 1 SER A 29 175.58 159.81 REMARK 500 1 PHE A 33 -82.37 -40.32 REMARK 500 1 SER A 34 -161.40 170.14 REMARK 500 1 PHE A 35 -62.14 -157.97 REMARK 500 1 LYS A 39 89.51 -150.28 REMARK 500 1 MET A 43 -71.07 -109.41 REMARK 500 1 ALA A 53 83.27 -61.81 REMARK 500 1 ARG A 55 177.32 -52.30 REMARK 500 1 CYS A 57 82.40 49.17 REMARK 500 1 MET A 58 104.69 -160.73 REMARK 500 1 CYS A 63 128.39 -179.36 REMARK 500 1 ASN A 98 157.51 -40.19 REMARK 500 1 SER A 104 69.00 -156.77 REMARK 500 1 TYR A 108 42.76 -143.03 REMARK 500 1 ARG A 143 -161.00 41.01 REMARK 500 2 THR A 11 -52.59 -144.77 REMARK 500 2 THR A 12 -64.02 -173.81 REMARK 500 2 LYS A 13 149.20 61.67 REMARK 500 2 LYS A 18 56.87 -153.12 REMARK 500 2 ARG A 21 91.66 -163.40 REMARK 500 2 ASN A 22 -61.63 -108.62 REMARK 500 2 GLU A 23 68.45 -156.29 REMARK 500 2 SER A 29 84.86 -168.99 REMARK 500 2 SER A 31 -57.77 -130.40 REMARK 500 2 LEU A 32 -62.59 -154.08 REMARK 500 2 LEU A 36 55.41 -162.11 REMARK 500 2 LYS A 38 173.39 73.36 REMARK 500 2 LYS A 39 70.68 76.44 REMARK 500 2 SER A 44 145.36 -171.20 REMARK 500 2 ASP A 54 166.21 -44.12 REMARK 500 2 CYS A 63 99.21 171.92 REMARK 500 2 ARG A 76 54.14 35.33 REMARK 500 2 GLU A 95 74.94 -102.96 REMARK 500 2 LEU A 96 146.56 -34.35 REMARK 500 2 ASN A 99 61.56 60.64 REMARK 500 2 SER A 104 64.91 -174.64 REMARK 500 2 ASP A 115 -88.67 57.20 REMARK 500 2 ARG A 143 43.04 38.95 REMARK 500 3 GLN A 10 125.40 -39.53 REMARK 500 3 LYS A 18 57.11 -148.93 REMARK 500 3 ASN A 22 75.20 176.03 REMARK 500 3 GLU A 23 -61.32 -170.71 REMARK 500 3 ARG A 25 -57.54 -129.76 REMARK 500 3 SER A 27 119.48 175.94 REMARK 500 3 SER A 31 112.10 58.73 REMARK 500 REMARK 500 THIS ENTRY HAS 440 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1MKE A 1 25 UNP O43516 WAIP_HUMAN 461 485 DBREF 1MKE A 31 152 UNP O08816 WASL_RAT 26 147 SEQADV 1MKE GLY A 26 UNP O43516 LINKER SEQADV 1MKE SER A 27 UNP O43516 LINKER SEQADV 1MKE GLY A 28 UNP O43516 LINKER SEQADV 1MKE SER A 29 UNP O43516 LINKER SEQADV 1MKE GLY A 30 UNP O43516 LINKER SEQRES 1 A 152 ASP LEU PRO PRO PRO GLU PRO TYR VAL GLN THR THR LYS SEQRES 2 A 152 SER TYR PRO SER LYS LEU ALA ARG ASN GLU SER ARG GLY SEQRES 3 A 152 SER GLY SER GLY SER LEU PHE SER PHE LEU GLY LYS LYS SEQRES 4 A 152 CYS VAL THR MET SER SER ALA VAL VAL GLN LEU TYR ALA SEQRES 5 A 152 ALA ASP ARG ASN CYS MET TRP SER LYS LYS CYS SER GLY SEQRES 6 A 152 VAL ALA CYS LEU VAL LYS ASP ASN PRO GLN ARG SER TYR SEQRES 7 A 152 PHE LEU ARG ILE PHE ASP ILE LYS ASP GLY LYS LEU LEU SEQRES 8 A 152 TRP GLU GLN GLU LEU TYR ASN ASN PHE VAL TYR ASN SER SEQRES 9 A 152 PRO ARG GLY TYR PHE HIS THR PHE ALA GLY ASP THR CYS SEQRES 10 A 152 GLN VAL ALA LEU ASN PHE ALA ASN GLU GLU GLU ALA LYS SEQRES 11 A 152 LYS PHE ARG LYS ALA VAL THR ASP LEU LEU GLY ARG ARG SEQRES 12 A 152 GLN ARG LYS SER GLU LYS ARG ARG ASP HELIX 1 1 ASN A 125 ARG A 143 1 19 SHEET 1 A 6 LEU A 90 GLU A 95 0 SHEET 2 A 6 SER A 77 PHE A 83 -1 N LEU A 80 O GLN A 94 SHEET 3 A 6 MET A 58 ASP A 72 -1 N ASP A 72 O SER A 77 SHEET 4 A 6 VAL A 41 ASP A 54 -1 N VAL A 41 O LYS A 71 SHEET 5 A 6 GLN A 118 PHE A 123 -1 O ASN A 122 N GLN A 49 SHEET 6 A 6 PHE A 109 ALA A 113 -1 N HIS A 110 O LEU A 121 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1