data_1MLX # _entry.id 1MLX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MLX pdb_00001mlx 10.2210/pdb1mlx/pdb NDB AD0028 ? ? RCSB RCSB017004 ? ? WWPDB D_1000017004 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-04 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_dist_value' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MLX _pdbx_database_status.recvd_initial_deposition_date 2002-08-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prakash, T.P.' 1 'Manoharan, M.' 2 'Kawasaki, A.M.' 3 'Fraser, A.S.' 4 'Lesnik, E.A.' 5 'Sioufi, N.' 6 'Leeds, J.M.' 7 'Teplova, M.' 8 'Egli, M.' 9 # _citation.id primary _citation.title ;2'-O-[2-(Methylthio)ethyl]-Modified Oligonucleotide: An Analogue of 2'-O-[2-(Methoxy)-ethyl]-Modified Oligonucleotide with Improved Protein Binding Properties and High Binding Affinity to Target RNA ; _citation.journal_abbrev Biochemistry _citation.journal_volume 41 _citation.page_first 11642 _citation.page_last 11648 _citation.year 2002 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12269806 _citation.pdbx_database_id_DOI 10.1021/bi020264t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prakash, T.P.' 1 ? primary 'Manoharan, M.' 2 ? primary 'Kawasaki, A.M.' 3 ? primary 'Fraser, A.S.' 4 ? primary 'Lesnik, E.A.' 5 ? primary 'Sioufi, N.' 6 ? primary 'Leeds, J.M.' 7 ? primary 'Teplova, M.' 8 ? primary 'Egli, M.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*SMTP*AP*CP*GP*C)-3'" 3135.150 2 ? ? ? ;Self-complementary DNA Decamer with a 2'-O-[2-(Methylthio)ethyl]-Modified Thymine (SMT) at Position 6 ; 2 water nat water 18.015 146 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(SMT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 SMT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'solid phase oligonucleotide synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SMT 'RNA linking' n "2'-[(METHYLTHIO)ETHYLOXY]-THYMIDINE-5'-MONOPHOSPHATE" ? 'C13 H21 N2 O9 P S' 412.353 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DC 2 2 2 DC CYT A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DT 4 4 4 DT THY A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 SMT 6 6 6 SMT MSE A . n A 1 7 DA 7 7 7 DA ADE A . n A 1 8 DC 8 8 8 DC CYT A . n A 1 9 DG 9 9 9 DG GUA A . n A 1 10 DC 10 10 10 DC CYT A . n B 1 1 DG 1 111 111 DG GUA B . n B 1 2 DC 2 112 112 DC CYT B . n B 1 3 DG 3 113 113 DG GUA B . n B 1 4 DT 4 114 114 DT THY B . n B 1 5 DA 5 115 115 DA ADE B . n B 1 6 SMT 6 116 116 SMT MSE B . n B 1 7 DA 7 117 117 DA ADE B . n B 1 8 DC 8 118 118 DC CYT B . n B 1 9 DG 9 119 119 DG GUA B . n B 1 10 DC 10 120 120 DC CYT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 701 701 HOH TIP A . C 2 HOH 2 702 702 HOH TIP A . C 2 HOH 3 704 704 HOH TIP A . C 2 HOH 4 705 705 HOH TIP A . C 2 HOH 5 707 707 HOH TIP A . C 2 HOH 6 708 708 HOH TIP A . C 2 HOH 7 709 709 HOH TIP A . C 2 HOH 8 710 710 HOH TIP A . C 2 HOH 9 711 711 HOH TIP A . C 2 HOH 10 712 712 HOH TIP A . C 2 HOH 11 714 714 HOH TIP A . C 2 HOH 12 715 715 HOH TIP A . C 2 HOH 13 716 716 HOH TIP A . C 2 HOH 14 718 718 HOH TIP A . C 2 HOH 15 721 721 HOH TIP A . C 2 HOH 16 722 722 HOH TIP A . C 2 HOH 17 723 723 HOH TIP A . C 2 HOH 18 724 724 HOH TIP A . C 2 HOH 19 725 725 HOH TIP A . C 2 HOH 20 729 729 HOH TIP A . C 2 HOH 21 730 730 HOH TIP A . C 2 HOH 22 732 732 HOH TIP A . C 2 HOH 23 734 734 HOH TIP A . C 2 HOH 24 735 735 HOH TIP A . C 2 HOH 25 737 737 HOH TIP A . C 2 HOH 26 739 739 HOH TIP A . C 2 HOH 27 741 741 HOH TIP A . C 2 HOH 28 745 745 HOH TIP A . C 2 HOH 29 746 746 HOH TIP A . C 2 HOH 30 751 751 HOH TIP A . C 2 HOH 31 753 753 HOH TIP A . C 2 HOH 32 756 756 HOH TIP A . C 2 HOH 33 761 761 HOH TIP A . C 2 HOH 34 762 762 HOH TIP A . C 2 HOH 35 767 767 HOH TIP A . C 2 HOH 36 771 771 HOH TIP A . C 2 HOH 37 772 772 HOH TIP A . C 2 HOH 38 776 776 HOH TIP A . C 2 HOH 39 784 784 HOH TIP A . C 2 HOH 40 789 789 HOH TIP A . C 2 HOH 41 793 793 HOH TIP A . C 2 HOH 42 800 800 HOH TIP A . C 2 HOH 43 802 802 HOH TIP A . C 2 HOH 44 806 806 HOH TIP A . C 2 HOH 45 807 807 HOH TIP A . C 2 HOH 46 809 809 HOH TIP A . C 2 HOH 47 810 810 HOH TIP A . C 2 HOH 48 813 813 HOH TIP A . C 2 HOH 49 814 814 HOH TIP A . C 2 HOH 50 817 817 HOH TIP A . C 2 HOH 51 818 818 HOH TIP A . C 2 HOH 52 820 820 HOH TIP A . C 2 HOH 53 823 823 HOH TIP A . C 2 HOH 54 825 825 HOH TIP A . C 2 HOH 55 829 829 HOH TIP A . C 2 HOH 56 831 831 HOH TIP A . C 2 HOH 57 837 837 HOH TIP A . C 2 HOH 58 840 840 HOH TIP A . C 2 HOH 59 841 841 HOH TIP A . C 2 HOH 60 846 846 HOH TIP A . C 2 HOH 61 854 854 HOH TIP A . C 2 HOH 62 864 864 HOH TIP A . C 2 HOH 63 869 869 HOH TIP A . C 2 HOH 64 874 874 HOH TIP A . C 2 HOH 65 883 883 HOH TIP A . C 2 HOH 66 884 884 HOH TIP A . C 2 HOH 67 885 885 HOH TIP A . C 2 HOH 68 891 891 HOH TIP A . C 2 HOH 69 892 892 HOH TIP A . C 2 HOH 70 896 896 HOH TIP A . C 2 HOH 71 898 898 HOH TIP A . C 2 HOH 72 899 899 HOH TIP A . C 2 HOH 73 900 900 HOH TIP A . C 2 HOH 74 901 901 HOH TIP A . C 2 HOH 75 903 903 HOH TIP A . C 2 HOH 76 906 906 HOH TIP A . C 2 HOH 77 907 907 HOH TIP A . C 2 HOH 78 908 908 HOH TIP A . C 2 HOH 79 909 909 HOH TIP A . C 2 HOH 80 911 911 HOH TIP A . C 2 HOH 81 913 913 HOH TIP A . C 2 HOH 82 915 915 HOH TIP A . C 2 HOH 83 916 916 HOH TIP A . C 2 HOH 84 1001 1001 HOH TIP A . D 2 HOH 1 700 700 HOH TIP B . D 2 HOH 2 703 703 HOH TIP B . D 2 HOH 3 706 706 HOH TIP B . D 2 HOH 4 713 713 HOH TIP B . D 2 HOH 5 717 717 HOH TIP B . D 2 HOH 6 719 719 HOH TIP B . D 2 HOH 7 720 720 HOH TIP B . D 2 HOH 8 726 726 HOH TIP B . D 2 HOH 9 728 728 HOH TIP B . D 2 HOH 10 731 731 HOH TIP B . D 2 HOH 11 733 733 HOH TIP B . D 2 HOH 12 736 736 HOH TIP B . D 2 HOH 13 738 738 HOH TIP B . D 2 HOH 14 742 742 HOH TIP B . D 2 HOH 15 743 743 HOH TIP B . D 2 HOH 16 747 747 HOH TIP B . D 2 HOH 17 749 749 HOH TIP B . D 2 HOH 18 750 750 HOH TIP B . D 2 HOH 19 763 763 HOH TIP B . D 2 HOH 20 775 775 HOH TIP B . D 2 HOH 21 777 777 HOH TIP B . D 2 HOH 22 778 778 HOH TIP B . D 2 HOH 23 781 781 HOH TIP B . D 2 HOH 24 782 782 HOH TIP B . D 2 HOH 25 787 787 HOH TIP B . D 2 HOH 26 794 794 HOH TIP B . D 2 HOH 27 798 798 HOH TIP B . D 2 HOH 28 799 799 HOH TIP B . D 2 HOH 29 801 801 HOH TIP B . D 2 HOH 30 803 803 HOH TIP B . D 2 HOH 31 804 804 HOH TIP B . D 2 HOH 32 805 805 HOH TIP B . D 2 HOH 33 811 811 HOH TIP B . D 2 HOH 34 815 815 HOH TIP B . D 2 HOH 35 822 822 HOH TIP B . D 2 HOH 36 828 828 HOH TIP B . D 2 HOH 37 830 830 HOH TIP B . D 2 HOH 38 839 839 HOH TIP B . D 2 HOH 39 842 842 HOH TIP B . D 2 HOH 40 850 850 HOH TIP B . D 2 HOH 41 860 860 HOH TIP B . D 2 HOH 42 863 863 HOH TIP B . D 2 HOH 43 867 867 HOH TIP B . D 2 HOH 44 872 872 HOH TIP B . D 2 HOH 45 873 873 HOH TIP B . D 2 HOH 46 878 878 HOH TIP B . D 2 HOH 47 882 882 HOH TIP B . D 2 HOH 48 886 886 HOH TIP B . D 2 HOH 49 887 887 HOH TIP B . D 2 HOH 50 888 888 HOH TIP B . D 2 HOH 51 889 889 HOH TIP B . D 2 HOH 52 890 890 HOH TIP B . D 2 HOH 53 893 893 HOH TIP B . D 2 HOH 54 894 894 HOH TIP B . D 2 HOH 55 895 895 HOH TIP B . D 2 HOH 56 897 897 HOH TIP B . D 2 HOH 57 904 904 HOH TIP B . D 2 HOH 58 905 905 HOH TIP B . D 2 HOH 59 910 910 HOH TIP B . D 2 HOH 60 917 917 HOH TIP B . D 2 HOH 61 918 918 HOH TIP B . D 2 HOH 62 919 919 HOH TIP B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SMT 6 ? CB ? A SMT 6 CB 2 1 Y 1 A SMT 6 ? SC ? A SMT 6 SC 3 1 Y 1 A SMT 6 ? CD ? A SMT 6 CD # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 SHELXL-97 refinement . ? 4 XDS 'data reduction' . ? 5 # _cell.entry_id 1MLX _cell.length_a 24.728 _cell.length_b 44.473 _cell.length_c 46.229 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MLX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? # _exptl.entry_id 1MLX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.84 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;sodium cacodylate, potassium chloride, spermine tetrahydrochloride, 2-methyl-2,4-pentanediol (MPD), pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 KCl ? ? ? 1 3 1 'spermine tetrahydrochloride' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 KCl ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-12-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 1MLX _reflns.observed_criterion_sigma_F 4.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 20.0 _reflns.number_all 14088 _reflns.number_obs 12796 _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.29 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs 0.313 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1341 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MLX _refine.ls_d_res_high 1.25 _refine.ls_d_res_low 15.0 _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 14054 _refine.ls_number_reflns_obs 12784 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.141 _refine.ls_R_factor_obs 0.137 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 635 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 781 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.034 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.25 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.141 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1MLX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MLX _struct.title ;Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MLX _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;DNA, DOUBLE HELIX, A-FORM, ANTISENSE MODIFICATION, NUCLEIC ACID ANALOGUE, RNA AFFINITY, NUCLEASE RESISTANCE, PROTEIN BINDING AFFINITY, HIGH RESOLUTION STRUCTURE, HYDRATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1MLX _struct_ref.pdbx_db_accession 1MLX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MLX A 1 ? 10 ? 1MLX 1 ? 10 ? 1 10 2 1 1MLX B 1 ? 10 ? 1MLX 111 ? 120 ? 111 120 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A SMT 6 P ? ? A DA 5 A SMT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? A SMT 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A SMT 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B SMT 6 P ? ? B DA 115 B SMT 116 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale4 covale both ? B SMT 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B SMT 116 B DA 117 1_555 ? ? ? ? ? ? ? 1.619 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B SMT 6 N3 ? ? A DA 5 B SMT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B SMT 6 O4 ? ? A DA 5 B SMT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A SMT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A SMT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A SMT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A SMT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 793 ? ? O A HOH 864 ? ? 1.96 2 1 O B HOH 775 ? ? O B HOH 822 ? ? 2.09 3 1 O B HOH 777 ? ? O B HOH 863 ? ? 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A DC 2 ? ? C5 A DC 2 ? ? 1.475 1.425 0.050 0.008 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.502 1.420 0.082 0.011 N 3 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.449 1.496 -0.047 0.006 N 4 1 N1 A DA 5 ? ? C2 A DA 5 ? ? 1.398 1.339 0.059 0.009 N 5 1 C6 A DA 7 ? ? N1 A DA 7 ? ? 1.307 1.351 -0.044 0.007 N 6 1 C4 A DC 8 ? ? N4 A DC 8 ? ? 1.275 1.335 -0.060 0.009 N 7 1 C5 A DC 8 ? ? C6 A DC 8 ? ? 1.275 1.339 -0.064 0.008 N 8 1 C6 A DG 9 ? ? N1 A DG 9 ? ? 1.439 1.391 0.048 0.007 N 9 1 C2 A DC 10 ? ? O2 A DC 10 ? ? 1.184 1.240 -0.056 0.009 N 10 1 C2 A DC 10 ? ? N3 A DC 10 ? ? 1.403 1.353 0.050 0.008 N 11 1 N3 B DG 111 ? ? C4 B DG 111 ? ? 1.304 1.350 -0.046 0.007 N 12 1 C8 B DG 111 ? ? N9 B DG 111 ? ? 1.436 1.374 0.062 0.007 N 13 1 C2 B DG 113 ? ? N3 B DG 113 ? ? 1.275 1.323 -0.048 0.008 N 14 1 C5 B DT 114 ? ? C6 B DT 114 ? ? 1.270 1.339 -0.069 0.007 N 15 1 N1 B DA 115 ? ? C2 B DA 115 ? ? 1.269 1.339 -0.070 0.009 N 16 1 C6 B DA 117 ? ? N1 B DA 117 ? ? 1.397 1.351 0.046 0.007 N 17 1 N7 B DA 117 ? ? C8 B DA 117 ? ? 1.357 1.311 0.046 0.007 N 18 1 "C2'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.451 1.518 -0.067 0.010 N 19 1 C5 B DG 119 ? ? N7 B DG 119 ? ? 1.427 1.388 0.039 0.006 N 20 1 C4 B DC 120 ? ? C5 B DC 120 ? ? 1.475 1.425 0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 120.35 125.10 -4.75 0.60 N 2 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 128.25 123.90 4.35 0.60 N 3 1 N3 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 125.42 128.60 -3.18 0.50 N 4 1 C5 A DG 1 ? ? N7 A DG 1 ? ? C8 A DG 1 ? ? 100.45 104.30 -3.85 0.50 N 5 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.52 113.10 3.42 0.50 N 6 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DC 2 ? ? 128.19 119.70 8.49 1.20 Y 7 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 103.77 108.00 -4.23 0.70 N 8 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 120.35 125.10 -4.75 0.60 N 9 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 129.85 123.90 5.95 0.60 N 10 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 108.29 111.90 -3.61 0.50 N 11 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 109.67 113.10 -3.43 0.50 N 12 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 109.19 106.40 2.79 0.40 N 13 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 124.69 129.30 -4.61 0.50 N 14 1 C5 A DA 5 ? ? N7 A DA 5 ? ? C8 A DA 5 ? ? 107.06 103.90 3.16 0.50 N 15 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 110.53 113.80 -3.27 0.50 N 16 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 122.37 118.60 3.77 0.60 N 17 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 100.80 104.50 -3.70 0.40 N 18 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? "C2'" A DG 9 ? ? 109.80 106.80 3.00 0.50 N 19 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 119.05 125.10 -6.05 0.60 N 20 1 N1 A DG 9 ? ? C2 A DG 9 ? ? N3 A DG 9 ? ? 131.75 123.90 7.85 0.60 N 21 1 N3 A DG 9 ? ? C2 A DG 9 ? ? N2 A DG 9 ? ? 114.08 119.90 -5.82 0.70 N 22 1 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 115.14 119.90 -4.76 0.60 N 23 1 C5 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 132.20 128.60 3.60 0.60 N 24 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? N9 B DG 111 ? ? 103.22 108.00 -4.78 0.70 N 25 1 N1 B DG 111 ? ? C2 B DG 111 ? ? N3 B DG 111 ? ? 119.79 123.90 -4.11 0.60 N 26 1 C2 B DG 111 ? ? N3 B DG 111 ? ? C4 B DG 111 ? ? 116.88 111.90 4.98 0.50 N 27 1 C6 B DG 111 ? ? C5 B DG 111 ? ? N7 B DG 111 ? ? 126.64 130.40 -3.76 0.60 N 28 1 C6 B DC 112 ? ? N1 B DC 112 ? ? C2 B DC 112 ? ? 114.61 120.30 -5.69 0.40 N 29 1 C4 B DC 112 ? ? C5 B DC 112 ? ? C6 B DC 112 ? ? 113.34 117.40 -4.06 0.50 N 30 1 C5 B DC 112 ? ? C6 B DC 112 ? ? N1 B DC 112 ? ? 127.10 121.00 6.10 0.50 N 31 1 "O4'" B DG 113 ? ? "C4'" B DG 113 ? ? "C3'" B DG 113 ? ? 101.43 104.50 -3.07 0.40 N 32 1 N7 B DG 113 ? ? C8 B DG 113 ? ? N9 B DG 113 ? ? 116.56 113.10 3.46 0.50 N 33 1 C8 B DG 113 ? ? N9 B DG 113 ? ? C4 B DG 113 ? ? 103.66 106.40 -2.74 0.40 N 34 1 "O4'" B DT 114 ? ? "C4'" B DT 114 ? ? "C3'" B DT 114 ? ? 101.69 104.50 -2.81 0.40 N 35 1 C5 B DT 114 ? ? C6 B DT 114 ? ? N1 B DT 114 ? ? 128.26 123.70 4.56 0.60 N 36 1 C8 B DA 117 ? ? N9 B DA 117 ? ? C4 B DA 117 ? ? 108.82 105.80 3.02 0.40 N 37 1 N9 B DA 117 ? ? C4 B DA 117 ? ? C5 B DA 117 ? ? 103.36 105.80 -2.44 0.40 N 38 1 P B DG 119 ? ? "O5'" B DG 119 ? ? "C5'" B DG 119 ? ? 131.54 120.90 10.64 1.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SMT 6 A SMT 6 ? T ? 2 B SMT 6 B SMT 116 ? T ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 SMT P P N N 147 SMT OP1 O N N 148 SMT OP2 O N N 149 SMT OP3 O N N 150 SMT "O5'" O N N 151 SMT "C5'" C N N 152 SMT "C4'" C N R 153 SMT "O4'" O N N 154 SMT "C3'" C N R 155 SMT "O3'" O N N 156 SMT "C2'" C N R 157 SMT "O2'" O N N 158 SMT "C1'" C N R 159 SMT N1 N N N 160 SMT C2 C N N 161 SMT O2 O N N 162 SMT N3 N N N 163 SMT C4 C N N 164 SMT O4 O N N 165 SMT C5 C N N 166 SMT C5A C N N 167 SMT C6 C N N 168 SMT "CA'" C N N 169 SMT CB C N N 170 SMT SC S N N 171 SMT CD C N N 172 SMT H2P H N N 173 SMT H3P H N N 174 SMT "H5'" H N N 175 SMT "H5'2" H N N 176 SMT "H4'" H N N 177 SMT "H3'" H N N 178 SMT HO3 H N N 179 SMT "H2'" H N N 180 SMT "H1'" H N N 181 SMT H3 H N N 182 SMT H5A H N N 183 SMT H5A1 H N N 184 SMT H5A2 H N N 185 SMT H6 H N N 186 SMT HA1 H N N 187 SMT HA2 H N N 188 SMT HB1 H N N 189 SMT HB2 H N N 190 SMT HD1 H N N 191 SMT HD2 H N N 192 SMT HD3 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SMT P OP1 doub N N 152 SMT P OP2 sing N N 153 SMT P OP3 sing N N 154 SMT P "O5'" sing N N 155 SMT OP2 H2P sing N N 156 SMT OP3 H3P sing N N 157 SMT "O5'" "C5'" sing N N 158 SMT "C5'" "C4'" sing N N 159 SMT "C5'" "H5'" sing N N 160 SMT "C5'" "H5'2" sing N N 161 SMT "C4'" "O4'" sing N N 162 SMT "C4'" "C3'" sing N N 163 SMT "C4'" "H4'" sing N N 164 SMT "O4'" "C1'" sing N N 165 SMT "C3'" "O3'" sing N N 166 SMT "C3'" "C2'" sing N N 167 SMT "C3'" "H3'" sing N N 168 SMT "O3'" HO3 sing N N 169 SMT "C2'" "O2'" sing N N 170 SMT "C2'" "C1'" sing N N 171 SMT "C2'" "H2'" sing N N 172 SMT "O2'" "CA'" sing N N 173 SMT "C1'" N1 sing N N 174 SMT "C1'" "H1'" sing N N 175 SMT N1 C2 sing N N 176 SMT N1 C6 sing N N 177 SMT C2 O2 doub N N 178 SMT C2 N3 sing N N 179 SMT N3 C4 sing N N 180 SMT N3 H3 sing N N 181 SMT C4 O4 doub N N 182 SMT C4 C5 sing N N 183 SMT C5 C5A sing N N 184 SMT C5 C6 doub N N 185 SMT C5A H5A sing N N 186 SMT C5A H5A1 sing N N 187 SMT C5A H5A2 sing N N 188 SMT C6 H6 sing N N 189 SMT "CA'" CB sing N N 190 SMT "CA'" HA1 sing N N 191 SMT "CA'" HA2 sing N N 192 SMT CB SC sing N N 193 SMT CB HB1 sing N N 194 SMT CB HB2 sing N N 195 SMT SC CD sing N N 196 SMT CD HD1 sing N N 197 SMT CD HD2 sing N N 198 SMT CD HD3 sing N N 199 # _ndb_struct_conf_na.entry_id 1MLX _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.280 -0.127 0.135 2.940 -5.135 -1.535 1 A_DG1:DC120_B A 1 ? B 120 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.077 -0.055 0.058 5.391 -14.345 0.313 2 A_DC2:DG119_B A 2 ? B 119 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.303 -0.128 0.120 -6.712 -14.861 0.067 3 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.088 -0.085 0.066 -6.092 -16.398 -0.356 4 A_DT4:DA117_B A 4 ? B 117 ? 20 1 1 A DA 5 1_555 B SMT 6 1_555 0.150 -0.087 0.135 -2.801 -14.848 -4.462 5 A_DA5:SMT116_B A 5 ? B 116 ? 20 1 1 A SMT 6 1_555 B DA 5 1_555 0.023 -0.043 0.237 4.419 -16.386 7.887 6 A_SMT6:DA115_B A 6 ? B 115 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.026 -0.122 0.048 4.220 -12.277 3.884 7 A_DA7:DT114_B A 7 ? B 114 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.216 -0.176 -0.088 8.864 -12.987 -0.967 8 A_DC8:DG113_B A 8 ? B 113 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.148 -0.133 -0.135 -7.901 -8.635 1.479 9 A_DG9:DC112_B A 9 ? B 112 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.178 -0.114 0.130 -3.607 5.922 0.060 10 A_DC10:DG111_B A 10 ? B 111 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.332 -1.474 3.261 2.030 -0.291 38.539 -2.195 -0.251 3.285 -0.440 -3.072 38.592 1 AA_DG1DC2:DG119DC120_BB A 1 ? B 120 ? A 2 ? B 119 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.238 -2.156 3.416 -0.203 10.654 25.877 -6.788 -0.537 2.358 22.608 0.431 27.950 2 AA_DC2DG3:DC118DG119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -1.117 -1.510 3.196 -1.928 4.816 36.957 -2.969 1.502 3.034 7.551 3.023 37.306 3 AA_DG3DT4:DA117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B SMT 6 1_555 0.613 -1.563 3.107 2.069 18.699 25.527 -5.672 -0.814 1.650 36.641 -4.054 31.618 4 AA_DT4DA5:SMT116DA117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DA 5 1_555 B SMT 6 1_555 A SMT 6 1_555 B DA 5 1_555 1.054 -1.353 3.060 1.286 5.524 32.811 -3.199 -1.645 2.839 9.689 -2.256 33.285 5 AA_DA5SMT6:DA115SMT116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A SMT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.339 -1.390 3.072 0.397 14.938 30.468 -4.425 0.637 2.169 26.516 -0.704 33.857 6 AA_SMT6DA7:DT114DA115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.004 -1.878 3.251 0.288 3.329 29.596 -4.324 0.066 3.026 6.491 -0.561 29.780 7 AA_DA7DC8:DG113DT114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.303 -1.962 3.593 0.324 12.330 29.726 -5.719 0.605 2.591 22.835 -0.599 32.130 8 AA_DC8DG9:DC112DG113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.151 -1.685 3.308 -0.450 1.221 34.421 -3.036 -0.326 3.246 2.062 0.759 34.445 9 AA_DG9DC10:DG111DC112_BB A 9 ? B 112 ? A 10 ? B 111 ? # _atom_sites.entry_id 1MLX _atom_sites.fract_transf_matrix[1][1] 0.040440 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022486 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021631 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P S # loop_