HEADER TRANSCRIPTION/DNA 03-SEP-02 1MM8 TITLE CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH ME DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ME DNA TRANSFERRED STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ME DNA NON-TRANSFERRED STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TN5 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA SYNTHESIZED BY IDT; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: DNA SYNTHESIZED BY IDT; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 GENE: TN5 TRANSPOSASES; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PTYB4 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.STEINIGER-WHITE,A.BHASIN,S.LOVELL,I.RAYMENT,W.S.REZNIKOFF REVDAT 4 14-FEB-24 1MM8 1 REMARK REVDAT 3 27-OCT-21 1MM8 1 REMARK DBREF SEQADV LINK REVDAT 2 24-FEB-09 1MM8 1 VERSN REVDAT 1 13-DEC-02 1MM8 0 JRNL AUTH M.STEINIGER-WHITE,A.BHASIN,S.LOVELL,I.RAYMENT,W.S.REZNIKOFF JRNL TITL EVIDENCE FOR "UNSEEN" TRANSPOSASE--DNA CONTACTS JRNL REF J.MOL.BIOL. V. 322 971 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12367522 JRNL DOI 10.1016/S0022-2836(02)00877-X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3563 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96486 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 1500, 300 MM NA TARTRATE, 50 REMARK 280 MM HEPES, 5 MM MNCL2, PH 8., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.83333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 194.58333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 155.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.83333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.91667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.75000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 194.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -56.25000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.42786 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 428.08333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 VAL A -2 REMARK 465 THR A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 PRO A 373 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389 REMARK 465 SER A 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 324 O HOH A 747 2.00 REMARK 500 OG SER A 53 O HOH A 755 2.07 REMARK 500 O VAL A 359 O HOH A 736 2.17 REMARK 500 OP1 DG B 116 O HOH B 614 2.17 REMARK 500 O LEU A 422 O HOH A 729 2.17 REMARK 500 OG SER A 19 O HOH A 752 2.18 REMARK 500 N LEU A 363 O HOH A 736 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DT C 209 O HOH A 754 12566 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 205 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 PRO A 67 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -94.65 -80.26 REMARK 500 HIS A 7 53.44 -68.75 REMARK 500 ALA A 9 -56.15 -28.89 REMARK 500 TYR A 41 53.18 -113.22 REMARK 500 PRO A 67 -1.73 -53.31 REMARK 500 GLN A 87 -3.59 -53.38 REMARK 500 GLN A 106 -46.14 -22.98 REMARK 500 THR A 135 -75.23 -87.56 REMARK 500 SER A 178 -3.34 -58.81 REMARK 500 GLU A 190 -9.53 -52.56 REMARK 500 ASP A 192 75.41 -62.78 REMARK 500 LYS A 212 -60.84 -123.72 REMARK 500 GLU A 219 -71.56 -72.51 REMARK 500 LYS A 252 -138.33 -75.70 REMARK 500 ARG A 259 140.87 -174.22 REMARK 500 GLU A 286 172.35 -47.44 REMARK 500 VAL A 306 16.55 -144.26 REMARK 500 LYS A 333 -92.21 -94.54 REMARK 500 LYS A 412 -9.00 -149.50 REMARK 500 LYS A 418 -174.47 -56.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 119 0.07 SIDE CHAIN REMARK 500 DC C 205 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 120 O3' REMARK 620 2 ASP A 97 OD2 138.0 REMARK 620 3 GLU A 326 OE1 62.5 77.2 REMARK 620 4 HOH A 714 O 93.7 71.7 87.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 188 OD2 75.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END REMARK 900 DNA REMARK 900 RELATED ID: 1L1A RELATED DB: PDB REMARK 900 TN5 TRANSPOSASE: 20MER OUTSIDE END 2 MN COMPLEX DBREF 1MM8 A -3 476 UNP Q46731 Q46731_ECOLI 1 480 DBREF 1MM8 B 101 120 PDB 1MM8 1MM8 101 120 DBREF 1MM8 C 201 220 PDB 1MM8 1MM8 201 220 SEQADV 1MM8 LYS A 54 UNP Q46731 GLU 58 ENGINEERED MUTATION SEQADV 1MM8 ALA A 56 UNP Q46731 MET 60 ENGINEERED MUTATION SEQADV 1MM8 LYS A 345 UNP Q46731 GLU 349 ENGINEERED MUTATION SEQADV 1MM8 PRO A 372 UNP Q46731 LEU 376 ENGINEERED MUTATION SEQADV 1MM8 GLY A 477 UNP Q46731 CLONING ARTIFACT SEQRES 1 B 20 DG DA DG DA DT DG DT DG DT DA DT DA DA SEQRES 2 B 20 DG DA DG DA DC DA DG SEQRES 1 C 20 DC DT DG DT DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DT DC DT DC SEQRES 1 A 481 MET VAL THR PHE MET ILE THR SER ALA LEU HIS ARG ALA SEQRES 2 A 481 ALA ASP TRP ALA LYS SER VAL PHE SER SER ALA ALA LEU SEQRES 3 A 481 GLY ASP PRO ARG ARG THR ALA ARG LEU VAL ASN VAL ALA SEQRES 4 A 481 ALA GLN LEU ALA LYS TYR SER GLY LYS SER ILE THR ILE SEQRES 5 A 481 SER SER GLU GLY SER LYS ALA ALA GLN GLU GLY ALA TYR SEQRES 6 A 481 ARG PHE ILE ARG ASN PRO ASN VAL SER ALA GLU ALA ILE SEQRES 7 A 481 ARG LYS ALA GLY ALA MET GLN THR VAL LYS LEU ALA GLN SEQRES 8 A 481 GLU PHE PRO GLU LEU LEU ALA ILE GLU ASP THR THR SER SEQRES 9 A 481 LEU SER TYR ARG HIS GLN VAL ALA GLU GLU LEU GLY LYS SEQRES 10 A 481 LEU GLY SER ILE GLN ASP LYS SER ARG GLY TRP TRP VAL SEQRES 11 A 481 HIS SER VAL LEU LEU LEU GLU ALA THR THR PHE ARG THR SEQRES 12 A 481 VAL GLY LEU LEU HIS GLN GLU TRP TRP MET ARG PRO ASP SEQRES 13 A 481 ASP PRO ALA ASP ALA ASP GLU LYS GLU SER GLY LYS TRP SEQRES 14 A 481 LEU ALA ALA ALA ALA THR SER ARG LEU ARG MET GLY SER SEQRES 15 A 481 MET MET SER ASN VAL ILE ALA VAL CYS ASP ARG GLU ALA SEQRES 16 A 481 ASP ILE HIS ALA TYR LEU GLN ASP LYS LEU ALA HIS ASN SEQRES 17 A 481 GLU ARG PHE VAL VAL ARG SER LYS HIS PRO ARG LYS ASP SEQRES 18 A 481 VAL GLU SER GLY LEU TYR LEU TYR ASP HIS LEU LYS ASN SEQRES 19 A 481 GLN PRO GLU LEU GLY GLY TYR GLN ILE SER ILE PRO GLN SEQRES 20 A 481 LYS GLY VAL VAL ASP LYS ARG GLY LYS ARG LYS ASN ARG SEQRES 21 A 481 PRO ALA ARG LYS ALA SER LEU SER LEU ARG SER GLY ARG SEQRES 22 A 481 ILE THR LEU LYS GLN GLY ASN ILE THR LEU ASN ALA VAL SEQRES 23 A 481 LEU ALA GLU GLU ILE ASN PRO PRO LYS GLY GLU THR PRO SEQRES 24 A 481 LEU LYS TRP LEU LEU LEU THR SER GLU PRO VAL GLU SER SEQRES 25 A 481 LEU ALA GLN ALA LEU ARG VAL ILE ASP ILE TYR THR HIS SEQRES 26 A 481 ARG TRP ARG ILE GLU GLU PHE HIS LYS ALA TRP LYS THR SEQRES 27 A 481 GLY ALA GLY ALA GLU ARG GLN ARG MET GLU LYS PRO ASP SEQRES 28 A 481 ASN LEU GLU ARG MET VAL SER ILE LEU SER PHE VAL ALA SEQRES 29 A 481 VAL ARG LEU LEU GLN LEU ARG GLU SER PHE THR PRO PRO SEQRES 30 A 481 GLN ALA LEU ARG ALA GLN GLY LEU LEU LYS GLU ALA GLU SEQRES 31 A 481 HIS VAL GLU SER GLN SER ALA GLU THR VAL LEU THR PRO SEQRES 32 A 481 ASP GLU CYS GLN LEU LEU GLY TYR LEU ASP LYS GLY LYS SEQRES 33 A 481 ARG LYS ARG LYS GLU LYS ALA GLY SER LEU GLN TRP ALA SEQRES 34 A 481 TYR MET ALA ILE ALA ARG LEU GLY GLY PHE MET ASP SER SEQRES 35 A 481 LYS ARG THR GLY ILE ALA SER TRP GLY ALA LEU TRP GLU SEQRES 36 A 481 GLY TRP GLU ALA LEU GLN SER LYS LEU ASP GLY PHE LEU SEQRES 37 A 481 ALA ALA LYS ASP LEU MET ALA GLN GLY ILE LYS ILE GLY HET MN A 500 1 HET MN A 501 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN 2(MN 2+) FORMUL 6 HOH *254(H2 O) HELIX 1 1 HIS A 7 SER A 18 1 12 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ASN A 66 1 14 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 HIS A 203 1 11 HELIX 13 13 TYR A 223 LYS A 229 1 7 HELIX 14 14 LYS A 273 ASN A 276 5 4 HELIX 15 15 SER A 308 HIS A 321 1 14 HELIX 16 16 TRP A 323 LYS A 333 1 11 HELIX 17 17 GLY A 337 GLN A 341 5 5 HELIX 18 18 LYS A 345 PHE A 370 1 26 HELIX 19 19 SER A 392 VAL A 396 5 5 HELIX 20 20 THR A 398 ASP A 409 1 12 HELIX 21 21 GLN A 423 GLY A 434 1 12 HELIX 22 22 SER A 445 ALA A 471 1 27 SHEET 1 A 9 GLY A 235 ILE A 241 0 SHEET 2 A 9 ARG A 259 THR A 271 -1 O ALA A 261 N ILE A 239 SHEET 3 A 9 THR A 278 ILE A 287 -1 O LEU A 279 N ILE A 270 SHEET 4 A 9 LYS A 297 THR A 302 -1 O TRP A 298 N ALA A 284 SHEET 5 A 9 ARG A 206 ARG A 210 -1 N VAL A 209 O LEU A 301 SHEET 6 A 9 VAL A 183 CYS A 187 1 N ALA A 185 O VAL A 208 SHEET 7 A 9 LEU A 92 TYR A 103 1 N ALA A 94 O ILE A 184 SHEET 8 A 9 ARG A 122 GLU A 133 -1 O ARG A 122 N TYR A 103 SHEET 9 A 9 GLY A 112 LYS A 113 -1 N GLY A 112 O GLY A 123 SHEET 1 B 9 GLY A 235 ILE A 241 0 SHEET 2 B 9 ARG A 259 THR A 271 -1 O ALA A 261 N ILE A 239 SHEET 3 B 9 THR A 278 ILE A 287 -1 O LEU A 279 N ILE A 270 SHEET 4 B 9 LYS A 297 THR A 302 -1 O TRP A 298 N ALA A 284 SHEET 5 B 9 ARG A 206 ARG A 210 -1 N VAL A 209 O LEU A 301 SHEET 6 B 9 VAL A 183 CYS A 187 1 N ALA A 185 O VAL A 208 SHEET 7 B 9 LEU A 92 TYR A 103 1 N ALA A 94 O ILE A 184 SHEET 8 B 9 ARG A 122 GLU A 133 -1 O ARG A 122 N TYR A 103 SHEET 9 B 9 THR A 139 TRP A 148 -1 O GLY A 141 N LEU A 131 SHEET 1 C 2 LYS A 244 VAL A 246 0 SHEET 2 C 2 LYS A 254 ARG A 256 -1 O ARG A 256 N LYS A 244 LINK O3' DG B 120 MN MN A 500 1555 1555 2.45 LINK OD2 ASP A 97 MN MN A 500 1555 1555 2.09 LINK OD1 ASP A 97 MN MN A 501 1555 1555 2.68 LINK OD2 ASP A 188 MN MN A 501 1555 1555 2.68 LINK OE1 GLU A 326 MN MN A 500 1555 1555 2.52 LINK MN MN A 500 O HOH A 714 1555 1555 2.04 SITE 1 AC1 5 ASP A 97 THR A 98 GLU A 326 HOH A 714 SITE 2 AC1 5 DG B 120 SITE 1 AC2 4 ASP A 97 ASP A 188 HOH A 692 HOH A 714 CRYST1 112.500 112.500 233.500 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008889 0.005132 0.000000 0.00000 SCALE2 0.000000 0.010264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004283 0.00000