HEADER LYASE 03-SEP-02 1MMF TITLE CRYSTAL STRUCTURE OF SUBSTRATE FREE FORM OF GLYCEROL DEHYDRATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL DEHYDRASE ALPHA SUBUNIT; COMPND 3 CHAIN: A, L; COMPND 4 SYNONYM: GLYCEROL DEHYDRATASE ALPHA SUBUNIT; COMPND 5 EC: 4.2.1.30; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLYCEROL DEHYDRASE BETA SUBUNIT; COMPND 9 CHAIN: B, E; COMPND 10 SYNONYM: GLYCEROL DEHYDRATASE BETA SUBUNIT; COMPND 11 EC: 4.2.1.30; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GLYCEROL DEHYDRASE GAMMA SUBUNIT; COMPND 15 CHAIN: G, M; COMPND 16 SYNONYM: GLYCEROL DEHYDRATASE GAMMA SUBUNIT; COMPND 17 EC: 4.2.1.30; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT SKII; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 11 ORGANISM_TAXID: 573; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT SKII; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 19 ORGANISM_TAXID: 573; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT SKII KEYWDS GLYCEROL DEHYDRATASE, DIOL DEHYDRATASE, COENZYME B12, TIM BARREL, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.I.LIAO,G.DOTSON,I.TURNER,L.REISS,M.EMPTAGE REVDAT 4 14-FEB-24 1MMF 1 REMARK SEQADV LINK REVDAT 3 24-OCT-12 1MMF 1 FORMUL VERSN REVDAT 2 24-FEB-09 1MMF 1 VERSN REVDAT 1 10-JUN-03 1MMF 0 JRNL AUTH D.I.LIAO,G.DOTSON,I.TURNER,L.REISS,M.EMPTAGE JRNL TITL CRYSTAL STRUCTURE OF SUBSTRATE FREE FORM OF GLYCEROL JRNL TITL 2 DEHYDRATASE JRNL REF J.INORG.BIOCHEM. V. 93 84 2003 JRNL REFN ISSN 0162-0134 JRNL PMID 12538056 JRNL DOI 10.1016/S0162-0134(02)00523-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 64004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3246 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 184 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.370 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMONIUM SULFATE, RBCL2, CDCL2, REMARK 280 CYANOCOBALAMIN, CHES, PH 9.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.03500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGYICAL ASSEMBLY OF GLYCEROL DEHYDRATASE IS A REMARK 300 HETEROHEXAMER. IT IS A DIMER OF ALPHA-BETA-GAMMA TRIMERS. THE REMARK 300 ASYMMETRIC UNIT IN THE CRYSTAL CONTAINS AN ENTIRE HETEROHEXAMER. REMARK 300 CHAIN NAMES FOR SUBUNITS ARE A, B, AND G FARE ONE TRIMER AND L, E REMARK 300 AND M FOR THE SECOND TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, E, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, L, E, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 553 REMARK 465 ILE A 554 REMARK 465 GLU A 555 REMARK 465 VAL B 1 REMARK 465 GLN B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 ILE B 7 REMARK 465 GLN B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 VAL B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 GLU G 3 REMARK 465 LYS G 4 REMARK 465 THR G 5 REMARK 465 MET G 6 REMARK 465 ARG G 7 REMARK 465 VAL G 8 REMARK 465 GLN G 9 REMARK 465 VAL E 1 REMARK 465 GLN E 2 REMARK 465 GLN E 3 REMARK 465 THR E 4 REMARK 465 THR E 5 REMARK 465 GLN E 6 REMARK 465 ILE E 7 REMARK 465 GLN E 8 REMARK 465 PRO E 9 REMARK 465 GLU E 194 REMARK 465 MET M 1 REMARK 465 SER M 2 REMARK 465 GLU M 3 REMARK 465 LYS M 4 REMARK 465 THR M 5 REMARK 465 MET M 6 REMARK 465 ARG M 7 REMARK 465 VAL M 8 REMARK 465 GLN M 9 REMARK 465 ASP M 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER L 272 N SER L 274 2.02 REMARK 500 O GLU L 26 OG SER L 274 2.14 REMARK 500 NH2 ARG M 74 O HOH M 151 2.19 REMARK 500 C SER L 272 N SER L 274 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE L 380 CE1 PHE L 380 CZ 0.261 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU L 273 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 SER L 274 O - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 150.77 81.30 REMARK 500 ASN A 16 4.18 -69.71 REMARK 500 ASP A 33 71.30 22.12 REMARK 500 ARG A 57 -34.70 -38.57 REMARK 500 TYR A 70 -33.07 -138.41 REMARK 500 ASN A 73 93.22 -68.45 REMARK 500 SER A 140 -160.79 -124.47 REMARK 500 ARG A 178 -10.31 -47.67 REMARK 500 GLU A 206 -66.88 -27.59 REMARK 500 THR A 223 44.41 -77.13 REMARK 500 SER A 261 -144.80 -150.88 REMARK 500 ALA A 300 -40.99 71.55 REMARK 500 VAL A 301 -121.89 51.58 REMARK 500 MET A 306 -74.46 -79.68 REMARK 500 ALA A 334 -124.98 42.87 REMARK 500 PHE A 339 -19.22 -150.93 REMARK 500 ARG A 425 -71.99 -62.57 REMARK 500 SER A 446 -1.43 -59.19 REMARK 500 TYR A 502 22.89 -79.77 REMARK 500 ASP A 510 -168.62 -106.76 REMARK 500 ALA A 518 -1.09 -58.63 REMARK 500 ASP A 521 56.19 -152.62 REMARK 500 ASP A 524 33.99 -140.28 REMARK 500 GLN A 526 33.48 -143.72 REMARK 500 GLU B 25 26.94 -140.49 REMARK 500 ASP B 28 47.18 -87.75 REMARK 500 LYS B 40 -65.42 -170.98 REMARK 500 HIS B 43 -16.51 -140.71 REMARK 500 GLU B 64 -18.87 -48.89 REMARK 500 ASN B 89 34.13 -81.01 REMARK 500 LEU B 90 -15.45 -147.94 REMARK 500 ASN B 117 -175.07 -173.64 REMARK 500 PRO B 150 153.22 -47.55 REMARK 500 ALA G 14 -76.37 -51.99 REMARK 500 CYS G 17 70.74 61.61 REMARK 500 ILE G 32 65.59 -68.30 REMARK 500 VAL G 47 74.40 -67.48 REMARK 500 PHE G 97 -2.22 65.67 REMARK 500 LYS G 139 -78.99 -3.93 REMARK 500 LYS L 2 165.37 81.66 REMARK 500 ASP L 33 58.22 32.19 REMARK 500 SER L 140 -163.83 -124.71 REMARK 500 ARG L 178 -13.89 -43.48 REMARK 500 THR L 223 43.89 -75.19 REMARK 500 SER L 261 -146.01 -148.53 REMARK 500 TYR L 271 75.80 -150.34 REMARK 500 GLU L 273 2.67 46.35 REMARK 500 ALA L 300 -45.89 74.37 REMARK 500 VAL L 301 -121.60 53.04 REMARK 500 MET L 306 -71.50 -87.29 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE L 380 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 142 OE1 REMARK 620 2 GLU A 171 OE1 94.9 REMARK 620 3 GLU A 171 OE2 71.5 42.1 REMARK 620 4 GLU A 222 OE2 65.5 66.3 88.3 REMARK 620 5 GLN A 297 OE1 119.5 124.1 165.5 88.2 REMARK 620 6 SER A 363 O 66.2 149.3 107.3 120.4 86.6 REMARK 620 7 HOH A1006 O 159.8 65.0 92.7 102.5 74.3 132.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K L1002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN L 142 OE1 REMARK 620 2 GLU L 171 OE2 71.0 REMARK 620 3 GLU L 222 OE1 66.4 91.0 REMARK 620 4 GLN L 297 OE1 127.0 158.9 87.7 REMARK 620 5 SER L 363 O 68.2 114.8 115.1 84.7 REMARK 620 6 HOH L1006 O 128.4 78.4 155.3 94.3 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K L 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B12 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B12 E 602 DBREF 1MMF A 1 555 UNP Q59476 Q59476_KLEPN 1 555 DBREF 1MMF B 1 194 UNP O08505 O08505_KLEPN 2 194 DBREF 1MMF G 1 141 UNP Q59475 Q59475_KLEPN 1 141 DBREF 1MMF L 1 555 UNP Q59476 Q59476_KLEPN 1 555 DBREF 1MMF E 1 194 UNP O08505 O08505_KLEPN 2 194 DBREF 1MMF M 1 141 UNP Q59475 Q59475_KLEPN 1 141 SEQADV 1MMF VAL B 1 UNP O08505 MET 1 CONFLICT SEQADV 1MMF VAL E 1 UNP O08505 MET 1 CONFLICT SEQRES 1 A 555 MET LYS ARG SER LYS ARG PHE ALA VAL LEU ALA GLN ARG SEQRES 2 A 555 PRO VAL ASN GLN ASP GLY LEU ILE GLY GLU TRP PRO GLU SEQRES 3 A 555 GLU GLY LEU ILE ALA MET ASP SER PRO PHE ASP PRO VAL SEQRES 4 A 555 SER SER VAL LYS VAL ASP ASN GLY LEU ILE VAL GLU LEU SEQRES 5 A 555 ASP GLY LYS ARG ARG ASP GLN PHE ASP MET ILE ASP ARG SEQRES 6 A 555 PHE ILE ALA ASP TYR ALA ILE ASN VAL GLU ARG THR GLU SEQRES 7 A 555 GLN ALA MET ARG LEU GLU ALA VAL GLU ILE ALA ARG MET SEQRES 8 A 555 LEU VAL ASP ILE HIS VAL SER ARG GLU GLU ILE ILE ALA SEQRES 9 A 555 ILE THR THR ALA ILE THR PRO ALA LYS ALA VAL GLU VAL SEQRES 10 A 555 MET ALA GLN MET ASN VAL VAL GLU MET MET MET ALA LEU SEQRES 11 A 555 GLN LYS MET ARG ALA ARG ARG THR PRO SER ASN GLN CYS SEQRES 12 A 555 HIS VAL THR ASN LEU LYS ASP ASN PRO VAL GLN ILE ALA SEQRES 13 A 555 ALA ASP ALA ALA GLU ALA GLY ILE ARG GLY PHE SER GLU SEQRES 14 A 555 GLN GLU THR THR VAL GLY ILE ALA ARG TYR ALA PRO PHE SEQRES 15 A 555 ASN ALA LEU ALA LEU LEU VAL GLY SER GLN CYS GLY ARG SEQRES 16 A 555 PRO GLY VAL LEU THR GLN CYS SER VAL GLU GLU ALA THR SEQRES 17 A 555 GLU LEU GLU LEU GLY MET ARG GLY LEU THR SER TYR ALA SEQRES 18 A 555 GLU THR VAL SER VAL TYR GLY THR GLU ALA VAL PHE THR SEQRES 19 A 555 ASP GLY ASP ASP THR PRO TRP SER LYS ALA PHE LEU ALA SEQRES 20 A 555 SER ALA TYR ALA SER ARG GLY LEU LYS MET ARG TYR THR SEQRES 21 A 555 SER GLY THR GLY SER GLU ALA LEU MET GLY TYR SER GLU SEQRES 22 A 555 SER LYS SER MET LEU TYR LEU GLU SER ARG CYS ILE PHE SEQRES 23 A 555 ILE THR LYS GLY ALA GLY VAL GLN GLY LEU GLN ASN GLY SEQRES 24 A 555 ALA VAL SER CYS ILE GLY MET THR GLY ALA VAL PRO SER SEQRES 25 A 555 GLY ILE ARG ALA VAL LEU ALA GLU ASN LEU ILE ALA SER SEQRES 26 A 555 MET LEU ASP LEU GLU VAL ALA SER ALA ASN ASP GLN THR SEQRES 27 A 555 PHE SER HIS SER ASP ILE ARG ARG THR ALA ARG THR LEU SEQRES 28 A 555 MET GLN MET LEU PRO GLY THR ASP PHE ILE PHE SER GLY SEQRES 29 A 555 TYR SER ALA VAL PRO ASN TYR ASP ASN MET PHE ALA GLY SEQRES 30 A 555 SER ASN PHE ASP ALA GLU ASP PHE ASP ASP TYR ASN ILE SEQRES 31 A 555 LEU GLN ARG ASP LEU MET VAL ASP GLY GLY LEU ARG PRO SEQRES 32 A 555 VAL THR GLU ALA GLU THR ILE ALA ILE ARG GLN LYS ALA SEQRES 33 A 555 ALA ARG ALA ILE GLN ALA VAL PHE ARG GLU LEU GLY LEU SEQRES 34 A 555 PRO PRO ILE ALA ASP GLU GLU VAL GLU ALA ALA THR TYR SEQRES 35 A 555 ALA HIS GLY SER ASN GLU MET PRO PRO ARG ASN VAL VAL SEQRES 36 A 555 GLU ASP LEU SER ALA VAL GLU GLU MET MET LYS ARG ASN SEQRES 37 A 555 ILE THR GLY LEU ASP ILE VAL GLY ALA LEU SER ARG SER SEQRES 38 A 555 GLY PHE GLU ASP ILE ALA SER ASN ILE LEU ASN MET LEU SEQRES 39 A 555 ARG GLN ARG VAL THR GLY ASP TYR LEU GLN THR SER ALA SEQRES 40 A 555 ILE LEU ASP ARG GLN PHE GLU VAL VAL SER ALA VAL ASN SEQRES 41 A 555 ASP ILE ASN ASP TYR GLN GLY PRO GLY THR GLY TYR ARG SEQRES 42 A 555 ILE SER ALA GLU ARG TRP ALA GLU ILE LYS ASN ILE PRO SEQRES 43 A 555 GLY VAL VAL GLN PRO ASP THR ILE GLU SEQRES 1 B 194 VAL GLN GLN THR THR GLN ILE GLN PRO SER PHE THR LEU SEQRES 2 B 194 LYS THR ARG GLU GLY GLY VAL ALA SER ALA ASP GLU ARG SEQRES 3 B 194 ALA ASP GLU VAL VAL ILE GLY VAL GLY PRO ALA PHE ASP SEQRES 4 B 194 LYS HIS GLN HIS HIS THR LEU ILE ASP MET PRO HIS GLY SEQRES 5 B 194 ALA ILE LEU LYS GLU LEU ILE ALA GLY VAL GLU GLU GLU SEQRES 6 B 194 GLY LEU HIS ALA ARG VAL VAL ARG ILE LEU ARG THR SER SEQRES 7 B 194 ASP VAL SER PHE MET ALA TRP ASP ALA ALA ASN LEU SER SEQRES 8 B 194 GLY SER GLY ILE GLY ILE GLY ILE GLN SER LYS GLY THR SEQRES 9 B 194 THR VAL ILE HIS GLN ARG ASP LEU LEU PRO LEU SER ASN SEQRES 10 B 194 LEU GLU LEU PHE SER GLN ALA PRO LEU LEU THR LEU GLU SEQRES 11 B 194 THR TYR ARG GLN ILE GLY LYS ASN ALA ALA ARG TYR ALA SEQRES 12 B 194 ARG LYS GLU SER PRO SER PRO VAL PRO VAL VAL ASN ASP SEQRES 13 B 194 GLN MET VAL ARG PRO LYS PHE MET ALA LYS ALA ALA LEU SEQRES 14 B 194 PHE HIS ILE LYS GLU THR LYS HIS VAL VAL GLN ASP ALA SEQRES 15 B 194 GLU PRO VAL THR LEU HIS ILE ASP LEU VAL ARG GLU SEQRES 1 G 141 MET SER GLU LYS THR MET ARG VAL GLN ASP TYR PRO LEU SEQRES 2 G 141 ALA THR ARG CYS PRO GLU HIS ILE LEU THR PRO THR GLY SEQRES 3 G 141 LYS PRO LEU THR ASP ILE THR LEU GLU LYS VAL LEU SER SEQRES 4 G 141 GLY GLU VAL GLY PRO GLN ASP VAL ARG ILE SER ARG GLN SEQRES 5 G 141 THR LEU GLU TYR GLN ALA GLN ILE ALA GLU GLN MET GLN SEQRES 6 G 141 ARG HIS ALA VAL ALA ARG ASN PHE ARG ARG ALA ALA GLU SEQRES 7 G 141 LEU ILE ALA ILE PRO ASP GLU ARG ILE LEU ALA ILE TYR SEQRES 8 G 141 ASN ALA LEU ARG PRO PHE ARG SER SER GLN ALA GLU LEU SEQRES 9 G 141 LEU ALA ILE ALA ASP GLU LEU GLU HIS THR TRP HIS ALA SEQRES 10 G 141 THR VAL ASN ALA ALA PHE VAL ARG GLU SER ALA GLU VAL SEQRES 11 G 141 TYR GLN GLN ARG HIS LYS LEU ARG LYS GLY SER SEQRES 1 L 555 MET LYS ARG SER LYS ARG PHE ALA VAL LEU ALA GLN ARG SEQRES 2 L 555 PRO VAL ASN GLN ASP GLY LEU ILE GLY GLU TRP PRO GLU SEQRES 3 L 555 GLU GLY LEU ILE ALA MET ASP SER PRO PHE ASP PRO VAL SEQRES 4 L 555 SER SER VAL LYS VAL ASP ASN GLY LEU ILE VAL GLU LEU SEQRES 5 L 555 ASP GLY LYS ARG ARG ASP GLN PHE ASP MET ILE ASP ARG SEQRES 6 L 555 PHE ILE ALA ASP TYR ALA ILE ASN VAL GLU ARG THR GLU SEQRES 7 L 555 GLN ALA MET ARG LEU GLU ALA VAL GLU ILE ALA ARG MET SEQRES 8 L 555 LEU VAL ASP ILE HIS VAL SER ARG GLU GLU ILE ILE ALA SEQRES 9 L 555 ILE THR THR ALA ILE THR PRO ALA LYS ALA VAL GLU VAL SEQRES 10 L 555 MET ALA GLN MET ASN VAL VAL GLU MET MET MET ALA LEU SEQRES 11 L 555 GLN LYS MET ARG ALA ARG ARG THR PRO SER ASN GLN CYS SEQRES 12 L 555 HIS VAL THR ASN LEU LYS ASP ASN PRO VAL GLN ILE ALA SEQRES 13 L 555 ALA ASP ALA ALA GLU ALA GLY ILE ARG GLY PHE SER GLU SEQRES 14 L 555 GLN GLU THR THR VAL GLY ILE ALA ARG TYR ALA PRO PHE SEQRES 15 L 555 ASN ALA LEU ALA LEU LEU VAL GLY SER GLN CYS GLY ARG SEQRES 16 L 555 PRO GLY VAL LEU THR GLN CYS SER VAL GLU GLU ALA THR SEQRES 17 L 555 GLU LEU GLU LEU GLY MET ARG GLY LEU THR SER TYR ALA SEQRES 18 L 555 GLU THR VAL SER VAL TYR GLY THR GLU ALA VAL PHE THR SEQRES 19 L 555 ASP GLY ASP ASP THR PRO TRP SER LYS ALA PHE LEU ALA SEQRES 20 L 555 SER ALA TYR ALA SER ARG GLY LEU LYS MET ARG TYR THR SEQRES 21 L 555 SER GLY THR GLY SER GLU ALA LEU MET GLY TYR SER GLU SEQRES 22 L 555 SER LYS SER MET LEU TYR LEU GLU SER ARG CYS ILE PHE SEQRES 23 L 555 ILE THR LYS GLY ALA GLY VAL GLN GLY LEU GLN ASN GLY SEQRES 24 L 555 ALA VAL SER CYS ILE GLY MET THR GLY ALA VAL PRO SER SEQRES 25 L 555 GLY ILE ARG ALA VAL LEU ALA GLU ASN LEU ILE ALA SER SEQRES 26 L 555 MET LEU ASP LEU GLU VAL ALA SER ALA ASN ASP GLN THR SEQRES 27 L 555 PHE SER HIS SER ASP ILE ARG ARG THR ALA ARG THR LEU SEQRES 28 L 555 MET GLN MET LEU PRO GLY THR ASP PHE ILE PHE SER GLY SEQRES 29 L 555 TYR SER ALA VAL PRO ASN TYR ASP ASN MET PHE ALA GLY SEQRES 30 L 555 SER ASN PHE ASP ALA GLU ASP PHE ASP ASP TYR ASN ILE SEQRES 31 L 555 LEU GLN ARG ASP LEU MET VAL ASP GLY GLY LEU ARG PRO SEQRES 32 L 555 VAL THR GLU ALA GLU THR ILE ALA ILE ARG GLN LYS ALA SEQRES 33 L 555 ALA ARG ALA ILE GLN ALA VAL PHE ARG GLU LEU GLY LEU SEQRES 34 L 555 PRO PRO ILE ALA ASP GLU GLU VAL GLU ALA ALA THR TYR SEQRES 35 L 555 ALA HIS GLY SER ASN GLU MET PRO PRO ARG ASN VAL VAL SEQRES 36 L 555 GLU ASP LEU SER ALA VAL GLU GLU MET MET LYS ARG ASN SEQRES 37 L 555 ILE THR GLY LEU ASP ILE VAL GLY ALA LEU SER ARG SER SEQRES 38 L 555 GLY PHE GLU ASP ILE ALA SER ASN ILE LEU ASN MET LEU SEQRES 39 L 555 ARG GLN ARG VAL THR GLY ASP TYR LEU GLN THR SER ALA SEQRES 40 L 555 ILE LEU ASP ARG GLN PHE GLU VAL VAL SER ALA VAL ASN SEQRES 41 L 555 ASP ILE ASN ASP TYR GLN GLY PRO GLY THR GLY TYR ARG SEQRES 42 L 555 ILE SER ALA GLU ARG TRP ALA GLU ILE LYS ASN ILE PRO SEQRES 43 L 555 GLY VAL VAL GLN PRO ASP THR ILE GLU SEQRES 1 E 194 VAL GLN GLN THR THR GLN ILE GLN PRO SER PHE THR LEU SEQRES 2 E 194 LYS THR ARG GLU GLY GLY VAL ALA SER ALA ASP GLU ARG SEQRES 3 E 194 ALA ASP GLU VAL VAL ILE GLY VAL GLY PRO ALA PHE ASP SEQRES 4 E 194 LYS HIS GLN HIS HIS THR LEU ILE ASP MET PRO HIS GLY SEQRES 5 E 194 ALA ILE LEU LYS GLU LEU ILE ALA GLY VAL GLU GLU GLU SEQRES 6 E 194 GLY LEU HIS ALA ARG VAL VAL ARG ILE LEU ARG THR SER SEQRES 7 E 194 ASP VAL SER PHE MET ALA TRP ASP ALA ALA ASN LEU SER SEQRES 8 E 194 GLY SER GLY ILE GLY ILE GLY ILE GLN SER LYS GLY THR SEQRES 9 E 194 THR VAL ILE HIS GLN ARG ASP LEU LEU PRO LEU SER ASN SEQRES 10 E 194 LEU GLU LEU PHE SER GLN ALA PRO LEU LEU THR LEU GLU SEQRES 11 E 194 THR TYR ARG GLN ILE GLY LYS ASN ALA ALA ARG TYR ALA SEQRES 12 E 194 ARG LYS GLU SER PRO SER PRO VAL PRO VAL VAL ASN ASP SEQRES 13 E 194 GLN MET VAL ARG PRO LYS PHE MET ALA LYS ALA ALA LEU SEQRES 14 E 194 PHE HIS ILE LYS GLU THR LYS HIS VAL VAL GLN ASP ALA SEQRES 15 E 194 GLU PRO VAL THR LEU HIS ILE ASP LEU VAL ARG GLU SEQRES 1 M 141 MET SER GLU LYS THR MET ARG VAL GLN ASP TYR PRO LEU SEQRES 2 M 141 ALA THR ARG CYS PRO GLU HIS ILE LEU THR PRO THR GLY SEQRES 3 M 141 LYS PRO LEU THR ASP ILE THR LEU GLU LYS VAL LEU SER SEQRES 4 M 141 GLY GLU VAL GLY PRO GLN ASP VAL ARG ILE SER ARG GLN SEQRES 5 M 141 THR LEU GLU TYR GLN ALA GLN ILE ALA GLU GLN MET GLN SEQRES 6 M 141 ARG HIS ALA VAL ALA ARG ASN PHE ARG ARG ALA ALA GLU SEQRES 7 M 141 LEU ILE ALA ILE PRO ASP GLU ARG ILE LEU ALA ILE TYR SEQRES 8 M 141 ASN ALA LEU ARG PRO PHE ARG SER SER GLN ALA GLU LEU SEQRES 9 M 141 LEU ALA ILE ALA ASP GLU LEU GLU HIS THR TRP HIS ALA SEQRES 10 M 141 THR VAL ASN ALA ALA PHE VAL ARG GLU SER ALA GLU VAL SEQRES 11 M 141 TYR GLN GLN ARG HIS LYS LEU ARG LYS GLY SER HET K A1001 1 HET B12 B 601 91 HET K L1002 1 HET B12 E 602 91 HETNAM K POTASSIUM ION HETNAM B12 COBALAMIN FORMUL 7 K 2(K 1+) FORMUL 8 B12 2(C62 H89 CO N13 O14 P 2+) FORMUL 11 HOH *207(H2 O) HELIX 1 1 SER A 4 GLN A 12 1 9 HELIX 2 2 ARG A 13 ASP A 18 5 6 HELIX 3 3 TRP A 24 GLY A 28 5 5 HELIX 4 4 ASP A 58 PHE A 60 5 3 HELIX 5 5 ASP A 61 ALA A 71 1 11 HELIX 6 6 ASN A 73 MET A 81 1 9 HELIX 7 7 GLU A 84 ASP A 94 1 11 HELIX 8 8 SER A 98 THR A 107 1 10 HELIX 9 9 THR A 110 ALA A 119 1 10 HELIX 10 10 ASN A 122 ARG A 134 1 13 HELIX 11 11 ASN A 151 GLY A 166 1 16 HELIX 12 12 ILE A 176 ARG A 178 5 3 HELIX 13 13 TYR A 179 ARG A 195 1 17 HELIX 14 14 GLU A 205 ARG A 215 1 11 HELIX 15 15 THR A 229 GLY A 236 1 8 HELIX 16 16 THR A 239 SER A 252 1 14 HELIX 17 17 GLY A 264 MET A 269 1 6 HELIX 18 18 SER A 276 GLY A 292 1 17 HELIX 19 19 ALA A 300 SER A 302 5 3 HELIX 20 20 CYS A 303 GLY A 308 1 6 HELIX 21 21 SER A 312 LEU A 327 1 16 HELIX 22 22 SER A 342 LEU A 355 1 14 HELIX 23 23 PRO A 369 ASN A 373 5 5 HELIX 24 24 ASP A 381 GLU A 383 5 3 HELIX 25 25 ASP A 384 MET A 396 1 13 HELIX 26 26 THR A 405 GLY A 428 1 24 HELIX 27 27 ALA A 433 ALA A 443 1 11 HELIX 28 28 GLY A 445 MET A 449 5 5 HELIX 29 29 ASN A 453 ASN A 468 1 16 HELIX 30 30 THR A 470 ARG A 480 1 11 HELIX 31 31 PHE A 483 GLY A 500 1 18 HELIX 32 32 ASP A 501 GLN A 504 5 4 HELIX 33 33 SER A 535 ASN A 544 1 10 HELIX 34 34 PRO B 50 GLU B 64 1 15 HELIX 35 35 ASP B 79 ASN B 89 1 11 HELIX 36 36 GLN B 123 LEU B 127 5 5 HELIX 37 37 THR B 128 ARG B 144 1 17 HELIX 38 38 MET B 158 THR B 175 1 18 HELIX 39 39 LYS B 176 VAL B 178 5 3 HELIX 40 40 CYS G 17 ILE G 21 5 5 HELIX 41 41 PRO G 28 ILE G 32 5 5 HELIX 42 42 THR G 33 SER G 39 1 7 HELIX 43 43 SER G 50 GLN G 63 1 14 HELIX 44 44 ARG G 66 GLU G 78 1 13 HELIX 45 45 PRO G 83 ARG G 95 1 13 HELIX 46 46 SER G 100 THR G 114 1 15 HELIX 47 47 ALA G 117 ARG G 134 1 18 HELIX 48 48 SER L 4 GLN L 12 1 9 HELIX 49 49 ARG L 13 ASP L 18 5 6 HELIX 50 50 TRP L 24 GLY L 28 5 5 HELIX 51 51 ASP L 58 PHE L 60 5 3 HELIX 52 52 ASP L 61 ALA L 71 1 11 HELIX 53 53 ARG L 76 MET L 81 1 6 HELIX 54 54 GLU L 84 ASP L 94 1 11 HELIX 55 55 SER L 98 THR L 107 1 10 HELIX 56 56 THR L 110 ALA L 119 1 10 HELIX 57 57 ASN L 122 ARG L 134 1 13 HELIX 58 58 ASN L 151 GLY L 166 1 16 HELIX 59 59 ILE L 176 ARG L 178 5 3 HELIX 60 60 TYR L 179 ARG L 195 1 17 HELIX 61 61 GLU L 205 ARG L 215 1 11 HELIX 62 62 THR L 229 GLY L 236 1 8 HELIX 63 63 THR L 239 SER L 252 1 14 HELIX 64 64 GLY L 264 MET L 269 1 6 HELIX 65 65 SER L 276 GLY L 292 1 17 HELIX 66 66 ALA L 300 SER L 302 5 3 HELIX 67 67 CYS L 303 GLY L 308 1 6 HELIX 68 68 SER L 312 LEU L 327 1 16 HELIX 69 69 SER L 342 LEU L 355 1 14 HELIX 70 70 PRO L 369 ASN L 373 5 5 HELIX 71 71 ASP L 381 GLU L 383 5 3 HELIX 72 72 ASP L 384 MET L 396 1 13 HELIX 73 73 THR L 405 LEU L 427 1 23 HELIX 74 74 ALA L 433 ALA L 443 1 11 HELIX 75 75 GLY L 445 MET L 449 5 5 HELIX 76 76 ASN L 453 ARG L 467 1 15 HELIX 77 77 THR L 470 ARG L 480 1 11 HELIX 78 78 PHE L 483 GLY L 500 1 18 HELIX 79 79 ASP L 501 GLN L 504 5 4 HELIX 80 80 SER L 535 ASN L 544 1 10 HELIX 81 81 PRO E 50 GLU E 65 1 16 HELIX 82 82 ASP E 79 ASN E 89 1 11 HELIX 83 83 GLN E 123 LEU E 127 5 5 HELIX 84 84 THR E 128 ARG E 144 1 17 HELIX 85 85 MET E 158 HIS E 177 1 20 HELIX 86 86 PRO M 28 ILE M 32 5 5 HELIX 87 87 THR M 33 SER M 39 1 7 HELIX 88 88 SER M 50 MET M 64 1 15 HELIX 89 89 ARG M 66 GLU M 78 1 13 HELIX 90 90 PRO M 83 ARG M 95 1 13 HELIX 91 91 SER M 100 THR M 114 1 15 HELIX 92 92 ALA M 117 ARG M 134 1 18 SHEET 1 A 3 VAL A 42 ASP A 45 0 SHEET 2 A 3 LEU A 48 LEU A 52 -1 O VAL A 50 N LYS A 43 SHEET 3 A 3 LYS A 55 ARG A 56 -1 O LYS A 55 N LEU A 52 SHEET 1 B 4 LEU A 199 CYS A 202 0 SHEET 2 B 4 GLU A 169 THR A 172 1 N GLN A 170 O LEU A 199 SHEET 3 B 4 SER A 140 HIS A 144 1 N CYS A 143 O GLU A 171 SHEET 4 B 4 PHE A 360 SER A 366 1 O TYR A 365 N HIS A 144 SHEET 1 C 4 TYR A 220 SER A 225 0 SHEET 2 C 4 LYS A 256 THR A 260 1 O ARG A 258 N ALA A 221 SHEET 3 C 4 GLY A 295 GLN A 297 1 O GLN A 297 N TYR A 259 SHEET 4 C 4 GLU A 330 ALA A 332 1 O GLU A 330 N LEU A 296 SHEET 1 D 2 ILE A 508 LEU A 509 0 SHEET 2 D 2 VAL A 515 VAL A 516 -1 O VAL A 516 N ILE A 508 SHEET 1 E 7 LYS B 14 GLU B 17 0 SHEET 2 E 7 VAL B 185 ASP B 190 -1 O HIS B 188 N ARG B 16 SHEET 3 E 7 HIS B 68 ARG B 73 -1 N ARG B 73 O VAL B 185 SHEET 4 E 7 GLU B 29 VAL B 34 1 N ILE B 32 O VAL B 72 SHEET 5 E 7 ILE B 95 ILE B 99 1 O ILE B 97 N GLY B 33 SHEET 6 E 7 THR B 105 GLN B 109 -1 O VAL B 106 N GLY B 98 SHEET 7 E 7 GLU B 119 PHE B 121 -1 O PHE B 121 N THR B 105 SHEET 1 F 3 VAL L 42 ASP L 45 0 SHEET 2 F 3 LEU L 48 LEU L 52 -1 O VAL L 50 N LYS L 43 SHEET 3 F 3 LYS L 55 ARG L 56 -1 O LYS L 55 N LEU L 52 SHEET 1 G 4 LEU L 199 CYS L 202 0 SHEET 2 G 4 GLU L 169 THR L 172 1 N GLN L 170 O LEU L 199 SHEET 3 G 4 SER L 140 HIS L 144 1 N CYS L 143 O GLU L 171 SHEET 4 G 4 PHE L 360 SER L 366 1 O TYR L 365 N HIS L 144 SHEET 1 H 4 TYR L 220 SER L 225 0 SHEET 2 H 4 LYS L 256 THR L 260 1 O ARG L 258 N ALA L 221 SHEET 3 H 4 GLY L 295 GLN L 297 1 O GLY L 295 N TYR L 259 SHEET 4 H 4 GLU L 330 ALA L 332 1 O GLU L 330 N LEU L 296 SHEET 1 I 2 ILE L 508 LEU L 509 0 SHEET 2 I 2 VAL L 515 VAL L 516 -1 O VAL L 516 N ILE L 508 SHEET 1 J 7 THR E 12 VAL E 20 0 SHEET 2 J 7 VAL E 185 VAL E 192 -1 O HIS E 188 N ARG E 16 SHEET 3 J 7 HIS E 68 ARG E 73 -1 N ARG E 73 O VAL E 185 SHEET 4 J 7 GLU E 29 VAL E 34 1 N ILE E 32 O VAL E 72 SHEET 5 J 7 ILE E 95 ILE E 99 1 O ILE E 97 N GLY E 33 SHEET 6 J 7 THR E 105 GLN E 109 -1 O VAL E 106 N GLY E 98 SHEET 7 J 7 GLU E 119 PHE E 121 -1 O GLU E 119 N ILE E 107 LINK OE1 GLN A 142 K K A1001 1555 1555 2.75 LINK OE1 GLU A 171 K K A1001 1555 1555 3.26 LINK OE2 GLU A 171 K K A1001 1555 1555 2.59 LINK OE2 GLU A 222 K K A1001 1555 1555 2.36 LINK OE1 GLN A 297 K K A1001 1555 1555 2.51 LINK O SER A 363 K K A1001 1555 1555 2.31 LINK K K A1001 O HOH A1006 1555 1555 2.81 LINK OE1 GLN L 142 K K L1002 1555 1555 2.81 LINK OE2 GLU L 171 K K L1002 1555 1555 2.32 LINK OE1 GLU L 222 K K L1002 1555 1555 2.45 LINK OE1 GLN L 297 K K L1002 1555 1555 2.44 LINK O SER L 363 K K L1002 1555 1555 2.30 LINK K K L1002 O HOH L1006 1555 1555 2.86 CISPEP 1 TYR G 11 PRO G 12 0 -0.19 SITE 1 AC1 6 GLN A 142 GLU A 171 GLU A 222 GLN A 297 SITE 2 AC1 6 SER A 363 HOH A1006 SITE 1 AC2 6 GLN L 142 GLU L 171 GLU L 222 GLN L 297 SITE 2 AC2 6 SER L 363 HOH L1006 SITE 1 AC3 25 THR A 173 VAL A 174 GLY A 175 SER A 203 SITE 2 AC3 25 GLU A 206 THR A 223 ASP A 235 LEU A 268 SITE 3 AC3 25 MET A 269 GLN A 337 MET A 374 PHE A 375 SITE 4 AC3 25 ASP B 79 SER B 81 LYS B 102 THR B 104 SITE 5 AC3 25 LEU B 115 ASN B 117 LEU B 120 SER B 122 SITE 6 AC3 25 GLN B 123 ALA B 124 ARG B 160 PHE B 163 SITE 7 AC3 25 MET B 164 SITE 1 AC4 28 ASP E 79 SER E 81 LYS E 102 THR E 104 SITE 2 AC4 28 VAL E 106 LEU E 115 ASN E 117 LEU E 120 SITE 3 AC4 28 SER E 122 GLN E 123 ALA E 124 ARG E 160 SITE 4 AC4 28 PHE E 163 HOH E 607 HOH E 610 THR L 173 SITE 5 AC4 28 SER L 203 GLU L 206 THR L 223 ASP L 235 SITE 6 AC4 28 LEU L 268 MET L 269 SER L 302 GLN L 337 SITE 7 AC4 28 MET L 374 PHE L 375 ALA L 376 HOH L1050 CRYST1 93.700 110.070 114.690 90.00 107.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010672 0.000000 0.003394 0.00000 SCALE2 0.000000 0.009085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009149 0.00000