HEADER VIRAL PROTEIN 05-SEP-02 1MN8 TITLE STRUCTURE OF MOLONEY MURINE LEUKAEMIA VIRUS MATRIX PROTEIN CAVEAT 1MN8 CHIRALITY ERRORS IN CHAINS A, B, AND D. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE PROTEIN P15; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: M-MULV C-TERMINALLY TRUNCATED; COMPND 5 SYNONYM: M-MULV MATRIX PROTEIN P15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS; SOURCE 3 ORGANISM_TAXID: 11801; SOURCE 4 GENE: P15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (D3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS HELICAL BUNDLE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.RIFFEL,K.HARLOS,O.IOURIN,Z.RAO,A.KINGSMAN,D.STUART,E.FRY REVDAT 3 14-FEB-24 1MN8 1 SEQADV REVDAT 2 24-FEB-09 1MN8 1 VERSN REVDAT 1 14-JAN-03 1MN8 0 JRNL AUTH N.RIFFEL,K.HARLOS,O.IOURIN,Z.RAO,A.KINGSMAN,D.STUART,E.FRY JRNL TITL ATOMIC RESOLUTION STRUCTURE OF MOLONEY MURINE LEUKAEMIA JRNL TITL 2 VIRUS MATRIX PROTEIN AND ITS RELATIONSHIP TO OTHER JRNL TITL 3 RETROVIRAL MATRIX PROTEINS. JRNL REF STRUCTURE V. 10 1627 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12467570 JRNL DOI 10.1016/S0969-2126(02)00896-1 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.133 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 141625 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 569 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 ANGLE DISTANCES (A) : 2.500 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; SRS REMARK 200 BEAMLINE : ID14-4; PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9777; 0.978 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA PH 7.5, 1.4M SODIUM REMARK 280 CITRATE, 100MM NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 98 REMARK 465 PRO A 99 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 99 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 GLN C 3 REMARK 465 THR C 4 REMARK 465 PRO C 99 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 PRO D 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG C 58 O HOH C 2120 0.43 REMARK 500 NH2 ARG C 58 O HOH C 2173 0.74 REMARK 500 CZ ARG C 58 O HOH C 2120 0.91 REMARK 500 CG2 THR A 4 O HOH A 2282 0.93 REMARK 500 OD2 ASP D 53 O HOH D 2150 1.13 REMARK 500 OD1 ASP A 53 O HOH A 1943 1.29 REMARK 500 CZ ARG C 58 O HOH C 2173 1.30 REMARK 500 O HOH B 2046 O HOH B 2297 1.35 REMARK 500 NZ LYS C 65 OE2 GLU C 87 1.44 REMARK 500 O VAL D 97 O LYS D 98 1.66 REMARK 500 CD ARG C 58 O HOH C 2120 1.68 REMARK 500 O PRO C 95 CB LYS C 98 1.69 REMARK 500 OD2 ASP B 59 O HOH B 2222 1.72 REMARK 500 O HOH C 2120 O HOH C 2173 1.72 REMARK 500 NZ LYS A 17 O HOH A 2081 1.73 REMARK 500 CB THR A 4 O HOH A 2282 1.73 REMARK 500 O HOH B 2051 O HOH B 2112 1.74 REMARK 500 N GLN A 3 N THR A 4 1.75 REMARK 500 NZ LYS C 65 O HOH C 1907 1.76 REMARK 500 NZ LYS A 17 OE1 GLU A 20 1.81 REMARK 500 O HOH B 2030 O HOH B 2222 1.81 REMARK 500 NZ LYS A 17 CD GLU A 20 1.83 REMARK 500 CG ASP B 59 O HOH B 2222 1.85 REMARK 500 NH2 ARG C 58 O HOH C 2120 1.89 REMARK 500 CG2 THR B 6 OG SER B 10 1.89 REMARK 500 O HOH A 2071 O HOH A 2175 1.89 REMARK 500 O HOH B 2178 O HOH B 2246 1.99 REMARK 500 OD1 ASP D 53 O HOH D 2254 2.00 REMARK 500 O HOH D 2160 O HOH D 2239 2.00 REMARK 500 OG SER D 70 O HOH D 2469 2.01 REMARK 500 NH1 ARG C 58 O HOH C 2120 2.03 REMARK 500 N LYS C 98 O HOH C 2462 2.09 REMARK 500 NE ARG C 58 O HOH C 2173 2.11 REMARK 500 O HOH A 2335 O HOH B 2024 2.14 REMARK 500 O HOH D 2180 O HOH D 2353 2.16 REMARK 500 O HOH A 2012 O HOH B 2093 2.16 REMARK 500 CB GLN A 3 NE ARG D 52 2.16 REMARK 500 ND2 ASN A 47 O HOH A 2293 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2052 O HOH A 2290 1455 0.69 REMARK 500 O HOH B 2198 O HOH C 2142 1545 1.57 REMARK 500 O HOH B 2112 O HOH C 2142 1545 1.78 REMARK 500 CB VAL C 5 O HOH A 2280 1556 1.88 REMARK 500 O HOH A 2340 O HOH D 2180 1645 2.11 REMARK 500 O HOH A 2281 O HOH A 2290 1455 2.15 REMARK 500 O HOH A 2257 O HOH D 2199 1645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 3 N GLN A 3 CA 1.082 REMARK 500 GLN A 3 CA GLN A 3 CB 0.594 REMARK 500 GLN A 3 CB GLN A 3 CG 0.746 REMARK 500 GLN A 3 CG GLN A 3 CD -0.401 REMARK 500 GLN A 3 CD GLN A 3 OE1 0.758 REMARK 500 GLN A 3 CD GLN A 3 NE2 0.299 REMARK 500 GLN A 3 CA GLN A 3 C 0.354 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 3 CB - CA - C ANGL. DEV. = -55.1 DEGREES REMARK 500 GLN A 3 N - CA - CB ANGL. DEV. = -96.3 DEGREES REMARK 500 GLN A 3 CA - CB - CG ANGL. DEV. = -44.0 DEGREES REMARK 500 GLN A 3 OE1 - CD - NE2 ANGL. DEV. = -40.0 DEGREES REMARK 500 GLN A 3 CG - CD - NE2 ANGL. DEV. = 32.2 DEGREES REMARK 500 GLN A 3 N - CA - C ANGL. DEV. = -69.8 DEGREES REMARK 500 GLN A 3 CA - C - N ANGL. DEV. = -20.0 DEGREES REMARK 500 GLN A 3 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS A 17 CG - CD - CE ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 52 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG A 52 NH1 - CZ - NH2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 PRO A 95 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 VAL A 97 C - N - CA ANGL. DEV. = 19.9 DEGREES REMARK 500 VAL A 97 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 34 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 THR B 45 N - CA - CB ANGL. DEV. = -16.9 DEGREES REMARK 500 THR B 45 OG1 - CB - CG2 ANGL. DEV. = 16.9 DEGREES REMARK 500 THR B 45 OG1 - CB - CG2 ANGL. DEV. = 14.5 DEGREES REMARK 500 ASP B 59 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE B 69 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 PHE B 91 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 VAL C 28 CG1 - CB - CG2 ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP C 29 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 GLU C 42 OE1 - CD - OE2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG C 58 CD - NE - CZ ANGL. DEV. = 27.0 DEGREES REMARK 500 ARG C 58 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP C 92 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LYS C 98 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU D 9 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG D 21 CD - NE - CZ ANGL. DEV. = 47.3 DEGREES REMARK 500 ARG D 21 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG D 34 CD - NE - CZ ANGL. DEV. = 21.6 DEGREES REMARK 500 PHE D 46 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 PHE D 46 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG D 52 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 52 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 LYS D 98 C - N - CA ANGL. DEV. = -16.6 DEGREES REMARK 500 LYS D 98 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 143.09 136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 96 VAL A 97 149.30 REMARK 500 VAL C 97 LYS C 98 53.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 3 -19.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 1MN8 A 1 99 UNP P03332 GAG_MLVMO 1 99 DBREF 1MN8 B 1 99 UNP P03332 GAG_MLVMO 1 99 DBREF 1MN8 C 1 99 UNP P03332 GAG_MLVMO 1 99 DBREF 1MN8 D 1 99 UNP P03332 GAG_MLVMO 1 99 SEQADV 1MN8 ALA A 0 UNP P03332 CLONING ARTIFACT SEQADV 1MN8 ALA B 0 UNP P03332 CLONING ARTIFACT SEQADV 1MN8 ALA C 0 UNP P03332 CLONING ARTIFACT SEQADV 1MN8 ALA D 0 UNP P03332 CLONING ARTIFACT SEQRES 1 A 100 ALA MET GLY GLN THR VAL THR THR PRO LEU SER LEU THR SEQRES 2 A 100 LEU GLY HIS TRP LYS ASP VAL GLU ARG ILE ALA HIS ASN SEQRES 3 A 100 GLN SER VAL ASP VAL LYS LYS ARG ARG TRP VAL THR PHE SEQRES 4 A 100 CYS SER ALA GLU TRP PRO THR PHE ASN VAL GLY TRP PRO SEQRES 5 A 100 ARG ASP GLY THR PHE ASN ARG ASP LEU ILE THR GLN VAL SEQRES 6 A 100 LYS ILE LYS VAL PHE SER PRO GLY PRO HIS GLY HIS PRO SEQRES 7 A 100 ASP GLN VAL PRO TYR ILE VAL THR TRP GLU ALA LEU ALA SEQRES 8 A 100 PHE ASP PRO PRO PRO TRP VAL LYS PRO SEQRES 1 B 100 ALA MET GLY GLN THR VAL THR THR PRO LEU SER LEU THR SEQRES 2 B 100 LEU GLY HIS TRP LYS ASP VAL GLU ARG ILE ALA HIS ASN SEQRES 3 B 100 GLN SER VAL ASP VAL LYS LYS ARG ARG TRP VAL THR PHE SEQRES 4 B 100 CYS SER ALA GLU TRP PRO THR PHE ASN VAL GLY TRP PRO SEQRES 5 B 100 ARG ASP GLY THR PHE ASN ARG ASP LEU ILE THR GLN VAL SEQRES 6 B 100 LYS ILE LYS VAL PHE SER PRO GLY PRO HIS GLY HIS PRO SEQRES 7 B 100 ASP GLN VAL PRO TYR ILE VAL THR TRP GLU ALA LEU ALA SEQRES 8 B 100 PHE ASP PRO PRO PRO TRP VAL LYS PRO SEQRES 1 C 100 ALA MET GLY GLN THR VAL THR THR PRO LEU SER LEU THR SEQRES 2 C 100 LEU GLY HIS TRP LYS ASP VAL GLU ARG ILE ALA HIS ASN SEQRES 3 C 100 GLN SER VAL ASP VAL LYS LYS ARG ARG TRP VAL THR PHE SEQRES 4 C 100 CYS SER ALA GLU TRP PRO THR PHE ASN VAL GLY TRP PRO SEQRES 5 C 100 ARG ASP GLY THR PHE ASN ARG ASP LEU ILE THR GLN VAL SEQRES 6 C 100 LYS ILE LYS VAL PHE SER PRO GLY PRO HIS GLY HIS PRO SEQRES 7 C 100 ASP GLN VAL PRO TYR ILE VAL THR TRP GLU ALA LEU ALA SEQRES 8 C 100 PHE ASP PRO PRO PRO TRP VAL LYS PRO SEQRES 1 D 100 ALA MET GLY GLN THR VAL THR THR PRO LEU SER LEU THR SEQRES 2 D 100 LEU GLY HIS TRP LYS ASP VAL GLU ARG ILE ALA HIS ASN SEQRES 3 D 100 GLN SER VAL ASP VAL LYS LYS ARG ARG TRP VAL THR PHE SEQRES 4 D 100 CYS SER ALA GLU TRP PRO THR PHE ASN VAL GLY TRP PRO SEQRES 5 D 100 ARG ASP GLY THR PHE ASN ARG ASP LEU ILE THR GLN VAL SEQRES 6 D 100 LYS ILE LYS VAL PHE SER PRO GLY PRO HIS GLY HIS PRO SEQRES 7 D 100 ASP GLN VAL PRO TYR ILE VAL THR TRP GLU ALA LEU ALA SEQRES 8 D 100 PHE ASP PRO PRO PRO TRP VAL LYS PRO FORMUL 5 HOH *569(H2 O) HELIX 1 1 THR A 7 HIS A 15 1 9 HELIX 2 2 HIS A 15 GLN A 26 1 12 HELIX 3 3 LYS A 31 ALA A 41 1 11 HELIX 4 4 GLU A 42 ASN A 47 5 6 HELIX 5 5 ASN A 57 PHE A 69 1 13 HELIX 6 6 HIS A 76 ASP A 78 5 3 HELIX 7 7 GLN A 79 ASP A 92 1 14 HELIX 8 8 THR B 7 HIS B 15 1 9 HELIX 9 9 HIS B 15 GLN B 26 1 12 HELIX 10 10 LYS B 31 ALA B 41 1 11 HELIX 11 11 GLU B 42 ASN B 47 5 6 HELIX 12 12 ASN B 57 PHE B 69 1 13 HELIX 13 13 HIS B 76 ASP B 78 5 3 HELIX 14 14 GLN B 79 ASP B 92 1 14 HELIX 15 15 THR C 7 HIS C 15 1 9 HELIX 16 16 HIS C 15 GLN C 26 1 12 HELIX 17 17 LYS C 31 ALA C 41 1 11 HELIX 18 18 GLU C 42 ASN C 47 5 6 HELIX 19 19 ASN C 57 PHE C 69 1 13 HELIX 20 20 PRO C 71 GLY C 75 5 5 HELIX 21 21 HIS C 76 ASP C 78 5 3 HELIX 22 22 GLN C 79 ASP C 92 1 14 HELIX 23 23 THR D 7 HIS D 15 1 9 HELIX 24 24 HIS D 15 GLN D 26 1 12 HELIX 25 25 LYS D 31 ALA D 41 1 11 HELIX 26 26 GLU D 42 ASN D 47 5 6 HELIX 27 27 ASN D 57 PHE D 69 1 13 HELIX 28 28 PRO D 71 GLY D 75 5 5 HELIX 29 29 HIS D 76 ASP D 78 5 3 HELIX 30 30 GLN D 79 ASP D 92 1 14 CISPEP 1 GLY A 72 PRO A 73 0 -1.53 CISPEP 2 GLY B 72 PRO B 73 0 -3.69 CRYST1 33.800 49.500 50.800 71.90 81.90 80.00 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029586 -0.005217 -0.002803 0.00000 SCALE2 0.000000 0.020514 -0.006299 0.00000 SCALE3 0.000000 0.000000 0.020800 0.00000