HEADER TRANSCRIPTION/DNA 05-SEP-02 1MNN TITLE STRUCTURE OF THE SPORULATION SPECIFIC TRANSCRIPTION FACTOR NDT80 BOUND TITLE 2 TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3'; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NDT80 PROTEIN; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: DNA-BINDING DOMAIN (RESIDUES 1-340); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: NDT80; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS IG FOLD, PROTEIN_DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.LAMOUREUX,D.STUART,R.TSANG,C.WU,J.N.GLOVER REVDAT 5 14-FEB-24 1MNN 1 REMARK REVDAT 4 27-MAR-13 1MNN 1 REMARK REVDAT 3 13-JUL-11 1MNN 1 VERSN REVDAT 2 24-FEB-09 1MNN 1 VERSN REVDAT 1 20-NOV-02 1MNN 0 JRNL AUTH J.S.LAMOUREUX,D.STUART,R.TSANG,C.WU,J.N.GLOVER JRNL TITL STRUCTURE OF THE SPORULATION-SPECIFIC TRANSCRIPTION FACTOR JRNL TITL 2 NDT80 BOUND TO DNA JRNL REF EMBO J. V. 21 5721 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12411490 JRNL DOI 10.1093/EMBOJ/CDF572 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 83611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 317 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2330 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3078 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2487 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.515 ; 2.194 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5851 ; 0.948 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 4.713 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;16.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2934 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 510 ; 0.216 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2499 ; 0.210 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 337 ; 0.136 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.106 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.276 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.258 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.215 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1465 ; 1.132 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2406 ; 2.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1608 ; 2.229 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1877 ; 3.359 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8542 16.6956 64.2594 REMARK 3 T TENSOR REMARK 3 T11: 0.0594 T22: 0.0526 REMARK 3 T33: 0.0607 T12: 0.0188 REMARK 3 T13: 0.0059 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4854 L22: 0.3974 REMARK 3 L33: 0.4142 L12: -0.2407 REMARK 3 L13: -0.2007 L23: 0.4231 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0321 S13: 0.0254 REMARK 3 S21: 0.0330 S22: 0.0009 S23: -0.0062 REMARK 3 S31: 0.0117 S32: 0.0411 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 14 REMARK 3 RESIDUE RANGE : C 1 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1762 19.4550 46.6611 REMARK 3 T TENSOR REMARK 3 T11: 0.0360 T22: 0.2137 REMARK 3 T33: 0.0666 T12: -0.0481 REMARK 3 T13: 0.0363 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.9401 L22: 0.9521 REMARK 3 L33: 0.9652 L12: -0.3372 REMARK 3 L13: -0.0429 L23: -0.7858 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.2248 S13: 0.0647 REMARK 3 S21: -0.0203 S22: 0.0134 S23: -0.1423 REMARK 3 S31: -0.1466 S32: 0.4348 S33: 0.0431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1MNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98008 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88384 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, CALCIUM CHLORIDE, SODIUM REMARK 280 CHLORIDE, BIS-TRIS PROPANE, DTT, SPERMINE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.76100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.76100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.07150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.44350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.07150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.44350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.76100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.07150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.44350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.76100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.07150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.44350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 THR A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 LYS A 18 REMARK 465 TYR A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 GLU A 22 REMARK 465 LEU A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 GLU A 26 REMARK 465 GLN A 27 REMARK 465 GLU A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 PRO A 32 REMARK 465 GLU A 140 REMARK 465 ASP A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 VAL A 144 REMARK 465 GLU A 145 REMARK 465 THR A 287 REMARK 465 PHE A 288 REMARK 465 HIS A 289 REMARK 465 GLY A 290 REMARK 465 GLU A 291 REMARK 465 ASN A 292 REMARK 465 PRO A 293 REMARK 465 ARG A 336 REMARK 465 ILE A 337 REMARK 465 THR A 338 REMARK 465 VAL A 339 REMARK 465 ARG A 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 286 CG OD1 OD2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 88 N ALA A 123 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 14 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 9 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 75 -111.38 -117.95 REMARK 500 ASP A 103 62.66 39.22 REMARK 500 ARG A 147 -71.07 -110.70 REMARK 500 ARG A 177 -117.61 50.57 REMARK 500 ASN A 206 49.99 -143.80 REMARK 500 GLN A 268 -6.37 84.83 REMARK 500 ALA A 301 82.49 -67.34 REMARK 500 LEU A 302 -177.54 -49.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MN4 RELATED DB: PDB REMARK 900 CORE OF DNA-BINDING DOMAIN REMARK 900 RELATED ID: 1M7U RELATED DB: PDB REMARK 900 1M7U CONTAINS THE SAME PROTEIN REMARK 900 RELATED ID: 1M6U RELATED DB: PDB REMARK 900 1M6U CONTAINS THE SAME PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE DESCREPANCIES EXIST AND ARE ALLELIC VARIATION AS REMARK 999 THIS GENE WAS CLONED FROM A DIFFERENT STRAIN OF YEAST REMARK 999 THAN THE DEPOSITED SEQUENCE DBREF 1MNN A 1 340 UNP P38830 NDT80_YEAST 1 340 DBREF 1MNN B 1 14 PDB 1MNN 1MNN 1 14 DBREF 1MNN C 1 14 PDB 1MNN 1MNN 1 14 SEQADV 1MNN VAL A 8 UNP P38830 ASP 8 SEE REMARK 999 SEQADV 1MNN GLY A 146 UNP P38830 SER 146 SEE REMARK 999 SEQADV 1MNN THR A 200 UNP P38830 ILE 200 SEE REMARK 999 SEQRES 1 B 14 DT DG DC DG DA DC DA DC DA DA DA DA DA SEQRES 2 B 14 DC SEQRES 1 C 14 DA DG DT DT DT DT DT DG DT DG DT DC DG SEQRES 2 C 14 DC SEQRES 1 A 340 MET ASN GLU MET GLU ASN THR VAL PRO VAL LEU GLN ASP SEQRES 2 A 340 ASP LEU VAL SER LYS TYR GLU ARG GLU LEU SER THR GLU SEQRES 3 A 340 GLN GLU GLU ASP THR PRO VAL ILE LEU THR GLN LEU ASN SEQRES 4 A 340 GLU ASP GLY THR THR SER ASN TYR PHE ASP LYS ARG LYS SEQRES 5 A 340 LEU LYS ILE ALA PRO ARG SER THR LEU GLN PHE LYS VAL SEQRES 6 A 340 GLY PRO PRO PHE GLU LEU VAL ARG ASP TYR CYS PRO VAL SEQRES 7 A 340 VAL GLU SER HIS THR GLY ARG THR LEU ASP LEU ARG ILE SEQRES 8 A 340 ILE PRO ARG ILE ASP ARG GLY PHE ASP HIS ILE ASP GLU SEQRES 9 A 340 GLU TRP VAL GLY TYR LYS ARG ASN TYR PHE THR LEU VAL SEQRES 10 A 340 SER THR PHE GLU THR ALA ASN CYS ASP LEU ASP THR PHE SEQRES 11 A 340 LEU LYS SER SER PHE ASP LEU LEU VAL GLU ASP SER SER SEQRES 12 A 340 VAL GLU GLY ARG LEU ARG VAL GLN TYR PHE ALA ILE LYS SEQRES 13 A 340 ILE LYS ALA LYS ASN ASP ASP ASP ASP THR GLU ILE ASN SEQRES 14 A 340 LEU VAL GLN HIS THR ALA LYS ARG ASP LYS GLY PRO GLN SEQRES 15 A 340 PHE CYS PRO SER VAL CYS PRO LEU VAL PRO SER PRO LEU SEQRES 16 A 340 PRO LYS HIS GLN THR ILE ARG GLU ALA SER ASN VAL ARG SEQRES 17 A 340 ASN ILE THR LYS MET LYS LYS TYR ASP SER THR PHE TYR SEQRES 18 A 340 LEU HIS ARG ASP HIS VAL ASN TYR GLU GLU TYR GLY VAL SEQRES 19 A 340 ASP SER LEU LEU PHE SER TYR PRO GLU ASP SER ILE GLN SEQRES 20 A 340 LYS VAL ALA ARG TYR GLU ARG VAL GLN PHE ALA SER SER SEQRES 21 A 340 ILE SER VAL LYS LYS PRO SER GLN GLN ASN LYS HIS PHE SEQRES 22 A 340 SER LEU HIS VAL ILE LEU GLY ALA VAL VAL ASP PRO ASP SEQRES 23 A 340 THR PHE HIS GLY GLU ASN PRO GLY ILE PRO TYR ASP GLU SEQRES 24 A 340 LEU ALA LEU LYS ASN GLY SER LYS GLY MET PHE VAL TYR SEQRES 25 A 340 LEU GLN GLU MET LYS THR PRO PRO LEU ILE ILE ARG GLY SEQRES 26 A 340 ARG SER PRO SER ASN TYR ALA SER SER GLN ARG ILE THR SEQRES 27 A 340 VAL ARG FORMUL 4 HOH *342(H2 O) HELIX 1 1 SER A 59 PHE A 63 5 5 HELIX 2 2 ASP A 126 SER A 133 1 8 HELIX 3 3 LYS A 176 GLY A 180 5 5 HELIX 4 4 LYS A 197 ALA A 204 1 8 HELIX 5 5 ASN A 209 PHE A 220 1 12 HELIX 6 6 ASP A 225 VAL A 227 5 3 HELIX 7 7 ASN A 228 TYR A 232 5 5 HELIX 8 8 SER A 236 TYR A 241 5 6 HELIX 9 9 SER A 327 GLN A 335 5 9 SHEET 1 A 2 LEU A 35 LEU A 38 0 SHEET 2 A 2 THR A 44 TYR A 47 -1 N SER A 45 O GLN A 37 SHEET 1 B 9 GLU A 70 ASP A 74 0 SHEET 2 B 9 LYS A 307 LYS A 317 -1 O GLU A 315 N VAL A 72 SHEET 3 B 9 TYR A 297 ALA A 301 -1 SHEET 4 B 9 LYS A 307 LYS A 317 -1 O GLY A 308 N LEU A 300 SHEET 5 B 9 PHE A 273 VAL A 283 -1 N VAL A 277 O MET A 316 SHEET 6 B 9 TYR A 152 ASN A 161 -1 O TYR A 152 N VAL A 282 SHEET 7 B 9 CYS A 188 PRO A 189 -1 N CYS A 188 O ILE A 155 SHEET 8 B 9 TYR A 152 ASN A 161 -1 O ILE A 155 N CYS A 188 SHEET 9 B 9 GLU A 167 ILE A 168 -1 N ILE A 168 O ALA A 159 SHEET 1 C 3 VAL A 78 GLU A 80 0 SHEET 2 C 3 PHE A 135 LEU A 137 -1 O ASP A 136 N VAL A 79 SHEET 3 C 3 LEU A 148 ARG A 149 -1 O LEU A 148 N LEU A 137 SHEET 1 D 5 ARG A 90 ARG A 97 0 SHEET 2 D 5 PHE A 114 GLU A 121 -1 O THR A 115 N ASP A 96 SHEET 3 D 5 ALA A 250 PHE A 257 -1 N ALA A 250 O SER A 118 SHEET 4 D 5 LEU A 170 HIS A 173 -1 N VAL A 171 O GLN A 256 SHEET 5 D 5 GLN A 182 PHE A 183 -1 O PHE A 183 N GLN A 172 SHEET 1 E 3 ASP A 100 ILE A 102 0 SHEET 2 E 3 GLU A 105 TYR A 109 -1 O GLU A 105 N ILE A 102 SHEET 3 E 3 LEU A 321 ARG A 324 1 N ILE A 322 O TRP A 106 SHEET 1 F 2 TYR A 221 HIS A 223 0 SHEET 2 F 2 SER A 245 GLN A 247 -1 O ILE A 246 N LEU A 222 CRYST1 70.143 78.887 161.522 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006191 0.00000