HEADER HYDROLASE 08-SEP-02 1MO8 TITLE ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM/POTASSIUM-TRANSPORTING ATPASE ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 383-595; COMPND 5 SYNONYM: SODIUM PUMP, NA+/K+ ATPASE 1; COMPND 6 EC: 3.6.3.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS SIX-STRANDED, TWISTED BETA SHEET, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.HILGE,G.SIEGAL,G.W.VUISTER,P.GUENTERT,S.M.GLOOR,J.P.ABRAHAMS REVDAT 4 23-FEB-22 1MO8 1 REMARK SEQADV REVDAT 3 24-FEB-09 1MO8 1 VERSN REVDAT 2 02-DEC-03 1MO8 3 DBREF SEQADV ATOM REVDAT 1 10-JUN-03 1MO8 0 JRNL AUTH M.HILGE,G.SIEGAL,G.W.VUISTER,P.GUENTERT,S.M.GLOOR, JRNL AUTH 2 J.P.ABRAHAMS JRNL TITL ATP-INDUCED CONFORMATIONAL CHANGES OF THE NUCLEOTIDE-BINDING JRNL TITL 2 DOMAIN OF NA,K-ATPASE JRNL REF NAT.STRUCT.BIOL. V. 10 468 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12730684 JRNL DOI 10.1038/NSB924 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.0, OPALP 1.0 REMARK 3 AUTHORS : DELAGLIO, F. ET AL. (NMRPIPE), KORADI, R., REMARK 3 BILLETER, M., GUENTERT, P. (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MO8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 8.6 REMARK 210 IONIC STRENGTH : 20MM TRIS-HCL, 0.02% NAN3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ATPASE; ATP REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.11, CYANA 1.0.5 REMARK 210 METHOD USED : AUTOMATED NOESY CROSS PEAK REMARK 210 ASSIGNMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 STEREOSPECIFIC ASSIGNMENTS OF VALINE AND LEUCINE METHYL GROUPS REMARK 210 WERE OBTAINED BY ANALYSIS OF AN 1H,13C CT HSQC SPECTRUM REMARK 210 ON A 10% 13C-LABELLED SAMPLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 PHE A 555 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 7 TYR A 542 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 14 CYS A 584 CB - CA - C ANGL. DEV. = 7.5 DEGREES REMARK 500 15 ARG A 517 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 384 -161.03 48.31 REMARK 500 1 ALA A 389 -74.82 56.19 REMARK 500 1 PHE A 393 -25.01 -151.83 REMARK 500 1 GLN A 396 19.66 -152.92 REMARK 500 1 ILE A 397 -70.13 55.28 REMARK 500 1 HIS A 398 72.08 40.34 REMARK 500 1 GLU A 399 -130.85 53.86 REMARK 500 1 ALA A 400 20.89 120.03 REMARK 500 1 GLU A 404 -69.61 76.81 REMARK 500 1 THR A 414 9.90 55.52 REMARK 500 1 SER A 415 91.31 -48.35 REMARK 500 1 ALA A 416 -71.06 -120.38 REMARK 500 1 PHE A 433 35.37 -98.81 REMARK 500 1 GLN A 434 87.10 36.54 REMARK 500 1 ALA A 435 -122.27 58.80 REMARK 500 1 ASN A 436 -102.72 -119.07 REMARK 500 1 GLN A 437 134.91 -171.91 REMARK 500 1 ASN A 439 5.94 -162.10 REMARK 500 1 ALA A 446 -169.73 143.24 REMARK 500 1 ALA A 451 12.91 -64.41 REMARK 500 1 SER A 452 -87.84 -76.24 REMARK 500 1 ILE A 460 -64.26 -126.50 REMARK 500 1 CYS A 463 11.36 -168.29 REMARK 500 1 LYS A 476 64.46 72.86 REMARK 500 1 GLU A 479 66.13 -152.34 REMARK 500 1 ASN A 483 -97.55 69.11 REMARK 500 1 SER A 484 -10.96 -151.82 REMARK 500 1 LYS A 487 4.61 53.89 REMARK 500 1 ILE A 492 -83.44 -73.59 REMARK 500 1 HIS A 493 149.12 75.53 REMARK 500 1 ALA A 498 -177.38 64.28 REMARK 500 1 SER A 499 6.05 -61.94 REMARK 500 1 GLU A 550 93.44 -63.21 REMARK 500 1 ARG A 551 -52.23 -144.55 REMARK 500 1 PHE A 555 86.15 46.87 REMARK 500 1 ASP A 572 -171.26 62.50 REMARK 500 1 VAL A 576 -68.40 -19.53 REMARK 500 1 ASN A 577 -8.93 58.70 REMARK 500 1 VAL A 580 43.22 -146.36 REMARK 500 1 ASP A 581 -137.97 -122.65 REMARK 500 1 LEU A 583 -139.28 49.87 REMARK 500 1 VAL A 586 -61.97 56.54 REMARK 500 1 ASP A 593 -52.44 -143.35 REMARK 500 2 ALA A 389 -53.96 63.71 REMARK 500 2 PHE A 393 -47.66 -158.20 REMARK 500 2 ASP A 394 0.81 -67.83 REMARK 500 2 GLN A 396 10.51 -150.99 REMARK 500 2 ILE A 397 -73.64 63.51 REMARK 500 2 HIS A 398 -150.50 39.28 REMARK 500 2 ALA A 400 -7.69 -145.24 REMARK 500 REMARK 500 THIS ENTRY HAS 863 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 447 ALA A 448 1 142.21 REMARK 500 LYS A 487 TYR A 488 2 138.78 REMARK 500 SER A 499 GLU A 500 2 145.63 REMARK 500 GLN A 434 ALA A 435 3 149.03 REMARK 500 GLY A 546 GLY A 547 3 -142.67 REMARK 500 PRO A 561 ASP A 562 5 -146.25 REMARK 500 VAL A 580 ASP A 581 5 -149.47 REMARK 500 SER A 452 GLU A 453 6 -138.54 REMARK 500 LEU A 490 SER A 491 6 149.45 REMARK 500 PHE A 571 ASP A 572 6 -147.29 REMARK 500 GLY A 465 SER A 466 8 -145.89 REMARK 500 LYS A 487 TYR A 488 9 144.16 REMARK 500 ALA A 435 ASN A 436 10 147.68 REMARK 500 PHE A 482 ASN A 483 10 -149.65 REMARK 500 GLN A 383 ASN A 384 12 140.34 REMARK 500 GLU A 567 GLY A 568 12 149.02 REMARK 500 PHE A 571 ASP A 572 12 -134.53 REMARK 500 GLY A 549 GLU A 550 13 -142.89 REMARK 500 GLU A 567 GLY A 568 15 149.04 REMARK 500 CYS A 464 GLY A 465 16 -146.40 REMARK 500 ASN A 497 ALA A 498 16 -145.96 REMARK 500 GLN A 383 ASN A 384 17 142.66 REMARK 500 TRP A 418 PHE A 419 17 136.01 REMARK 500 SER A 519 SER A 520 17 149.96 REMARK 500 HIS A 493 LYS A 494 18 146.13 REMARK 500 GLU A 567 GLY A 568 18 148.53 REMARK 500 GLU A 575 VAL A 576 18 -145.54 REMARK 500 GLY A 449 ASP A 450 20 149.24 REMARK 500 LEU A 490 SER A 491 20 146.48 REMARK 500 PRO A 594 PRO A 595 20 145.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 474 0.12 SIDE CHAIN REMARK 500 1 ARG A 517 0.08 SIDE CHAIN REMARK 500 4 TYR A 474 0.09 SIDE CHAIN REMARK 500 4 TYR A 542 0.07 SIDE CHAIN REMARK 500 5 TYR A 474 0.12 SIDE CHAIN REMARK 500 6 ARG A 551 0.15 SIDE CHAIN REMARK 500 7 ARG A 471 0.09 SIDE CHAIN REMARK 500 7 ARG A 551 0.09 SIDE CHAIN REMARK 500 8 ARG A 471 0.08 SIDE CHAIN REMARK 500 9 TYR A 542 0.07 SIDE CHAIN REMARK 500 10 PHE A 482 0.07 SIDE CHAIN REMARK 500 10 ARG A 551 0.08 SIDE CHAIN REMARK 500 11 ARG A 445 0.15 SIDE CHAIN REMARK 500 12 TYR A 488 0.08 SIDE CHAIN REMARK 500 13 ARG A 471 0.08 SIDE CHAIN REMARK 500 14 ARG A 517 0.09 SIDE CHAIN REMARK 500 14 ARG A 551 0.09 SIDE CHAIN REMARK 500 16 TYR A 474 0.09 SIDE CHAIN REMARK 500 16 ARG A 513 0.11 SIDE CHAIN REMARK 500 16 ARG A 517 0.08 SIDE CHAIN REMARK 500 20 ARG A 551 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MO7 RELATED DB: PDB REMARK 900 ATPASE, PROTEIN ONLY DBREF 1MO8 A 383 595 UNP P06685 AT1A1_RAT 383 595 SEQADV 1MO8 PRO A 385 UNP P06685 ARG 385 CLONING ARTIFACT SEQRES 1 A 213 GLN ASN PRO MET THR VAL ALA HIS MET TRP PHE ASP ASN SEQRES 2 A 213 GLN ILE HIS GLU ALA ASP THR THR GLU ASN GLN SER GLY SEQRES 3 A 213 VAL SER PHE ASP LYS THR SER ALA THR TRP PHE ALA LEU SEQRES 4 A 213 SER ARG ILE ALA GLY LEU CYS ASN ARG ALA VAL PHE GLN SEQRES 5 A 213 ALA ASN GLN GLU ASN LEU PRO ILE LEU LYS ARG ALA VAL SEQRES 6 A 213 ALA GLY ASP ALA SER GLU SER ALA LEU LEU LYS CYS ILE SEQRES 7 A 213 GLU VAL CYS CYS GLY SER VAL MET GLU MET ARG GLU LYS SEQRES 8 A 213 TYR THR LYS ILE VAL GLU ILE PRO PHE ASN SER THR ASN SEQRES 9 A 213 LYS TYR GLN LEU SER ILE HIS LYS ASN PRO ASN ALA SER SEQRES 10 A 213 GLU PRO LYS HIS LEU LEU VAL MET LYS GLY ALA PRO GLU SEQRES 11 A 213 ARG ILE LEU ASP ARG CYS SER SER ILE LEU LEU HIS GLY SEQRES 12 A 213 LYS GLU GLN PRO LEU ASP GLU GLU LEU LYS ASP ALA PHE SEQRES 13 A 213 GLN ASN ALA TYR LEU GLU LEU GLY GLY LEU GLY GLU ARG SEQRES 14 A 213 VAL LEU GLY PHE CYS HIS LEU LEU LEU PRO ASP GLU GLN SEQRES 15 A 213 PHE PRO GLU GLY PHE GLN PHE ASP THR ASP GLU VAL ASN SEQRES 16 A 213 PHE PRO VAL ASP ASN LEU CYS PHE VAL GLY LEU ILE SER SEQRES 17 A 213 MET ILE ASP PRO PRO HET ATP A 900 43 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP C10 H16 N5 O13 P3 HELIX 1 1 ALA A 416 CYS A 428 1 13 HELIX 2 2 PRO A 441 ARG A 445 5 5 HELIX 3 3 SER A 454 CYS A 459 1 6 HELIX 4 4 SER A 466 TYR A 474 1 9 HELIX 5 5 ALA A 510 ASP A 516 1 7 HELIX 6 6 ASP A 531 GLY A 546 1 16 SHEET 1 A 3 TYR A 488 SER A 491 0 SHEET 2 A 3 LEU A 505 GLY A 509 -1 O VAL A 506 N SER A 491 SHEET 3 A 3 CYS A 556 LEU A 558 -1 O LEU A 558 N LEU A 505 SHEET 1 B 2 SER A 520 LEU A 523 0 SHEET 2 B 2 LYS A 526 PRO A 529 -1 O LYS A 526 N LEU A 523 SITE 1 AC1 7 SER A 452 PHE A 482 LYS A 487 LYS A 508 SITE 2 AC1 7 GLY A 509 ALA A 510 GLU A 550 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1