HEADER TRANSFERASE 16-SEP-02 1MQB TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: EPHA2 RECEPTOR TYROSINE KINASE, TYROSINE-PROTEIN KINASE COMPND 6 RECEPTOR ECK, EPITHELIAL CELL KINASE; COMPND 7 EC: 2.7.1.112; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TYROSINE PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NOWAKOWSKI,C.N.CRONIN,D.E.MCREE,M.W.KNUTH,C.NELSON,N.PAVLETICH, AUTHOR 2 J.ROGERS,B.C.SANG,D.N.SCHEIBE,R.V.SWANSON,D.A.THOMPSON REVDAT 3 14-FEB-24 1MQB 1 REMARK SEQADV REVDAT 2 24-FEB-09 1MQB 1 VERSN REVDAT 1 16-SEP-03 1MQB 0 JRNL AUTH J.NOWAKOWSKI,C.N.CRONIN,D.E.MCREE,M.W.KNUTH,C.NELSON, JRNL AUTH 2 N.PAVLETICH,J.ROGERS,B.C.SANG,D.N.SCHEIBE,R.V.SWANSON, JRNL AUTH 3 D.A.THOMPSON JRNL TITL STRUCTURES OF THE CANCER RELATED AURORA-A, FAK AND EPHA2 JRNL TITL 2 PROTEIN KINASES FROM NANOVOLUME CRYSTALLOGRAPHY JRNL REF STRUCTURE V. 10 1659 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12467573 JRNL DOI 10.1016/S0969-2126(02)00907-3 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 30548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4377 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4035 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5908 ; 1.695 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9388 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 8.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4689 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 884 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 987 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4885 ; 0.234 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2740 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2620 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4228 ; 1.523 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1757 ; 2.079 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1679 ; 3.579 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1MQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : SYNCHROTRON REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : 0.48500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JPA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHYLENE GLYCOL, PEG 10K, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 161.08200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.54100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.54100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.08200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 568 REMARK 465 SER A 569 REMARK 465 TYR A 570 REMARK 465 TYR A 571 REMARK 465 HIS A 572 REMARK 465 HIS A 573 REMARK 465 HIS A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 ASP A 578 REMARK 465 TYR A 579 REMARK 465 ASP A 580 REMARK 465 ILE A 581 REMARK 465 PRO A 582 REMARK 465 THR A 583 REMARK 465 THR A 584 REMARK 465 GLU A 585 REMARK 465 ASN A 586 REMARK 465 LEU A 587 REMARK 465 TYR A 588 REMARK 465 PHE A 589 REMARK 465 GLN A 590 REMARK 465 GLY A 591 REMARK 465 ALA A 592 REMARK 465 MET A 593 REMARK 465 GLY A 594 REMARK 465 SER A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 ASP A 888 REMARK 465 PRO A 889 REMARK 465 ARG A 890 REMARK 465 VAL A 891 REMARK 465 SER A 892 REMARK 465 ILE A 893 REMARK 465 ARG A 894 REMARK 465 LEU A 895 REMARK 465 PRO A 896 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 465 MET B 568 REMARK 465 SER B 569 REMARK 465 TYR B 570 REMARK 465 TYR B 571 REMARK 465 HIS B 572 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 465 HIS B 575 REMARK 465 HIS B 576 REMARK 465 HIS B 577 REMARK 465 ASP B 578 REMARK 465 TYR B 579 REMARK 465 ASP B 580 REMARK 465 ILE B 581 REMARK 465 PRO B 582 REMARK 465 THR B 583 REMARK 465 THR B 584 REMARK 465 GLU B 585 REMARK 465 ASN B 586 REMARK 465 LEU B 587 REMARK 465 TYR B 588 REMARK 465 PHE B 589 REMARK 465 GLN B 590 REMARK 465 GLY B 591 REMARK 465 ALA B 592 REMARK 465 MET B 593 REMARK 465 GLY B 594 REMARK 465 SER B 595 REMARK 465 ASP B 596 REMARK 465 PRO B 597 REMARK 465 ASN B 598 REMARK 465 GLN B 599 REMARK 465 ALA B 600 REMARK 465 VAL B 601 REMARK 465 SER B 635 REMARK 465 SER B 636 REMARK 465 GLY B 637 REMARK 465 LYS B 638 REMARK 465 GLU B 765 REMARK 465 ASP B 766 REMARK 465 ASP B 767 REMARK 465 PRO B 768 REMARK 465 GLU B 769 REMARK 465 ALA B 770 REMARK 465 THR B 771 REMARK 465 TYR B 772 REMARK 465 THR B 773 REMARK 465 THR B 774 REMARK 465 SER B 775 REMARK 465 GLY B 776 REMARK 465 GLY B 777 REMARK 465 LEU B 884 REMARK 465 ALA B 885 REMARK 465 ASP B 886 REMARK 465 PHE B 887 REMARK 465 ASP B 888 REMARK 465 PRO B 889 REMARK 465 ARG B 890 REMARK 465 VAL B 891 REMARK 465 SER B 892 REMARK 465 ILE B 893 REMARK 465 ARG B 894 REMARK 465 LEU B 895 REMARK 465 PRO B 896 REMARK 465 SER B 897 REMARK 465 THR B 898 REMARK 465 SER B 899 REMARK 465 GLY B 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 657 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO B 687 N - CA - CB ANGL. DEV. = -7.3 DEGREES REMARK 500 PRO B 687 N - CD - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP B 708 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 757 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 616 -50.09 -124.71 REMARK 500 PRO A 687 115.86 15.94 REMARK 500 ARG A 738 -17.66 77.42 REMARK 500 ASP A 757 74.63 57.53 REMARK 500 TRP A 819 -131.81 44.47 REMARK 500 ALA A 877 73.32 -118.11 REMARK 500 THR B 653 -28.95 -38.06 REMARK 500 GLU B 654 -7.11 81.39 REMARK 500 PHE B 660 -70.65 -66.42 REMARK 500 LYS B 684 -26.44 74.05 REMARK 500 PRO B 687 98.46 18.62 REMARK 500 ARG B 738 -16.04 79.19 REMARK 500 ASP B 757 81.33 51.28 REMARK 500 ARG B 792 32.80 72.20 REMARK 500 TRP B 819 -131.33 44.49 REMARK 500 SER B 880 -7.51 -59.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 686 PRO A 687 -96.21 REMARK 500 GLU B 654 LYS B 655 148.60 REMARK 500 LYS B 686 PRO B 687 -109.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MP8 RELATED DB: PDB REMARK 900 1MP8 IS THE CRYSTAL STRUCTURE OF FOCAL ADHESION KINASE (FAK) REMARK 900 RELATED ID: 1MQ4 RELATED DB: PDB REMARK 900 1MQ4 IS THE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN DBREF 1MQB A 596 900 UNP P29317 EPHA2_HUMAN 596 900 DBREF 1MQB B 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 1MQB MET A 568 UNP P29317 CLONING ARTIFACT SEQADV 1MQB SER A 569 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR A 570 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR A 571 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 572 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 573 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 574 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 575 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 576 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS A 577 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASP A 578 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR A 579 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASP A 580 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ILE A 581 UNP P29317 CLONING ARTIFACT SEQADV 1MQB PRO A 582 UNP P29317 CLONING ARTIFACT SEQADV 1MQB THR A 583 UNP P29317 CLONING ARTIFACT SEQADV 1MQB THR A 584 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLU A 585 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASN A 586 UNP P29317 CLONING ARTIFACT SEQADV 1MQB LEU A 587 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR A 588 UNP P29317 CLONING ARTIFACT SEQADV 1MQB PHE A 589 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLN A 590 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLY A 591 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ALA A 592 UNP P29317 CLONING ARTIFACT SEQADV 1MQB MET A 593 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLY A 594 UNP P29317 CLONING ARTIFACT SEQADV 1MQB SER A 595 UNP P29317 CLONING ARTIFACT SEQADV 1MQB MET B 568 UNP P29317 CLONING ARTIFACT SEQADV 1MQB SER B 569 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR B 570 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR B 571 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 572 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 573 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 574 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 575 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 576 UNP P29317 CLONING ARTIFACT SEQADV 1MQB HIS B 577 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASP B 578 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR B 579 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASP B 580 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ILE B 581 UNP P29317 CLONING ARTIFACT SEQADV 1MQB PRO B 582 UNP P29317 CLONING ARTIFACT SEQADV 1MQB THR B 583 UNP P29317 CLONING ARTIFACT SEQADV 1MQB THR B 584 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLU B 585 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ASN B 586 UNP P29317 CLONING ARTIFACT SEQADV 1MQB LEU B 587 UNP P29317 CLONING ARTIFACT SEQADV 1MQB TYR B 588 UNP P29317 CLONING ARTIFACT SEQADV 1MQB PHE B 589 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLN B 590 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLY B 591 UNP P29317 CLONING ARTIFACT SEQADV 1MQB ALA B 592 UNP P29317 CLONING ARTIFACT SEQADV 1MQB MET B 593 UNP P29317 CLONING ARTIFACT SEQADV 1MQB GLY B 594 UNP P29317 CLONING ARTIFACT SEQADV 1MQB SER B 595 UNP P29317 CLONING ARTIFACT SEQRES 1 A 333 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 333 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 333 GLY SER ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR SEQRES 4 A 333 GLU ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE SEQRES 5 A 333 GLY ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU SEQRES 6 A 333 LYS THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE SEQRES 7 A 333 LYS THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL SEQRES 8 A 333 ASP PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER SEQRES 9 A 333 HIS HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS SEQRES 10 A 333 TYR LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN SEQRES 11 A 333 GLY ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU SEQRES 12 A 333 PHE SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE SEQRES 13 A 333 ALA ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL SEQRES 14 A 333 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER SEQRES 15 A 333 ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG SEQRES 16 A 333 VAL LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER SEQRES 17 A 333 GLY GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA SEQRES 18 A 333 ILE SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SEQRES 19 A 333 SER PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY SEQRES 20 A 333 GLU ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET SEQRES 21 A 333 LYS ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET SEQRES 22 A 333 ASP CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS SEQRES 23 A 333 TRP GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP SEQRES 24 A 333 ILE VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SEQRES 25 A 333 SER LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER SEQRES 26 A 333 ILE ARG LEU PRO SER THR SER GLY SEQRES 1 B 333 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 333 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 333 GLY SER ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR SEQRES 4 B 333 GLU ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE SEQRES 5 B 333 GLY ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU SEQRES 6 B 333 LYS THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE SEQRES 7 B 333 LYS THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL SEQRES 8 B 333 ASP PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER SEQRES 9 B 333 HIS HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS SEQRES 10 B 333 TYR LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN SEQRES 11 B 333 GLY ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU SEQRES 12 B 333 PHE SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE SEQRES 13 B 333 ALA ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL SEQRES 14 B 333 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER SEQRES 15 B 333 ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG SEQRES 16 B 333 VAL LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER SEQRES 17 B 333 GLY GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA SEQRES 18 B 333 ILE SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SEQRES 19 B 333 SER PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY SEQRES 20 B 333 GLU ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET SEQRES 21 B 333 LYS ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET SEQRES 22 B 333 ASP CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS SEQRES 23 B 333 TRP GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP SEQRES 24 B 333 ILE VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SEQRES 25 B 333 SER LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER SEQRES 26 B 333 ILE ARG LEU PRO SER THR SER GLY HET ANP A1000 31 HET ANP B1001 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 HOH *66(H2 O) HELIX 1 1 THR A 653 GLN A 669 1 17 HELIX 2 2 LEU A 700 LYS A 707 1 8 HELIX 3 3 SER A 712 MET A 733 1 22 HELIX 4 4 ALA A 741 ARG A 743 5 3 HELIX 5 5 PRO A 780 THR A 784 5 5 HELIX 6 6 ALA A 785 TYR A 791 1 7 HELIX 7 7 THR A 795 THR A 812 1 18 HELIX 8 8 SER A 822 ASP A 832 1 11 HELIX 9 9 PRO A 843 TRP A 854 1 12 HELIX 10 10 LYS A 863 ALA A 877 1 15 HELIX 11 11 PRO A 878 THR A 883 5 6 HELIX 12 12 HIS B 609 SER B 611 5 3 HELIX 13 13 LYS B 655 GLY B 668 1 14 HELIX 14 14 ALA B 699 GLU B 706 1 8 HELIX 15 15 SER B 712 MET B 733 1 22 HELIX 16 16 ALA B 741 ARG B 743 5 3 HELIX 17 17 PRO B 780 THR B 784 5 5 HELIX 18 18 ALA B 785 SER B 790 1 6 HELIX 19 19 THR B 795 THR B 812 1 18 HELIX 20 20 SER B 822 ASP B 832 1 11 HELIX 21 21 PRO B 843 TRP B 854 1 12 HELIX 22 22 GLU B 857 ARG B 861 5 5 HELIX 23 23 LYS B 863 ALA B 877 1 15 HELIX 24 24 PRO B 878 LYS B 882 5 5 SHEET 1 A 5 VAL A 613 ALA A 621 0 SHEET 2 A 5 GLU A 626 LYS A 633 -1 O LYS A 629 N LYS A 617 SHEET 3 A 5 GLU A 640 LEU A 648 -1 O VAL A 641 N LEU A 632 SHEET 4 A 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 A 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 B 3 GLY A 698 ALA A 699 0 SHEET 2 B 3 ILE A 745 VAL A 747 -1 O VAL A 747 N GLY A 698 SHEET 3 B 3 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 SHEET 1 C 5 VAL B 613 ALA B 621 0 SHEET 2 C 5 GLU B 626 LEU B 632 -1 O LYS B 629 N LYS B 617 SHEET 3 C 5 VAL B 641 LEU B 648 -1 O VAL B 643 N GLY B 630 SHEET 4 C 5 MET B 688 GLU B 693 -1 O ILE B 690 N LYS B 646 SHEET 5 C 5 LEU B 678 ILE B 682 -1 N ILE B 682 O MET B 689 SHEET 1 D 2 TYR B 735 VAL B 736 0 SHEET 2 D 2 ARG B 762 VAL B 763 -1 O ARG B 762 N VAL B 736 SHEET 1 E 2 ILE B 745 VAL B 747 0 SHEET 2 E 2 CYS B 753 VAL B 755 -1 O LYS B 754 N LEU B 746 SITE 1 AC1 9 ALA A 621 GLY A 622 ALA A 644 LYS A 646 SITE 2 AC1 9 THR A 692 GLU A 693 TYR A 694 MET A 695 SITE 3 AC1 9 LEU A 746 SITE 1 AC2 12 HOH B 310 ILE B 619 GLY B 622 GLU B 623 SITE 2 AC2 12 ALA B 644 LYS B 646 THR B 692 GLU B 693 SITE 3 AC2 12 MET B 695 ASN B 744 LEU B 746 ASP B 757 CRYST1 72.127 72.127 241.623 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013864 0.008005 0.000000 0.00000 SCALE2 0.000000 0.016009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004139 0.00000