data_1MSE # _entry.id 1MSE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MSE pdb_00001mse 10.2210/pdb1mse/pdb WWPDB D_1000175144 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1MSF _pdbx_database_related.details 'ENSEMBLE OF 25 STRUCTURES' _pdbx_database_related.content_type ensemble # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MSE _pdbx_database_status.recvd_initial_deposition_date 1995-01-24 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ogata, K.' 1 'Morikawa, S.' 2 'Nakamura, H.' 3 'Sekikawa, A.' 4 'Inoue, T.' 5 'Kanai, H.' 6 'Sarai, A.' 7 'Ishii, S.' 8 'Nishimura, Y.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.' 'Cell(Cambridge,Mass.)' 79 639 648 1994 CELLB5 US 0092-8674 0998 ? 7954830 '10.1016/0092-8674(94)90549-5' 1 ;Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core ; Proc.Natl.Acad.Sci.USA 89 6428 ? 1992 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ogata, K.' 1 ? primary 'Morikawa, S.' 2 ? primary 'Nakamura, H.' 3 ? primary 'Sekikawa, A.' 4 ? primary 'Inoue, T.' 5 ? primary 'Kanai, H.' 6 ? primary 'Sarai, A.' 7 ? primary 'Ishii, S.' 8 ? primary 'Nishimura, Y.' 9 ? 1 'Ogata, K.' 10 ? 1 'Hojo, H.' 11 ? 1 'Aimoto, S.' 12 ? 1 'Nakai, T.' 13 ? 1 'Nakamura, H.' 14 ? 1 'Sarai, A.' 15 ? 1 'Ishii, S.' 16 ? 1 'Nishimura, Y.' 17 ? # _cell.entry_id 1MSE _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MSE _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3') ; 4811.158 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3') ; 4984.237 1 ? ? ? ? 3 polymer man 'C-Myb DNA-Binding Domain' 12676.775 1 ? ? ? ? # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'DEOXYRIBONUCLEIC ACID' 2 'DEOXYRIBONUCLEIC ACID' 3 POLYPEPTIDE # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DA)(DA)(DC)(DT)(DG)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DT)' CCTAACTGACACACAT A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DC)(DA)(DG)(DT)(DT)(DA)(DG)(DG)' ATGTGTGTCAGTTAGG B ? 3 'polypeptide(L)' no no ;MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE IAKLLPGRTDNAIKNHWNSTMRRKV ; ;MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE IAKLLPGRTDNAIKNHWNSTMRRKV ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DA n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DC n 1 13 DA n 1 14 DC n 1 15 DA n 1 16 DT n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DT n 2 14 DA n 2 15 DG n 2 16 DG n 3 1 MET n 3 2 LEU n 3 3 ILE n 3 4 LYS n 3 5 GLY n 3 6 PRO n 3 7 TRP n 3 8 THR n 3 9 LYS n 3 10 GLU n 3 11 GLU n 3 12 ASP n 3 13 GLN n 3 14 ARG n 3 15 VAL n 3 16 ILE n 3 17 LYS n 3 18 LEU n 3 19 VAL n 3 20 GLN n 3 21 LYS n 3 22 TYR n 3 23 GLY n 3 24 PRO n 3 25 LYS n 3 26 ARG n 3 27 TRP n 3 28 SER n 3 29 VAL n 3 30 ILE n 3 31 ALA n 3 32 LYS n 3 33 HIS n 3 34 LEU n 3 35 LYS n 3 36 GLY n 3 37 ARG n 3 38 ILE n 3 39 GLY n 3 40 LYS n 3 41 GLN n 3 42 CYS n 3 43 ARG n 3 44 GLU n 3 45 ARG n 3 46 TRP n 3 47 HIS n 3 48 ASN n 3 49 HIS n 3 50 LEU n 3 51 ASN n 3 52 PRO n 3 53 GLU n 3 54 VAL n 3 55 LYS n 3 56 LYS n 3 57 THR n 3 58 SER n 3 59 TRP n 3 60 THR n 3 61 GLU n 3 62 GLU n 3 63 GLU n 3 64 ASP n 3 65 ARG n 3 66 ILE n 3 67 ILE n 3 68 TYR n 3 69 GLN n 3 70 ALA n 3 71 HIS n 3 72 LYS n 3 73 ARG n 3 74 LEU n 3 75 GLY n 3 76 ASN n 3 77 ARG n 3 78 TRP n 3 79 ALA n 3 80 GLU n 3 81 ILE n 3 82 ALA n 3 83 LYS n 3 84 LEU n 3 85 LEU n 3 86 PRO n 3 87 GLY n 3 88 ARG n 3 89 THR n 3 90 ASP n 3 91 ASN n 3 92 ALA n 3 93 ILE n 3 94 LYS n 3 95 ASN n 3 96 HIS n 3 97 TRP n 3 98 ASN n 3 99 SER n 3 100 THR n 3 101 MET n 3 102 ARG n 3 103 ARG n 3 104 LYS n 3 105 VAL n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PAR2156NCO1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PAR2156NCO1R23 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP MYB_MOUSE P06876 3 90 ? ? 2 PDB 1MSE 1MSE 1 ? ? ? 3 PDB 1MSE 1MSE 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MSE C 2 ? 105 ? P06876 90 ? 193 ? 90 193 2 2 1MSE A 1 ? 16 ? 1MSE 1 ? 16 ? 1 16 3 3 1MSE B 1 ? 16 ? 1MSE 17 ? 32 ? 17 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_refine.entry_id 1MSE _pdbx_nmr_refine.method 'ENERGY MINIMIZATION' _pdbx_nmr_refine.details ;RMSD BOND DISTANCES 0.006 ANGSTROMS RMSD BOND ANGLES 0.857 DEGREES RMSD CHIRAL CENTERS 0.0664 ANGSTROMS NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 1815 NUMBER OF NUCLEIC ACID ATOMS 698 AMBER FORCE FIELD ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1MSE _pdbx_nmr_details.text ;THE STRUCTURES OF N- AND C-TERMINI OF THE PEPTIDE CHAIN (MET 89 - PRO 94 AND ASN 186 - VAL 193) WERE DISORDERED AMONG THE 25 STRUCTURES. THE ORIENTATION OF THE LAST 5 BASE PAIRS OF THE DNA IS POORLY DEFINED WITH RESPECT TO THE CORE OF THE COMPLEX. CONSEQUENTLY, ONLY THE COORDINATES OF BASE PAIRS 1 - 11 OF DNA HAVE BEEN DEPOSITED TOGETHER WITH THOSE OF THE PROTEIN IN THE COMPLEX. ; # _pdbx_nmr_ensemble.entry_id 1MSE _pdbx_nmr_ensemble.conformers_calculated_total_number 25 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal EMBOSS ? 'structure solution' 'T. NAKAI, A. KIDERA, H. NAKAMURA' 1 PRESTO ? refinement MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA 2 # _exptl.entry_id 1MSE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1MSE _struct.title 'SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MSE _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'DNA, DOUBLE HELIX, C-MYB DNA-BINDING DOMAIN, PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 LYS C 9 ? TYR C 22 ? LYS C 97 TYR C 110 1 ? 14 HELX_P HELX_P2 H2 TRP C 27 ? HIS C 33 ? TRP C 115 HIS C 121 1 ? 7 HELX_P HELX_P3 H3 GLY C 39 ? HIS C 47 ? GLY C 127 HIS C 135 1 ? 9 HELX_P HELX_P4 H4 GLU C 61 ? LEU C 74 ? GLU C 149 LEU C 162 1 ? 14 HELX_P HELX_P5 H5 TRP C 78 ? LEU C 84 ? TRP C 166 LEU C 172 1 ? 7 HELX_P HELX_P6 H6 ASN C 91 ? ASN C 98 ? ASN C 179 ASN C 186 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 2 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 2 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 2 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 14 N1 ? ? A DT 3 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 14 N6 ? ? A DT 3 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 4 B DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 4 B DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 5 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 5 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 6 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 6 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 6 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 7 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 7 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 9 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 9 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 10 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 10 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 10 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 11 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 11 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1MSE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MSE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DC 12 12 ? ? ? A . n A 1 13 DA 13 13 ? ? ? A . n A 1 14 DC 14 14 ? ? ? A . n A 1 15 DA 15 15 ? ? ? A . n A 1 16 DT 16 16 ? ? ? A . n B 2 1 DA 1 17 ? ? ? B . n B 2 2 DT 2 18 ? ? ? B . n B 2 3 DG 3 19 ? ? ? B . n B 2 4 DT 4 20 ? ? ? B . n B 2 5 DG 5 21 ? ? ? B . n B 2 6 DT 6 22 22 DT T B . n B 2 7 DG 7 23 23 DG G B . n B 2 8 DT 8 24 24 DT T B . n B 2 9 DC 9 25 25 DC C B . n B 2 10 DA 10 26 26 DA A B . n B 2 11 DG 11 27 27 DG G B . n B 2 12 DT 12 28 28 DT T B . n B 2 13 DT 13 29 29 DT T B . n B 2 14 DA 14 30 30 DA A B . n B 2 15 DG 15 31 31 DG G B . n B 2 16 DG 16 32 32 DG G B . n C 3 1 MET 1 89 89 MET MET C . n C 3 2 LEU 2 90 90 LEU LEU C . n C 3 3 ILE 3 91 91 ILE ILE C . n C 3 4 LYS 4 92 92 LYS LYS C . n C 3 5 GLY 5 93 93 GLY GLY C . n C 3 6 PRO 6 94 94 PRO PRO C . n C 3 7 TRP 7 95 95 TRP TRP C . n C 3 8 THR 8 96 96 THR THR C . n C 3 9 LYS 9 97 97 LYS LYS C . n C 3 10 GLU 10 98 98 GLU GLU C . n C 3 11 GLU 11 99 99 GLU GLU C . n C 3 12 ASP 12 100 100 ASP ASP C . n C 3 13 GLN 13 101 101 GLN GLN C . n C 3 14 ARG 14 102 102 ARG ARG C . n C 3 15 VAL 15 103 103 VAL VAL C . n C 3 16 ILE 16 104 104 ILE ILE C . n C 3 17 LYS 17 105 105 LYS LYS C . n C 3 18 LEU 18 106 106 LEU LEU C . n C 3 19 VAL 19 107 107 VAL VAL C . n C 3 20 GLN 20 108 108 GLN GLN C . n C 3 21 LYS 21 109 109 LYS LYS C . n C 3 22 TYR 22 110 110 TYR TYR C . n C 3 23 GLY 23 111 111 GLY GLY C . n C 3 24 PRO 24 112 112 PRO PRO C . n C 3 25 LYS 25 113 113 LYS LYS C . n C 3 26 ARG 26 114 114 ARG ARG C . n C 3 27 TRP 27 115 115 TRP TRP C . n C 3 28 SER 28 116 116 SER SER C . n C 3 29 VAL 29 117 117 VAL VAL C . n C 3 30 ILE 30 118 118 ILE ILE C . n C 3 31 ALA 31 119 119 ALA ALA C . n C 3 32 LYS 32 120 120 LYS LYS C . n C 3 33 HIS 33 121 121 HIS HIS C . n C 3 34 LEU 34 122 122 LEU LEU C . n C 3 35 LYS 35 123 123 LYS LYS C . n C 3 36 GLY 36 124 124 GLY GLY C . n C 3 37 ARG 37 125 125 ARG ARG C . n C 3 38 ILE 38 126 126 ILE ILE C . n C 3 39 GLY 39 127 127 GLY GLY C . n C 3 40 LYS 40 128 128 LYS LYS C . n C 3 41 GLN 41 129 129 GLN GLN C . n C 3 42 CYS 42 130 130 CYS CYS C . n C 3 43 ARG 43 131 131 ARG ARG C . n C 3 44 GLU 44 132 132 GLU GLU C . n C 3 45 ARG 45 133 133 ARG ARG C . n C 3 46 TRP 46 134 134 TRP TRP C . n C 3 47 HIS 47 135 135 HIS HIS C . n C 3 48 ASN 48 136 136 ASN ASN C . n C 3 49 HIS 49 137 137 HIS HIS C . n C 3 50 LEU 50 138 138 LEU LEU C . n C 3 51 ASN 51 139 139 ASN ASN C . n C 3 52 PRO 52 140 140 PRO PRO C . n C 3 53 GLU 53 141 141 GLU GLU C . n C 3 54 VAL 54 142 142 VAL VAL C . n C 3 55 LYS 55 143 143 LYS LYS C . n C 3 56 LYS 56 144 144 LYS LYS C . n C 3 57 THR 57 145 145 THR THR C . n C 3 58 SER 58 146 146 SER SER C . n C 3 59 TRP 59 147 147 TRP TRP C . n C 3 60 THR 60 148 148 THR THR C . n C 3 61 GLU 61 149 149 GLU GLU C . n C 3 62 GLU 62 150 150 GLU GLU C . n C 3 63 GLU 63 151 151 GLU GLU C . n C 3 64 ASP 64 152 152 ASP ASP C . n C 3 65 ARG 65 153 153 ARG ARG C . n C 3 66 ILE 66 154 154 ILE ILE C . n C 3 67 ILE 67 155 155 ILE ILE C . n C 3 68 TYR 68 156 156 TYR TYR C . n C 3 69 GLN 69 157 157 GLN GLN C . n C 3 70 ALA 70 158 158 ALA ALA C . n C 3 71 HIS 71 159 159 HIS HIS C . n C 3 72 LYS 72 160 160 LYS LYS C . n C 3 73 ARG 73 161 161 ARG ARG C . n C 3 74 LEU 74 162 162 LEU LEU C . n C 3 75 GLY 75 163 163 GLY GLY C . n C 3 76 ASN 76 164 164 ASN ASN C . n C 3 77 ARG 77 165 165 ARG ARG C . n C 3 78 TRP 78 166 166 TRP TRP C . n C 3 79 ALA 79 167 167 ALA ALA C . n C 3 80 GLU 80 168 168 GLU GLU C . n C 3 81 ILE 81 169 169 ILE ILE C . n C 3 82 ALA 82 170 170 ALA ALA C . n C 3 83 LYS 83 171 171 LYS LYS C . n C 3 84 LEU 84 172 172 LEU LEU C . n C 3 85 LEU 85 173 173 LEU LEU C . n C 3 86 PRO 86 174 174 PRO PRO C . n C 3 87 GLY 87 175 175 GLY GLY C . n C 3 88 ARG 88 176 176 ARG ARG C . n C 3 89 THR 89 177 177 THR THR C . n C 3 90 ASP 90 178 178 ASP ASP C . n C 3 91 ASN 91 179 179 ASN ASN C . n C 3 92 ALA 92 180 180 ALA ALA C . n C 3 93 ILE 93 181 181 ILE ILE C . n C 3 94 LYS 94 182 182 LYS LYS C . n C 3 95 ASN 95 183 183 ASN ASN C . n C 3 96 HIS 96 184 184 HIS HIS C . n C 3 97 TRP 97 185 185 TRP TRP C . n C 3 98 ASN 98 186 186 ASN ASN C . n C 3 99 SER 99 187 187 SER SER C . n C 3 100 THR 100 188 188 THR THR C . n C 3 101 MET 101 189 189 MET MET C . n C 3 102 ARG 102 190 190 ARG ARG C . n C 3 103 ARG 103 191 191 ARG ARG C . n C 3 104 LYS 104 192 192 LYS LYS C . n C 3 105 VAL 105 193 193 VAL VAL C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-03-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_nmr_constraints.entry_id 1MSE _pdbx_nmr_constraints.NOE_constraints_total 1732 _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 350 _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.55 108.30 3.25 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.71 108.30 2.41 0.30 N 3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.70 108.30 3.40 0.30 N 4 1 C4 A DT 3 ? ? C5 A DT 3 ? ? C6 A DT 3 ? ? 122.67 118.00 4.67 0.60 N 5 1 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.66 119.00 4.66 0.60 N 6 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 113.67 122.90 -9.23 0.60 N 7 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.46 108.30 2.16 0.30 N 8 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.48 108.30 2.18 0.30 N 9 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.47 108.30 2.17 0.30 N 10 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.12 108.30 2.82 0.30 N 11 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 122.68 118.00 4.68 0.60 N 12 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.46 119.00 4.46 0.60 N 13 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 113.85 122.90 -9.05 0.60 N 14 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.95 108.30 2.65 0.30 N 15 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.02 108.30 2.72 0.30 N 16 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.86 108.30 2.56 0.30 N 17 1 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 110.23 108.30 1.93 0.30 N 18 1 "O4'" B DT 22 ? ? "C1'" B DT 22 ? ? N1 B DT 22 ? ? 110.81 108.30 2.51 0.30 N 19 1 C4 B DT 22 ? ? C5 B DT 22 ? ? C6 B DT 22 ? ? 122.78 118.00 4.78 0.60 N 20 1 C4 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 123.51 119.00 4.51 0.60 N 21 1 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 113.71 122.90 -9.19 0.60 N 22 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 111.42 108.30 3.12 0.30 N 23 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1 B DT 24 ? ? 110.99 108.30 2.69 0.30 N 24 1 C4 B DT 24 ? ? C5 B DT 24 ? ? C6 B DT 24 ? ? 122.68 118.00 4.68 0.60 N 25 1 C4 B DT 24 ? ? C5 B DT 24 ? ? C7 B DT 24 ? ? 123.29 119.00 4.29 0.60 N 26 1 C6 B DT 24 ? ? C5 B DT 24 ? ? C7 B DT 24 ? ? 114.03 122.90 -8.87 0.60 N 27 1 "O4'" B DC 25 ? ? "C1'" B DC 25 ? ? N1 B DC 25 ? ? 110.80 108.30 2.50 0.30 N 28 1 "O4'" B DA 26 ? ? "C1'" B DA 26 ? ? N9 B DA 26 ? ? 110.60 108.30 2.30 0.30 N 29 1 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? N9 B DG 27 ? ? 110.67 108.30 2.37 0.30 N 30 1 C4 B DT 28 ? ? C5 B DT 28 ? ? C6 B DT 28 ? ? 122.82 118.00 4.82 0.60 N 31 1 C4 B DT 28 ? ? C5 B DT 28 ? ? C7 B DT 28 ? ? 123.47 119.00 4.47 0.60 N 32 1 C6 B DT 28 ? ? C5 B DT 28 ? ? C7 B DT 28 ? ? 113.71 122.90 -9.19 0.60 N 33 1 "O4'" B DT 29 ? ? "C1'" B DT 29 ? ? N1 B DT 29 ? ? 111.04 108.30 2.74 0.30 N 34 1 C4 B DT 29 ? ? C5 B DT 29 ? ? C6 B DT 29 ? ? 122.70 118.00 4.70 0.60 N 35 1 C4 B DT 29 ? ? C5 B DT 29 ? ? C7 B DT 29 ? ? 123.32 119.00 4.32 0.60 N 36 1 C6 B DT 29 ? ? C5 B DT 29 ? ? C7 B DT 29 ? ? 113.97 122.90 -8.93 0.60 N 37 1 "O4'" B DA 30 ? ? "C1'" B DA 30 ? ? N9 B DA 30 ? ? 110.81 108.30 2.51 0.30 N 38 1 "O4'" B DG 31 ? ? "C1'" B DG 31 ? ? N9 B DG 31 ? ? 111.12 108.30 2.82 0.30 N 39 1 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9 B DG 32 ? ? 110.94 108.30 2.64 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU C 90 ? ? 58.75 -174.90 2 1 ILE C 91 ? ? 32.98 64.55 3 1 GLU C 98 ? ? -90.12 36.21 4 1 GLU C 99 ? ? -147.61 -53.96 5 1 LYS C 113 ? ? -174.37 42.06 6 1 ARG C 114 ? ? -153.22 30.07 7 1 LYS C 123 ? ? 65.25 -72.42 8 1 ARG C 125 ? ? -65.38 99.39 9 1 TRP C 134 ? ? -56.19 -70.88 10 1 HIS C 135 ? ? -68.69 91.65 11 1 ASN C 136 ? ? -175.85 -66.53 12 1 HIS C 137 ? ? -173.70 21.68 13 1 ASN C 139 ? ? -34.99 116.56 14 1 ARG C 165 ? ? -99.92 59.56 15 1 ASP C 178 ? ? 40.52 -103.00 16 1 ASN C 186 ? ? -78.64 44.64 17 1 SER C 187 ? ? -155.97 -46.69 18 1 LYS C 192 ? ? 64.05 74.33 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 4 ? ? 0.098 'SIDE CHAIN' 2 1 DC A 10 ? ? 0.065 'SIDE CHAIN' 3 1 DC B 25 ? ? 0.065 'SIDE CHAIN' 4 1 DT B 29 ? ? 0.063 'SIDE CHAIN' 5 1 ARG C 133 ? ? 0.121 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 12 ? A DC 12 2 1 Y 1 A DA 13 ? A DA 13 3 1 Y 1 A DC 14 ? A DC 14 4 1 Y 1 A DA 15 ? A DA 15 5 1 Y 1 A DT 16 ? A DT 16 6 1 Y 1 B DA 17 ? B DA 1 7 1 Y 1 B DT 18 ? B DT 2 8 1 Y 1 B DG 19 ? B DG 3 9 1 Y 1 B DT 20 ? B DT 4 10 1 Y 1 B DG 21 ? B DG 5 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MSE 'double helix' 1MSE 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 16 1_555 0.431 -0.186 0.064 -3.066 -18.691 -0.987 1 A_DC1:DG32_B A 1 ? B 32 ? 19 1 1 A DC 2 1_555 B DG 15 1_555 0.390 -0.166 0.387 -12.592 -4.899 -2.767 2 A_DC2:DG31_B A 2 ? B 31 ? 19 1 1 A DT 3 1_555 B DA 14 1_555 0.243 -0.088 -0.025 -0.459 -8.663 -0.724 3 A_DT3:DA30_B A 3 ? B 30 ? 20 1 1 A DA 4 1_555 B DT 13 1_555 -0.295 -0.037 -0.308 -22.537 -19.652 -3.755 4 A_DA4:DT29_B A 4 ? B 29 ? 20 1 1 A DA 5 1_555 B DT 12 1_555 0.244 -0.020 0.172 -14.153 -4.078 -4.916 5 A_DA5:DT28_B A 5 ? B 28 ? 20 1 1 A DC 6 1_555 B DG 11 1_555 0.057 -0.092 0.429 7.131 -5.431 -5.856 6 A_DC6:DG27_B A 6 ? B 27 ? 19 1 1 A DT 7 1_555 B DA 10 1_555 0.031 -0.093 0.099 11.588 -13.291 -3.938 7 A_DT7:DA26_B A 7 ? B 26 ? 20 1 1 A DG 8 1_555 B DC 9 1_555 -0.549 -0.226 -0.012 -2.539 -17.937 -1.020 8 A_DG8:DC25_B A 8 ? B 25 ? 19 1 1 A DA 9 1_555 B DT 8 1_555 0.020 -0.112 0.417 -0.934 -11.199 -3.033 9 A_DA9:DT24_B A 9 ? B 24 ? 20 1 1 A DC 10 1_555 B DG 7 1_555 0.232 -0.173 0.461 0.793 -15.346 -3.065 10 A_DC10:DG23_B A 10 ? B 23 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 -0.099 -0.128 0.425 5.479 -10.438 -3.996 11 A_DA11:DT22_B A 11 ? B 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 16 1_555 A DC 2 1_555 B DG 15 1_555 -0.296 -1.418 3.310 -0.996 6.098 35.064 -3.188 0.342 3.035 10.025 1.637 35.587 1 AA_DC1DC2:DG31DG32_BB A 1 ? B 32 ? A 2 ? B 31 ? 1 A DC 2 1_555 B DG 15 1_555 A DT 3 1_555 B DA 14 1_555 0.272 -0.640 2.849 3.552 -4.033 31.593 -0.514 0.076 2.919 -7.342 -6.466 32.035 2 AA_DC2DT3:DA30DG31_BB A 2 ? B 31 ? A 3 ? B 30 ? 1 A DT 3 1_555 B DA 14 1_555 A DA 4 1_555 B DT 13 1_555 -0.478 -1.303 3.520 2.764 10.557 35.244 -3.518 1.138 2.976 16.940 -4.436 36.844 3 AA_DT3DA4:DT29DA30_BB A 3 ? B 30 ? A 4 ? B 29 ? 1 A DA 4 1_555 B DT 13 1_555 A DA 5 1_555 B DT 12 1_555 -0.344 -0.317 3.013 -3.822 -5.207 36.406 0.155 0.062 3.047 -8.254 6.059 36.955 4 AA_DA4DA5:DT28DT29_BB A 4 ? B 29 ? A 5 ? B 28 ? 1 A DA 5 1_555 B DT 12 1_555 A DC 6 1_555 B DG 11 1_555 -0.041 -0.481 2.894 -3.582 -6.363 29.997 0.211 -0.551 2.917 -12.069 6.794 30.853 5 AA_DA5DC6:DG27DT28_BB A 5 ? B 28 ? A 6 ? B 27 ? 1 A DC 6 1_555 B DG 11 1_555 A DT 7 1_555 B DA 10 1_555 0.204 -0.900 2.995 2.522 -1.882 31.855 -1.318 0.052 3.049 -3.418 -4.581 32.006 6 AA_DC6DT7:DA26DG27_BB A 6 ? B 27 ? A 7 ? B 26 ? 1 A DT 7 1_555 B DA 10 1_555 A DG 8 1_555 B DC 9 1_555 -0.002 -0.831 3.256 0.645 11.346 34.211 -2.891 0.091 2.845 18.660 -1.060 35.996 7 AA_DT7DG8:DC25DA26_BB A 7 ? B 26 ? A 8 ? B 25 ? 1 A DG 8 1_555 B DC 9 1_555 A DA 9 1_555 B DT 8 1_555 0.032 -0.893 3.055 -2.653 -3.198 36.492 -1.004 -0.393 3.109 -5.087 4.220 36.719 8 AA_DG8DA9:DT24DC25_BB A 8 ? B 25 ? A 9 ? B 24 ? 1 A DA 9 1_555 B DT 8 1_555 A DC 10 1_555 B DG 7 1_555 -0.324 -1.177 3.130 -0.961 -2.185 34.329 -1.659 0.403 3.204 -3.696 1.625 34.409 9 AA_DA9DC10:DG23DT24_BB A 9 ? B 24 ? A 10 ? B 23 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 -0.807 -0.341 2.880 -1.670 5.775 33.733 -1.376 1.139 2.820 9.854 2.850 34.249 10 AA_DC10DA11:DT22DG23_BB A 10 ? B 23 ? A 11 ? B 22 ? #