HEADER TRANSCRIPTION/DNA 24-SEP-02 1MUR OBSLTE 22-FEB-12 1MUR 4DM0 TITLE TN5 TRANSPOSASE: 20MER OUTSIDE END 2 MN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TRANSFERRED STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA NON-TRANSFERRED STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TN5 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: PLASPOSON PTNMOD-OCM; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE 21 BP SEQUENCE OCCURS NATURALLY IN THE TN5 SOURCE 4 TRANSPOSON; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THE 20 BP SEQUENCE OCCURS NATURALLY IN THE TN5 SOURCE 8 TRANSPOSON; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS TRANSPOSASE, DNA BINDING, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN,S.LOVELL,I.Y.GORYSHIN,W.R.REZNIKOFF,I.RAYMENT REVDAT 3 22-FEB-12 1MUR 1 OBSLTE VERSN REVDAT 2 24-FEB-09 1MUR 1 VERSN REVDAT 1 04-OCT-02 1MUR 0 SPRSDE 04-OCT-02 1MUR 1L1A JRNL AUTH S.LOVELL,I.Y.GORYSHIN,W.R.REZNIKOFF,I.RAYMENT JRNL TITL TWO-METAL ACTIVE SITE BINDING OF A TN5 TRANSPOSASE SYNAPTIC JRNL TITL 2 COMPLEX. JRNL REF NAT.STRUCT.BIOL. V. 9 278 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 11896402 JRNL DOI 10.1038/NSB778 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30703 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3095 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2020 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 30703 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3569 REMARK 3 NUCLEIC ACID ATOMS : 822 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.130 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23600 REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1F3I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-1500, POTASSIUM GLUTAMATE, REMARK 280 POTASSIUM SUCCINATE, MANGANESE CHLORIDE, PH 5.00, BATCH, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 194.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 155.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.80000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 194.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER, THE FOLLOWING ROTATION MATRIX AND TRANSLATION REMARK 300 VECTOR MAY BE USED TO GENERATE THE COMPLETE DIMER REMARK 300 ROTATION MATRIX: REMARK 300 0.50000 0.86602 0.00000 REMARK 300 0.86602 -0.50000 0.00000 REMARK 300 0.00000 0.00000 -1.00000 REMARK 300 TRANSLATION VECTOR IN AS -56.19945 97.34082 193.99969 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -56.20000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.34126 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 194.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 250 REMARK 465 GLY A 251 REMARK 465 GLY A 292 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389 REMARK 465 SER A 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA B 21 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 21 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 21 C2 N3 C4 REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 12 O3' DA B 12 C3' -0.043 REMARK 500 DA B 21 P DA B 21 O5' -0.078 REMARK 500 DC C 1 P DC C 1 OP3 -0.085 REMARK 500 DT C 2 O3' DT C 2 C3' -0.064 REMARK 500 DG C 3 O3' DG C 3 C3' -0.051 REMARK 500 DA C 12 O3' DA C 12 C3' -0.051 REMARK 500 DC C 15 O3' DC C 15 C3' -0.038 REMARK 500 GLU A 72 CD GLU A 72 OE2 0.067 REMARK 500 GLU A 110 CD GLU A 110 OE2 0.070 REMARK 500 GLU A 133 CD GLU A 133 OE2 0.066 REMARK 500 GLU A 159 CD GLU A 159 OE2 0.073 REMARK 500 GLU A 161 CD GLU A 161 OE2 0.066 REMARK 500 GLU A 327 CD GLU A 327 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 3 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DT B 5 C4' - C3' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 8 P - O5' - C5' ANGL. DEV. = -9.7 DEGREES REMARK 500 DT B 9 P - O5' - C5' ANGL. DEV. = -14.5 DEGREES REMARK 500 DA B 10 C4 - N9 - C1' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG B 16 C8 - N9 - C1' ANGL. DEV. = -11.0 DEGREES REMARK 500 DG B 16 C4 - N9 - C1' ANGL. DEV. = 12.5 DEGREES REMARK 500 DT B 17 C6 - N1 - C1' ANGL. DEV. = -14.5 DEGREES REMARK 500 DT B 17 C2 - N1 - C1' ANGL. DEV. = 14.6 DEGREES REMARK 500 DA B 19 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DA B 19 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC B 18 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DG B 20 C8 - N9 - C1' ANGL. DEV. = 21.5 DEGREES REMARK 500 DG B 20 C4 - N9 - C1' ANGL. DEV. = -23.2 DEGREES REMARK 500 DA B 21 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DG B 20 C3' - O3' - P ANGL. DEV. = -11.5 DEGREES REMARK 500 DC C 1 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DC C 1 C6 - N1 - C1' ANGL. DEV. = -23.7 DEGREES REMARK 500 DC C 1 C2 - N1 - C1' ANGL. DEV. = 21.8 DEGREES REMARK 500 DG C 3 C3' - O3' - P ANGL. DEV. = -12.3 DEGREES REMARK 500 DC C 5 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA C 10 C8 - N9 - C1' ANGL. DEV. = 14.8 DEGREES REMARK 500 DA C 10 C4 - N9 - C1' ANGL. DEV. = -16.1 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 11 C6 - N1 - C1' ANGL. DEV. = -15.2 DEGREES REMARK 500 DT C 11 C2 - N1 - C1' ANGL. DEV. = 12.6 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 14 P - O5' - C5' ANGL. DEV. = -11.1 DEGREES REMARK 500 DA C 14 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC C 15 C6 - N1 - C1' ANGL. DEV. = 8.2 DEGREES REMARK 500 DC C 15 C2 - N1 - C1' ANGL. DEV. = -9.6 DEGREES REMARK 500 DC C 15 C3' - O3' - P ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 24 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TRP A 124 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 248 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 248 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 317 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 317 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 -82.40 -84.26 REMARK 500 ALA A 5 106.64 -58.63 REMARK 500 LEU A 6 -69.29 -168.12 REMARK 500 ASP A 24 123.40 -170.54 REMARK 500 TYR A 41 47.31 -107.43 REMARK 500 GLN A 87 -19.45 -45.63 REMARK 500 HIS A 105 -168.79 -78.61 REMARK 500 GLU A 159 141.57 177.95 REMARK 500 ASP A 192 84.24 -68.89 REMARK 500 LYS A 212 -74.28 -103.03 REMARK 500 LYS A 254 139.25 178.89 REMARK 500 PRO A 290 178.37 -59.64 REMARK 500 VAL A 306 -2.25 -140.75 REMARK 500 LYS A 333 -85.33 -83.44 REMARK 500 GLU A 394 -9.97 -59.06 REMARK 500 ASP A 437 50.76 32.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 18 24.8 L L OUTSIDE RANGE REMARK 500 GLN A 106 21.7 L L OUTSIDE RANGE REMARK 500 GLN A 118 14.2 L L OUTSIDE RANGE REMARK 500 GLU A 159 24.6 L L OUTSIDE RANGE REMARK 500 ILE A 239 23.9 L L OUTSIDE RANGE REMARK 500 ARG A 415 23.3 L L OUTSIDE RANGE REMARK 500 GLU A 417 21.4 L L OUTSIDE RANGE REMARK 500 MET A 436 22.6 L L OUTSIDE RANGE REMARK 500 ILE A 474 21.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 636 O REMARK 620 2 HOH A 637 O 82.7 REMARK 620 3 HOH A 638 O 99.5 142.0 REMARK 620 4 ASP A 97 OD2 93.5 128.5 89.4 REMARK 620 5 GLU A 326 OE2 138.0 64.7 122.5 87.5 REMARK 620 6 GLU A 326 OE1 160.5 112.4 76.5 67.6 49.6 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 DBREF 1MUR A 1 476 UNP Q46731 Q46731_ECOLI 1 476 DBREF 1MUR B 1 21 PDB 1MUR 1MUR 1 21 DBREF 1MUR C 1 20 PDB 1MUR 1MUR 1 20 SEQADV 1MUR LYS A 54 UNP Q46731 GLU 54 ENGINEERED SEQADV 1MUR ALA A 56 UNP Q46731 MET 56 ENGINEERED SEQADV 1MUR LYS A 119 UNP Q46731 ASP 119 ENGINEERED SEQADV 1MUR ALA A 120 UNP Q46731 LYS 120 ENGINEERED SEQADV 1MUR LYS A 345 UNP Q46731 GLU 345 ENGINEERED SEQADV 1MUR PRO A 372 UNP Q46731 LEU 372 ENGINEERED SEQADV 1MUR GLY A 477 UNP Q46731 CLONING ARTIFACT SEQRES 1 B 21 DG DA DC DT DT DG DT DG DT DA DT DA DA SEQRES 2 B 21 DG DA DG DT DC DA DG DA SEQRES 1 C 20 DC DT DG DA DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DA DG DT DC SEQRES 1 A 477 MET ILE THR SER ALA LEU HIS ARG ALA ALA ASP TRP ALA SEQRES 2 A 477 LYS SER VAL PHE SER SER ALA ALA LEU GLY ASP PRO ARG SEQRES 3 A 477 ARG THR ALA ARG LEU VAL ASN VAL ALA ALA GLN LEU ALA SEQRES 4 A 477 LYS TYR SER GLY LYS SER ILE THR ILE SER SER GLU GLY SEQRES 5 A 477 SER LYS ALA ALA GLN GLU GLY ALA TYR ARG PHE ILE ARG SEQRES 6 A 477 ASN PRO ASN VAL SER ALA GLU ALA ILE ARG LYS ALA GLY SEQRES 7 A 477 ALA MET GLN THR VAL LYS LEU ALA GLN GLU PHE PRO GLU SEQRES 8 A 477 LEU LEU ALA ILE GLU ASP THR THR SER LEU SER TYR ARG SEQRES 9 A 477 HIS GLN VAL ALA GLU GLU LEU GLY LYS LEU GLY SER ILE SEQRES 10 A 477 GLN LYS ALA SER ARG GLY TRP TRP VAL HIS SER VAL LEU SEQRES 11 A 477 LEU LEU GLU ALA THR THR PHE ARG THR VAL GLY LEU LEU SEQRES 12 A 477 HIS GLN GLU TRP TRP MET ARG PRO ASP ASP PRO ALA ASP SEQRES 13 A 477 ALA ASP GLU LYS GLU SER GLY LYS TRP LEU ALA ALA ALA SEQRES 14 A 477 ALA THR SER ARG LEU ARG MET GLY SER MET MET SER ASN SEQRES 15 A 477 VAL ILE ALA VAL CYS ASP ARG GLU ALA ASP ILE HIS ALA SEQRES 16 A 477 TYR LEU GLN ASP LYS LEU ALA HIS ASN GLU ARG PHE VAL SEQRES 17 A 477 VAL ARG SER LYS HIS PRO ARG LYS ASP VAL GLU SER GLY SEQRES 18 A 477 LEU TYR LEU TYR ASP HIS LEU LYS ASN GLN PRO GLU LEU SEQRES 19 A 477 GLY GLY TYR GLN ILE SER ILE PRO GLN LYS GLY VAL VAL SEQRES 20 A 477 ASP LYS ARG GLY LYS ARG LYS ASN ARG PRO ALA ARG LYS SEQRES 21 A 477 ALA SER LEU SER LEU ARG SER GLY ARG ILE THR LEU LYS SEQRES 22 A 477 GLN GLY ASN ILE THR LEU ASN ALA VAL LEU ALA GLU GLU SEQRES 23 A 477 ILE ASN PRO PRO LYS GLY GLU THR PRO LEU LYS TRP LEU SEQRES 24 A 477 LEU LEU THR SER GLU PRO VAL GLU SER LEU ALA GLN ALA SEQRES 25 A 477 LEU ARG VAL ILE ASP ILE TYR THR HIS ARG TRP ARG ILE SEQRES 26 A 477 GLU GLU PHE HIS LYS ALA TRP LYS THR GLY ALA GLY ALA SEQRES 27 A 477 GLU ARG GLN ARG MET GLU LYS PRO ASP ASN LEU GLU ARG SEQRES 28 A 477 MET VAL SER ILE LEU SER PHE VAL ALA VAL ARG LEU LEU SEQRES 29 A 477 GLN LEU ARG GLU SER PHE THR PRO PRO GLN ALA LEU ARG SEQRES 30 A 477 ALA GLN GLY LEU LEU LYS GLU ALA GLU HIS VAL GLU SER SEQRES 31 A 477 GLN SER ALA GLU THR VAL LEU THR PRO ASP GLU CYS GLN SEQRES 32 A 477 LEU LEU GLY TYR LEU ASP LYS GLY LYS ARG LYS ARG LYS SEQRES 33 A 477 GLU LYS ALA GLY SER LEU GLN TRP ALA TYR MET ALA ILE SEQRES 34 A 477 ALA ARG LEU GLY GLY PHE MET ASP SER LYS ARG THR GLY SEQRES 35 A 477 ILE ALA SER TRP GLY ALA LEU TRP GLU GLY TRP GLU ALA SEQRES 36 A 477 LEU GLN SER LYS LEU ASP GLY PHE LEU ALA ALA LYS ASP SEQRES 37 A 477 LEU MET ALA GLN GLY ILE LYS ILE GLY HET MN A 501 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN MN 2+ FORMUL 5 HOH *188(H2 O) HELIX 1 1 ARG A 8 SER A 18 1 11 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ARG A 65 1 13 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 HIS A 203 1 11 HELIX 13 13 LEU A 224 ASN A 230 1 7 HELIX 14 14 LYS A 273 ASN A 276 5 4 HELIX 15 15 SER A 308 HIS A 321 1 14 HELIX 16 16 ARG A 322 LYS A 333 1 12 HELIX 17 17 LYS A 345 SER A 369 1 25 HELIX 18 18 SER A 392 VAL A 396 5 5 HELIX 19 19 THR A 398 LYS A 410 1 13 HELIX 20 20 SER A 421 GLY A 433 1 13 HELIX 21 21 SER A 445 ALA A 471 1 27 SHEET 1 A 9 THR A 139 TRP A 148 0 SHEET 2 A 9 ARG A 122 GLU A 133 -1 N VAL A 129 O LEU A 143 SHEET 3 A 9 LEU A 92 TYR A 103 -1 N LEU A 93 O LEU A 132 SHEET 4 A 9 VAL A 183 CYS A 187 1 O ILE A 184 N ALA A 94 SHEET 5 A 9 ARG A 206 ARG A 210 1 O VAL A 208 N ALA A 185 SHEET 6 A 9 LYS A 297 THR A 302 -1 O LEU A 301 N VAL A 209 SHEET 7 A 9 THR A 278 GLU A 286 -1 N ALA A 284 O TRP A 298 SHEET 8 A 9 ARG A 259 THR A 271 -1 N SER A 264 O GLU A 285 SHEET 9 A 9 GLY A 235 ILE A 241 -1 N TYR A 237 O LEU A 263 SHEET 1 B 2 LYS A 216 ASP A 217 0 SHEET 2 B 2 LEU A 222 TYR A 223 -1 O LEU A 222 N ASP A 217 SHEET 1 C 2 LYS A 244 VAL A 247 0 SHEET 2 C 2 ARG A 253 ARG A 256 -1 O LYS A 254 N VAL A 246 LINK MN MN A 501 O HOH A 636 1555 1555 2.61 LINK MN MN A 501 O HOH A 637 1555 1555 1.49 LINK MN MN A 501 O HOH A 638 1555 1555 1.54 LINK MN MN A 501 OD2 ASP A 97 1555 1555 2.02 LINK MN MN A 501 OE2 GLU A 326 1555 1555 2.48 LINK OE1 GLU A 326 MN MN A 501 1555 1555 2.78 SITE 1 AC1 6 ASP A 97 GLU A 326 HOH A 636 HOH A 637 SITE 2 AC1 6 HOH A 638 DA B 21 CRYST1 112.400 112.400 232.800 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008897 0.005137 0.000000 0.00000 SCALE2 0.000000 0.010273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004296 0.00000