HEADER TRANSCRIPTION/DNA 24-SEP-02 1MUS TITLE CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH RESOLVED OUTSIDE TITLE 2 END DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TRANSFERRED STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA NON-TRANSFERRED STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TN5 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN THE TN5 TRANSPOSON; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN THE TN5 TRANSPOSON; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS TRANSPOSASE, HAIRPIN, DNA BINDING, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,J.B.THODEN,M.STEINIGER-WHITE,W.S.REZNIKOFF,S.LOVELL, AUTHOR 2 I.RAYMENT REVDAT 5 14-FEB-24 1MUS 1 REMARK REVDAT 4 27-OCT-21 1MUS 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1MUS 1 VERSN REVDAT 2 01-APR-03 1MUS 1 JRNL AUTHOR REVDAT 1 27-SEP-02 1MUS 0 JRNL AUTH M.STEINIGER-WHITE,I.RAYMENT,W.S.REZNIKOFF JRNL TITL STRUCTURE/FUNCTION INSIGHTS INTO TN5 TRANSPOSITION. JRNL REF CURR.OPIN.STRUCT.BIOL. V. 14 50 2004 JRNL REFN ISSN 0959-440X JRNL PMID 15102449 JRNL DOI 10.1016/J.SBI.2004.01.008 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 60265 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5942 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1930 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1900 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5939 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 60265 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3595 REMARK 3 NUCLEIC ACID ATOMS : 818 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.380 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1F3I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-1500, HEPES, MANGANESE CHLORIDE, REMARK 280 MAGNESIUM CHLORIDE, PH 7.5, BATCH, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.63333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.95000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.31667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 196.58333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.63333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.31667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.95000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER, THE OTHER HALF OF THE DIMER MAY BE GENERATED BY REMARK 300 USE OF THE FOLLOWING ROTATION MATRIX AND TRANSLATION VECTOR REMARK 300 ROTATION MATRIX: 0.50000 0.86603 0.00000 0.86603 -0.50000 0.00000 REMARK 300 0.00000 0.00000 -1.00000 TRANSLATION VECTOR IN AS -0.00045 -0.00055 REMARK 300 196.58308 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 196.58333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 480 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 470 SD MET A 470 12555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 8 O3' DG B 8 C3' -0.050 REMARK 500 DA B 19 O3' DA B 19 C3' -0.042 REMARK 500 DG B 20 O3' DG B 20 C3' -0.040 REMARK 500 DC C 1 P DC C 1 OP3 -0.095 REMARK 500 DC C 5 O3' DC C 5 C3' -0.051 REMARK 500 GLU A 110 CD GLU A 110 OE2 0.066 REMARK 500 GLU A 190 CD GLU A 190 OE2 0.070 REMARK 500 GLU A 219 CD GLU A 219 OE2 0.072 REMARK 500 GLU A 304 CD GLU A 304 OE2 0.071 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.069 REMARK 500 GLU A 344 CD GLU A 344 OE2 0.078 REMARK 500 GLU A 454 CD GLU A 454 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 4 C4 - C5 - C7 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT B 4 C6 - C5 - C7 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT B 7 C6 - N1 - C1' ANGL. DEV. = -10.0 DEGREES REMARK 500 DT B 7 C2 - N1 - C1' ANGL. DEV. = 10.0 DEGREES REMARK 500 DT B 9 P - O5' - C5' ANGL. DEV. = -13.1 DEGREES REMARK 500 DT B 9 C5' - C4' - O4' ANGL. DEV. = -12.0 DEGREES REMARK 500 DA B 12 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG B 14 C8 - N9 - C1' ANGL. DEV. = 12.1 DEGREES REMARK 500 DG B 14 C4 - N9 - C1' ANGL. DEV. = -11.3 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA B 19 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B 20 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 1 OP1 - P - OP2 ANGL. DEV. = -13.7 DEGREES REMARK 500 DC C 1 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 5 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 7 C6 - N1 - C1' ANGL. DEV. = 8.9 DEGREES REMARK 500 DC C 7 C2 - N1 - C1' ANGL. DEV. = -8.7 DEGREES REMARK 500 DT C 9 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 9 N3 - C4 - O4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT C 9 C6 - N1 - C1' ANGL. DEV. = -9.2 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT C 11 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT C 11 C6 - N1 - C1' ANGL. DEV. = -9.6 DEGREES REMARK 500 DA C 12 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 13 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 13 C6 - N1 - C1' ANGL. DEV. = -11.4 DEGREES REMARK 500 DC C 13 C2 - N1 - C1' ANGL. DEV. = 9.3 DEGREES REMARK 500 DC C 15 C6 - N1 - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 DC C 15 C2 - N1 - C1' ANGL. DEV. = -14.4 DEGREES REMARK 500 DC C 15 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DA C 16 O4' - C1' - N9 ANGL. DEV. = -11.2 DEGREES REMARK 500 DA C 17 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 20 C6 - N1 - C2 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 20 C6 - N1 - C1' ANGL. DEV. = 11.1 DEGREES REMARK 500 DC C 20 C2 - N1 - C1' ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP A 24 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -59.69 -143.54 REMARK 500 ASP A 24 119.05 -175.26 REMARK 500 TYR A 41 55.83 -100.87 REMARK 500 PRO A 290 159.01 -45.77 REMARK 500 LYS A 333 -88.79 -82.81 REMARK 500 LYS A 410 116.07 -33.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 478 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 20 O3' REMARK 620 2 HOH B 21 O 84.0 REMARK 620 3 DC C 1 OP1 85.4 109.4 REMARK 620 4 ASP A 97 OD2 177.4 93.4 95.5 REMARK 620 5 GLU A 326 OE1 84.5 85.3 161.2 95.4 REMARK 620 6 GLU A 326 OE2 94.5 143.6 106.7 87.7 58.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 479 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 1 OP1 REMARK 620 2 DC C 1 OP2 65.2 REMARK 620 3 ASP A 97 OD1 89.9 154.9 REMARK 620 4 ASP A 188 OD2 92.5 91.9 86.6 REMARK 620 5 HOH A 485 O 85.7 97.1 82.6 169.1 REMARK 620 6 HOH A 486 O 169.6 105.4 99.7 92.3 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 480 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 178 O REMARK 620 2 SER A 178 O 90.2 REMARK 620 3 SER A 181 OG 83.6 156.3 REMARK 620 4 SER A 181 OG 155.7 82.3 111.9 REMARK 620 5 HOH A 974 O 80.4 108.2 93.3 80.2 REMARK 620 6 HOH A 974 O 109.4 79.3 81.2 91.9 168.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 481 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 451 OE1 REMARK 620 2 GLU A 454 OE1 105.6 REMARK 620 3 HOH A 726 O 84.2 79.2 REMARK 620 4 HOH A 730 O 146.0 100.9 80.3 REMARK 620 5 HOH A 765 O 74.0 82.5 146.4 131.0 REMARK 620 6 HOH A 794 O 80.6 159.2 81.8 67.4 118.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 484 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MUR RELATED DB: PDB DBREF 1MUS A 1 476 UNP Q46731 Q46731_ECOLI 1 476 DBREF 1MUS B 1 20 PDB 1MUS 1MUS 1 20 DBREF 1MUS C 1 20 PDB 1MUS 1MUS 1 20 SEQADV 1MUS LYS A 54 UNP Q46731 GLU 54 ENGINEERED MUTATION SEQADV 1MUS ALA A 56 UNP Q46731 MET 56 ENGINEERED MUTATION SEQADV 1MUS LYS A 119 UNP Q46731 ASP 119 ENGINEERED MUTATION SEQADV 1MUS ALA A 120 UNP Q46731 LYS 120 ENGINEERED MUTATION SEQADV 1MUS LYS A 345 UNP Q46731 GLU 345 ENGINEERED MUTATION SEQADV 1MUS PRO A 372 UNP Q46731 LEU 372 ENGINEERED MUTATION SEQADV 1MUS GLY A 477 UNP Q46731 CLONING ARTIFACT SEQRES 1 B 20 DG DA DC DT DT DG DT DG DT DA DT DA DA SEQRES 2 B 20 DG DA DG DT DC DA DG SEQRES 1 C 20 DC DT DG DA DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DA DG DT DC SEQRES 1 A 477 MET ILE THR SER ALA LEU HIS ARG ALA ALA ASP TRP ALA SEQRES 2 A 477 LYS SER VAL PHE SER SER ALA ALA LEU GLY ASP PRO ARG SEQRES 3 A 477 ARG THR ALA ARG LEU VAL ASN VAL ALA ALA GLN LEU ALA SEQRES 4 A 477 LYS TYR SER GLY LYS SER ILE THR ILE SER SER GLU GLY SEQRES 5 A 477 SER LYS ALA ALA GLN GLU GLY ALA TYR ARG PHE ILE ARG SEQRES 6 A 477 ASN PRO ASN VAL SER ALA GLU ALA ILE ARG LYS ALA GLY SEQRES 7 A 477 ALA MET GLN THR VAL LYS LEU ALA GLN GLU PHE PRO GLU SEQRES 8 A 477 LEU LEU ALA ILE GLU ASP THR THR SER LEU SER TYR ARG SEQRES 9 A 477 HIS GLN VAL ALA GLU GLU LEU GLY LYS LEU GLY SER ILE SEQRES 10 A 477 GLN LYS ALA SER ARG GLY TRP TRP VAL HIS SER VAL LEU SEQRES 11 A 477 LEU LEU GLU ALA THR THR PHE ARG THR VAL GLY LEU LEU SEQRES 12 A 477 HIS GLN GLU TRP TRP MET ARG PRO ASP ASP PRO ALA ASP SEQRES 13 A 477 ALA ASP GLU LYS GLU SER GLY LYS TRP LEU ALA ALA ALA SEQRES 14 A 477 ALA THR SER ARG LEU ARG MET GLY SER MET MET SER ASN SEQRES 15 A 477 VAL ILE ALA VAL CYS ASP ARG GLU ALA ASP ILE HIS ALA SEQRES 16 A 477 TYR LEU GLN ASP LYS LEU ALA HIS ASN GLU ARG PHE VAL SEQRES 17 A 477 VAL ARG SER LYS HIS PRO ARG LYS ASP VAL GLU SER GLY SEQRES 18 A 477 LEU TYR LEU TYR ASP HIS LEU LYS ASN GLN PRO GLU LEU SEQRES 19 A 477 GLY GLY TYR GLN ILE SER ILE PRO GLN LYS GLY VAL VAL SEQRES 20 A 477 ASP LYS ARG GLY LYS ARG LYS ASN ARG PRO ALA ARG LYS SEQRES 21 A 477 ALA SER LEU SER LEU ARG SER GLY ARG ILE THR LEU LYS SEQRES 22 A 477 GLN GLY ASN ILE THR LEU ASN ALA VAL LEU ALA GLU GLU SEQRES 23 A 477 ILE ASN PRO PRO LYS GLY GLU THR PRO LEU LYS TRP LEU SEQRES 24 A 477 LEU LEU THR SER GLU PRO VAL GLU SER LEU ALA GLN ALA SEQRES 25 A 477 LEU ARG VAL ILE ASP ILE TYR THR HIS ARG TRP ARG ILE SEQRES 26 A 477 GLU GLU PHE HIS LYS ALA TRP LYS THR GLY ALA GLY ALA SEQRES 27 A 477 GLU ARG GLN ARG MET GLU LYS PRO ASP ASN LEU GLU ARG SEQRES 28 A 477 MET VAL SER ILE LEU SER PHE VAL ALA VAL ARG LEU LEU SEQRES 29 A 477 GLN LEU ARG GLU SER PHE THR PRO PRO GLN ALA LEU ARG SEQRES 30 A 477 ALA GLN GLY LEU LEU LYS GLU ALA GLU HIS VAL GLU SER SEQRES 31 A 477 GLN SER ALA GLU THR VAL LEU THR PRO ASP GLU CYS GLN SEQRES 32 A 477 LEU LEU GLY TYR LEU ASP LYS GLY LYS ARG LYS ARG LYS SEQRES 33 A 477 GLU LYS ALA GLY SER LEU GLN TRP ALA TYR MET ALA ILE SEQRES 34 A 477 ALA ARG LEU GLY GLY PHE MET ASP SER LYS ARG THR GLY SEQRES 35 A 477 ILE ALA SER TRP GLY ALA LEU TRP GLU GLY TRP GLU ALA SEQRES 36 A 477 LEU GLN SER LYS LEU ASP GLY PHE LEU ALA ALA LYS ASP SEQRES 37 A 477 LEU MET ALA GLN GLY ILE LYS ILE GLY HET MN A 478 1 HET MN A 479 1 HET MG A 480 1 HET MG A 481 1 HET EDO A 482 4 HET EDO A 483 4 HET EDO A 484 4 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 MN 2(MN 2+) FORMUL 6 MG 2(MG 2+) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *615(H2 O) HELIX 1 1 ARG A 8 SER A 18 1 11 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ARG A 65 1 13 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 HIS A 203 1 11 HELIX 13 13 TYR A 223 ASN A 230 1 8 HELIX 14 14 LYS A 273 ASN A 276 5 4 HELIX 15 15 SER A 308 HIS A 321 1 14 HELIX 16 16 ARG A 322 THR A 334 1 13 HELIX 17 17 GLY A 337 GLN A 341 5 5 HELIX 18 18 LYS A 345 THR A 371 1 27 HELIX 19 19 SER A 392 VAL A 396 5 5 HELIX 20 20 THR A 398 LYS A 410 1 13 HELIX 21 21 SER A 421 GLY A 433 1 13 HELIX 22 22 SER A 445 GLN A 472 1 28 SHEET 1 A 9 THR A 139 TRP A 148 0 SHEET 2 A 9 ARG A 122 GLU A 133 -1 N VAL A 129 O LEU A 143 SHEET 3 A 9 LEU A 92 TYR A 103 -1 N ASP A 97 O SER A 128 SHEET 4 A 9 VAL A 183 CYS A 187 1 O ILE A 184 N ALA A 94 SHEET 5 A 9 ARG A 206 ARG A 210 1 O VAL A 208 N ALA A 185 SHEET 6 A 9 LYS A 297 THR A 302 -1 O LEU A 301 N VAL A 209 SHEET 7 A 9 ILE A 277 ILE A 287 -1 N ASN A 280 O THR A 302 SHEET 8 A 9 ARG A 259 LEU A 272 -1 N SER A 262 O ILE A 287 SHEET 9 A 9 GLY A 235 ILE A 241 -1 N ILE A 241 O ARG A 259 SHEET 1 B 2 LYS A 244 VAL A 247 0 SHEET 2 B 2 ARG A 253 ARG A 256 -1 O LYS A 254 N VAL A 246 LINK O3' DG B 20 MN MN A 478 1555 1555 1.90 LINK O HOH B 21 MN MN A 478 1555 1555 2.27 LINK OP1 DC C 1 MN MN A 478 1555 1555 2.07 LINK OP1 DC C 1 MN MN A 479 1555 1555 2.15 LINK OP2 DC C 1 MN MN A 479 1555 1555 2.38 LINK OD2 ASP A 97 MN MN A 478 1555 1555 2.18 LINK OD1 ASP A 97 MN MN A 479 1555 1555 2.11 LINK O SER A 178 MG MG A 480 1555 1555 2.54 LINK O SER A 178 MG MG A 480 11655 1555 2.58 LINK OG SER A 181 MG MG A 480 1555 1555 2.56 LINK OG SER A 181 MG MG A 480 11655 1555 2.60 LINK OD2 ASP A 188 MN MN A 479 1555 1555 2.15 LINK OE1 GLU A 326 MN MN A 478 1555 1555 2.45 LINK OE2 GLU A 326 MN MN A 478 1555 1555 2.08 LINK OE1 GLU A 451 MG MG A 481 1555 1555 2.13 LINK OE1 GLU A 454 MG MG A 481 1555 1555 2.26 LINK MN MN A 479 O HOH A 485 1555 1555 2.23 LINK MN MN A 479 O HOH A 486 1555 1555 2.21 LINK MG MG A 480 O HOH A 974 1555 1555 1.74 LINK MG MG A 480 O HOH A 974 1555 11655 1.75 LINK MG MG A 481 O HOH A 726 1555 1555 2.04 LINK MG MG A 481 O HOH A 730 1555 1555 2.09 LINK MG MG A 481 O HOH A 765 1555 1555 2.57 LINK MG MG A 481 O HOH A 794 1555 1555 2.23 SITE 1 AC1 5 ASP A 97 GLU A 326 DG B 20 HOH B 21 SITE 2 AC1 5 DC C 1 SITE 1 AC2 5 ASP A 97 ASP A 188 HOH A 485 HOH A 486 SITE 2 AC2 5 DC C 1 SITE 1 AC3 3 SER A 178 SER A 181 HOH A 974 SITE 1 AC4 6 GLU A 451 GLU A 454 HOH A 726 HOH A 730 SITE 2 AC4 6 HOH A 765 HOH A 794 SITE 1 AC5 4 ARG A 256 LEU A 296 DT C 2 DG C 3 SITE 1 AC6 6 SER A 42 THR A 334 GLY A 335 TRP A 450 SITE 2 AC6 6 HOH A 653 HOH A 802 SITE 1 AC7 6 GLU A 146 TRP A 148 GLU A 159 LYS A 164 SITE 2 AC7 6 ARG A 415 HOH A 577 CRYST1 112.700 112.700 235.900 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008873 0.005123 0.000000 0.00000 SCALE2 0.000000 0.010246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004239 0.00000