data_1MWI # _entry.id 1MWI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MWI pdb_00001mwi 10.2210/pdb1mwi/pdb NDB PD0353 ? ? RCSB RCSB017248 ? ? WWPDB D_1000017248 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-10-04 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-07-09 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MWI _pdbx_database_status.recvd_initial_deposition_date 2002-09-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1MUG _pdbx_database_related.details 'Crystal structure of native MUG' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barrett, T.E.' 1 'Savva, R.' 2 'Panayotou, G.' 3 'Brown, T.' 4 'Barlow, T.' 5 'Jiricny, J.' 6 'Pearl, L.H.' 7 # _citation.id primary _citation.title 'Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 92 _citation.page_first 117 _citation.page_last 129 _citation.year 1998 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9489705 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(00)80904-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barrett, T.E.' 1 ? primary 'Savva, R.' 2 ? primary 'Panayotou, G.' 3 ? primary 'Barlow, T.' 4 ? primary 'Brown, T.' 5 ? primary 'Jiricny, J.' 6 ? primary 'Pearl, L.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*GP*(AAB)P*TP*CP*GP*CP*G)-3'" 3571.293 1 ? ? ? ? 2 polymer man 'G/U mismatch-specific DNA glycosylase' 18696.352 1 3.2.2.- ? ? ? 3 water nat water 18.015 122 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'MUG DNA GLYCOSYLASE, Mismatch-specific uracil DNA-glycosylase, UDG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DA)(DG)(AAB)(DT)(DC)(DG)(DC)(DG)' CGCGAGXTCGCG D ? 2 'polypeptide(L)' no no ;MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR ; ;MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR ; A ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 AAB n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n 2 1 MET n 2 2 VAL n 2 3 GLU n 2 4 ASP n 2 5 ILE n 2 6 LEU n 2 7 ALA n 2 8 PRO n 2 9 GLY n 2 10 LEU n 2 11 ARG n 2 12 VAL n 2 13 VAL n 2 14 PHE n 2 15 CYS n 2 16 GLY n 2 17 ILE n 2 18 ASN n 2 19 PRO n 2 20 GLY n 2 21 LEU n 2 22 SER n 2 23 SER n 2 24 ALA n 2 25 GLY n 2 26 THR n 2 27 GLY n 2 28 PHE n 2 29 PRO n 2 30 PHE n 2 31 ALA n 2 32 HIS n 2 33 PRO n 2 34 ALA n 2 35 ASN n 2 36 ARG n 2 37 PHE n 2 38 TRP n 2 39 LYS n 2 40 VAL n 2 41 ILE n 2 42 TYR n 2 43 GLN n 2 44 ALA n 2 45 GLY n 2 46 PHE n 2 47 THR n 2 48 ASP n 2 49 ARG n 2 50 GLN n 2 51 LEU n 2 52 LYS n 2 53 PRO n 2 54 GLN n 2 55 GLU n 2 56 ALA n 2 57 GLN n 2 58 HIS n 2 59 LEU n 2 60 LEU n 2 61 ASP n 2 62 TYR n 2 63 ARG n 2 64 CYS n 2 65 GLY n 2 66 VAL n 2 67 THR n 2 68 LYS n 2 69 LEU n 2 70 VAL n 2 71 ASP n 2 72 ARG n 2 73 PRO n 2 74 THR n 2 75 VAL n 2 76 GLN n 2 77 ALA n 2 78 ASN n 2 79 GLU n 2 80 VAL n 2 81 SER n 2 82 LYS n 2 83 GLN n 2 84 GLU n 2 85 LEU n 2 86 HIS n 2 87 ALA n 2 88 GLY n 2 89 GLY n 2 90 ARG n 2 91 LYS n 2 92 LEU n 2 93 ILE n 2 94 GLU n 2 95 LYS n 2 96 ILE n 2 97 GLU n 2 98 ASP n 2 99 TYR n 2 100 GLN n 2 101 PRO n 2 102 GLN n 2 103 ALA n 2 104 LEU n 2 105 ALA n 2 106 ILE n 2 107 LEU n 2 108 GLY n 2 109 LYS n 2 110 GLN n 2 111 ALA n 2 112 TYR n 2 113 GLU n 2 114 GLN n 2 115 GLY n 2 116 PHE n 2 117 SER n 2 118 GLN n 2 119 ARG n 2 120 GLY n 2 121 ALA n 2 122 GLN n 2 123 TRP n 2 124 GLY n 2 125 LYS n 2 126 GLN n 2 127 THR n 2 128 LEU n 2 129 THR n 2 130 ILE n 2 131 GLY n 2 132 SER n 2 133 THR n 2 134 GLN n 2 135 ILE n 2 136 TRP n 2 137 VAL n 2 138 LEU n 2 139 PRO n 2 140 ASN n 2 141 PRO n 2 142 SER n 2 143 GLY n 2 144 LEU n 2 145 SER n 2 146 ARG n 2 147 VAL n 2 148 SER n 2 149 LEU n 2 150 GLU n 2 151 LYS n 2 152 LEU n 2 153 VAL n 2 154 GLU n 2 155 ALA n 2 156 TYR n 2 157 ARG n 2 158 GLU n 2 159 LEU n 2 160 ASP n 2 161 GLN n 2 162 ALA n 2 163 LEU n 2 164 VAL n 2 165 VAL n 2 166 ARG n 2 167 GLY n 2 168 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene MUG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTRC99A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AAB 'DNA linking' . "2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE" 'ABASIC DEOXYRIBOSE' 'C5 H11 O7 P' 214.110 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT D . n A 1 2 DG 2 2 2 DG GUA D . n A 1 3 DC 3 3 3 DC CYT D . n A 1 4 DG 4 4 4 DG GUA D . n A 1 5 DA 5 5 5 DA ADE D . n A 1 6 DG 6 6 6 DG GUA D . n A 1 7 AAB 7 7 7 AAB APR D . n A 1 8 DT 8 8 8 DT THY D . n A 1 9 DC 9 9 9 DC CYT D . n A 1 10 DG 10 10 10 DG GUA D . n A 1 11 DC 11 11 11 DC CYT D . n A 1 12 DG 12 12 12 DG GUA D . n B 2 1 MET 1 1 1 MET MET A . n B 2 2 VAL 2 2 2 VAL VAL A . n B 2 3 GLU 3 3 3 GLU GLU A . n B 2 4 ASP 4 4 4 ASP ASP A . n B 2 5 ILE 5 5 5 ILE ILE A . n B 2 6 LEU 6 6 6 LEU LEU A . n B 2 7 ALA 7 7 7 ALA ALA A . n B 2 8 PRO 8 8 8 PRO PRO A . n B 2 9 GLY 9 9 9 GLY GLY A . n B 2 10 LEU 10 10 10 LEU LEU A . n B 2 11 ARG 11 11 11 ARG ARG A . n B 2 12 VAL 12 12 12 VAL VAL A . n B 2 13 VAL 13 13 13 VAL VAL A . n B 2 14 PHE 14 14 14 PHE PHE A . n B 2 15 CYS 15 15 15 CYS CYS A . n B 2 16 GLY 16 16 16 GLY GLY A . n B 2 17 ILE 17 17 17 ILE ILE A . n B 2 18 ASN 18 18 18 ASN ASN A . n B 2 19 PRO 19 19 19 PRO PRO A . n B 2 20 GLY 20 20 20 GLY GLY A . n B 2 21 LEU 21 21 21 LEU LEU A . n B 2 22 SER 22 22 22 SER SER A . n B 2 23 SER 23 23 23 SER SER A . n B 2 24 ALA 24 24 24 ALA ALA A . n B 2 25 GLY 25 25 25 GLY GLY A . n B 2 26 THR 26 26 26 THR THR A . n B 2 27 GLY 27 27 27 GLY GLY A . n B 2 28 PHE 28 28 28 PHE PHE A . n B 2 29 PRO 29 29 29 PRO PRO A . n B 2 30 PHE 30 30 30 PHE PHE A . n B 2 31 ALA 31 31 31 ALA ALA A . n B 2 32 HIS 32 32 32 HIS HIS A . n B 2 33 PRO 33 33 33 PRO PRO A . n B 2 34 ALA 34 34 34 ALA ALA A . n B 2 35 ASN 35 35 35 ASN ASN A . n B 2 36 ARG 36 36 36 ARG ARG A . n B 2 37 PHE 37 37 37 PHE PHE A . n B 2 38 TRP 38 38 38 TRP TRP A . n B 2 39 LYS 39 39 39 LYS LYS A . n B 2 40 VAL 40 40 40 VAL VAL A . n B 2 41 ILE 41 41 41 ILE ILE A . n B 2 42 TYR 42 42 42 TYR TYR A . n B 2 43 GLN 43 43 43 GLN GLN A . n B 2 44 ALA 44 44 44 ALA ALA A . n B 2 45 GLY 45 45 45 GLY GLY A . n B 2 46 PHE 46 46 46 PHE PHE A . n B 2 47 THR 47 47 47 THR THR A . n B 2 48 ASP 48 48 48 ASP ASP A . n B 2 49 ARG 49 49 49 ARG ARG A . n B 2 50 GLN 50 50 50 GLN GLN A . n B 2 51 LEU 51 51 51 LEU LEU A . n B 2 52 LYS 52 52 52 LYS LYS A . n B 2 53 PRO 53 53 53 PRO PRO A . n B 2 54 GLN 54 54 54 GLN GLN A . n B 2 55 GLU 55 55 55 GLU GLU A . n B 2 56 ALA 56 56 56 ALA ALA A . n B 2 57 GLN 57 57 57 GLN GLN A . n B 2 58 HIS 58 58 58 HIS HIS A . n B 2 59 LEU 59 59 59 LEU LEU A . n B 2 60 LEU 60 60 60 LEU LEU A . n B 2 61 ASP 61 61 61 ASP ASP A . n B 2 62 TYR 62 62 62 TYR TYR A . n B 2 63 ARG 63 63 63 ARG ARG A . n B 2 64 CYS 64 64 64 CYS CYS A . n B 2 65 GLY 65 65 65 GLY GLY A . n B 2 66 VAL 66 66 66 VAL VAL A . n B 2 67 THR 67 67 67 THR THR A . n B 2 68 LYS 68 68 68 LYS LYS A . n B 2 69 LEU 69 69 69 LEU LEU A . n B 2 70 VAL 70 70 70 VAL VAL A . n B 2 71 ASP 71 71 71 ASP ASP A . n B 2 72 ARG 72 72 72 ARG ARG A . n B 2 73 PRO 73 73 73 PRO PRO A . n B 2 74 THR 74 74 74 THR THR A . n B 2 75 VAL 75 75 75 VAL VAL A . n B 2 76 GLN 76 76 76 GLN GLN A . n B 2 77 ALA 77 77 77 ALA ALA A . n B 2 78 ASN 78 78 78 ASN ASN A . n B 2 79 GLU 79 79 79 GLU GLU A . n B 2 80 VAL 80 80 80 VAL VAL A . n B 2 81 SER 81 81 81 SER SER A . n B 2 82 LYS 82 82 82 LYS LYS A . n B 2 83 GLN 83 83 83 GLN GLN A . n B 2 84 GLU 84 84 84 GLU GLU A . n B 2 85 LEU 85 85 85 LEU LEU A . n B 2 86 HIS 86 86 86 HIS HIS A . n B 2 87 ALA 87 87 87 ALA ALA A . n B 2 88 GLY 88 88 88 GLY GLY A . n B 2 89 GLY 89 89 89 GLY GLY A . n B 2 90 ARG 90 90 90 ARG ARG A . n B 2 91 LYS 91 91 91 LYS LYS A . n B 2 92 LEU 92 92 92 LEU LEU A . n B 2 93 ILE 93 93 93 ILE ILE A . n B 2 94 GLU 94 94 94 GLU GLU A . n B 2 95 LYS 95 95 95 LYS LYS A . n B 2 96 ILE 96 96 96 ILE ILE A . n B 2 97 GLU 97 97 97 GLU GLU A . n B 2 98 ASP 98 98 98 ASP ASP A . n B 2 99 TYR 99 99 99 TYR TYR A . n B 2 100 GLN 100 100 100 GLN GLN A . n B 2 101 PRO 101 101 101 PRO PRO A . n B 2 102 GLN 102 102 102 GLN GLN A . n B 2 103 ALA 103 103 103 ALA ALA A . n B 2 104 LEU 104 104 104 LEU LEU A . n B 2 105 ALA 105 105 105 ALA ALA A . n B 2 106 ILE 106 106 106 ILE ILE A . n B 2 107 LEU 107 107 107 LEU LEU A . n B 2 108 GLY 108 108 108 GLY GLY A . n B 2 109 LYS 109 109 109 LYS LYS A . n B 2 110 GLN 110 110 110 GLN GLN A . n B 2 111 ALA 111 111 111 ALA ALA A . n B 2 112 TYR 112 112 112 TYR TYR A . n B 2 113 GLU 113 113 113 GLU GLU A . n B 2 114 GLN 114 114 114 GLN GLN A . n B 2 115 GLY 115 115 115 GLY GLY A . n B 2 116 PHE 116 116 116 PHE PHE A . n B 2 117 SER 117 117 117 SER SER A . n B 2 118 GLN 118 118 118 GLN GLN A . n B 2 119 ARG 119 119 119 ARG ARG A . n B 2 120 GLY 120 120 120 GLY GLY A . n B 2 121 ALA 121 121 121 ALA ALA A . n B 2 122 GLN 122 122 122 GLN GLN A . n B 2 123 TRP 123 123 123 TRP TRP A . n B 2 124 GLY 124 124 124 GLY GLY A . n B 2 125 LYS 125 125 125 LYS LYS A . n B 2 126 GLN 126 126 126 GLN GLN A . n B 2 127 THR 127 127 127 THR THR A . n B 2 128 LEU 128 128 128 LEU LEU A . n B 2 129 THR 129 129 129 THR THR A . n B 2 130 ILE 130 130 130 ILE ILE A . n B 2 131 GLY 131 131 131 GLY GLY A . n B 2 132 SER 132 132 132 SER SER A . n B 2 133 THR 133 133 133 THR THR A . n B 2 134 GLN 134 134 134 GLN GLN A . n B 2 135 ILE 135 135 135 ILE ILE A . n B 2 136 TRP 136 136 136 TRP TRP A . n B 2 137 VAL 137 137 137 VAL VAL A . n B 2 138 LEU 138 138 138 LEU LEU A . n B 2 139 PRO 139 139 139 PRO PRO A . n B 2 140 ASN 140 140 140 ASN ASN A . n B 2 141 PRO 141 141 141 PRO PRO A . n B 2 142 SER 142 142 142 SER SER A . n B 2 143 GLY 143 143 143 GLY GLY A . n B 2 144 LEU 144 144 144 LEU LEU A . n B 2 145 SER 145 145 145 SER SER A . n B 2 146 ARG 146 146 146 ARG ARG A . n B 2 147 VAL 147 147 147 VAL VAL A . n B 2 148 SER 148 148 148 SER SER A . n B 2 149 LEU 149 149 149 LEU LEU A . n B 2 150 GLU 150 150 150 GLU GLU A . n B 2 151 LYS 151 151 151 LYS LYS A . n B 2 152 LEU 152 152 152 LEU LEU A . n B 2 153 VAL 153 153 153 VAL VAL A . n B 2 154 GLU 154 154 154 GLU GLU A . n B 2 155 ALA 155 155 155 ALA ALA A . n B 2 156 TYR 156 156 156 TYR TYR A . n B 2 157 ARG 157 157 157 ARG ARG A . n B 2 158 GLU 158 158 158 GLU GLU A . n B 2 159 LEU 159 159 159 LEU LEU A . n B 2 160 ASP 160 160 160 ASP ASP A . n B 2 161 GLN 161 161 161 GLN GLN A . n B 2 162 ALA 162 162 162 ALA ALA A . n B 2 163 LEU 163 163 163 LEU LEU A . n B 2 164 VAL 164 164 164 VAL VAL A . n B 2 165 VAL 165 165 165 VAL VAL A . n B 2 166 ARG 166 166 ? ? ? A . n B 2 167 GLY 167 167 ? ? ? A . n B 2 168 ARG 168 168 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 26 26 HOH HOH D . C 3 HOH 2 27 27 HOH HOH D . C 3 HOH 3 36 36 HOH HOH D . C 3 HOH 4 38 38 HOH HOH D . C 3 HOH 5 40 40 HOH HOH D . C 3 HOH 6 43 43 HOH HOH D . C 3 HOH 7 44 44 HOH HOH D . C 3 HOH 8 46 46 HOH HOH D . C 3 HOH 9 49 49 HOH HOH D . C 3 HOH 10 61 61 HOH HOH D . C 3 HOH 11 67 67 HOH HOH D . C 3 HOH 12 73 73 HOH HOH D . C 3 HOH 13 77 77 HOH HOH D . C 3 HOH 14 83 83 HOH HOH D . C 3 HOH 15 89 89 HOH HOH D . C 3 HOH 16 94 94 HOH HOH D . C 3 HOH 17 104 104 HOH HOH D . C 3 HOH 18 109 109 HOH HOH D . C 3 HOH 19 112 112 HOH HOH D . C 3 HOH 20 120 120 HOH HOH D . D 3 HOH 1 169 1 HOH HOH A . D 3 HOH 2 170 2 HOH HOH A . D 3 HOH 3 171 3 HOH HOH A . D 3 HOH 4 172 4 HOH HOH A . D 3 HOH 5 173 5 HOH HOH A . D 3 HOH 6 174 6 HOH HOH A . D 3 HOH 7 175 7 HOH HOH A . D 3 HOH 8 176 8 HOH HOH A . D 3 HOH 9 177 9 HOH HOH A . D 3 HOH 10 178 10 HOH HOH A . D 3 HOH 11 179 11 HOH HOH A . D 3 HOH 12 180 12 HOH HOH A . D 3 HOH 13 181 13 HOH HOH A . D 3 HOH 14 182 14 HOH HOH A . D 3 HOH 15 183 15 HOH HOH A . D 3 HOH 16 184 16 HOH HOH A . D 3 HOH 17 185 17 HOH HOH A . D 3 HOH 18 186 18 HOH HOH A . D 3 HOH 19 187 19 HOH HOH A . D 3 HOH 20 188 20 HOH HOH A . D 3 HOH 21 189 21 HOH HOH A . D 3 HOH 22 190 22 HOH HOH A . D 3 HOH 23 191 23 HOH HOH A . D 3 HOH 24 192 24 HOH HOH A . D 3 HOH 25 193 25 HOH HOH A . D 3 HOH 26 194 28 HOH HOH A . D 3 HOH 27 195 29 HOH HOH A . D 3 HOH 28 196 30 HOH HOH A . D 3 HOH 29 197 31 HOH HOH A . D 3 HOH 30 198 32 HOH HOH A . D 3 HOH 31 199 33 HOH HOH A . D 3 HOH 32 200 34 HOH HOH A . D 3 HOH 33 201 35 HOH HOH A . D 3 HOH 34 202 37 HOH HOH A . D 3 HOH 35 203 39 HOH HOH A . D 3 HOH 36 204 41 HOH HOH A . D 3 HOH 37 205 42 HOH HOH A . D 3 HOH 38 206 45 HOH HOH A . D 3 HOH 39 207 47 HOH HOH A . D 3 HOH 40 208 48 HOH HOH A . D 3 HOH 41 209 50 HOH HOH A . D 3 HOH 42 210 51 HOH HOH A . D 3 HOH 43 211 52 HOH HOH A . D 3 HOH 44 212 53 HOH HOH A . D 3 HOH 45 213 54 HOH HOH A . D 3 HOH 46 214 55 HOH HOH A . D 3 HOH 47 215 56 HOH HOH A . D 3 HOH 48 216 57 HOH HOH A . D 3 HOH 49 217 58 HOH HOH A . D 3 HOH 50 218 59 HOH HOH A . D 3 HOH 51 219 60 HOH HOH A . D 3 HOH 52 220 62 HOH HOH A . D 3 HOH 53 221 63 HOH HOH A . D 3 HOH 54 222 64 HOH HOH A . D 3 HOH 55 223 65 HOH HOH A . D 3 HOH 56 224 66 HOH HOH A . D 3 HOH 57 225 68 HOH HOH A . D 3 HOH 58 226 69 HOH HOH A . D 3 HOH 59 227 70 HOH HOH A . D 3 HOH 60 228 71 HOH HOH A . D 3 HOH 61 229 72 HOH HOH A . D 3 HOH 62 230 74 HOH HOH A . D 3 HOH 63 231 75 HOH HOH A . D 3 HOH 64 232 76 HOH HOH A . D 3 HOH 65 233 78 HOH HOH A . D 3 HOH 66 234 79 HOH HOH A . D 3 HOH 67 235 80 HOH HOH A . D 3 HOH 68 236 81 HOH HOH A . D 3 HOH 69 237 82 HOH HOH A . D 3 HOH 70 238 84 HOH HOH A . D 3 HOH 71 239 85 HOH HOH A . D 3 HOH 72 240 86 HOH HOH A . D 3 HOH 73 241 87 HOH HOH A . D 3 HOH 74 242 88 HOH HOH A . D 3 HOH 75 243 90 HOH HOH A . D 3 HOH 76 244 91 HOH HOH A . D 3 HOH 77 245 92 HOH HOH A . D 3 HOH 78 246 93 HOH HOH A . D 3 HOH 79 247 95 HOH HOH A . D 3 HOH 80 248 96 HOH HOH A . D 3 HOH 81 249 97 HOH HOH A . D 3 HOH 82 250 98 HOH HOH A . D 3 HOH 83 251 99 HOH HOH A . D 3 HOH 84 252 100 HOH HOH A . D 3 HOH 85 253 101 HOH HOH A . D 3 HOH 86 254 102 HOH HOH A . D 3 HOH 87 255 103 HOH HOH A . D 3 HOH 88 256 105 HOH HOH A . D 3 HOH 89 257 106 HOH HOH A . D 3 HOH 90 258 107 HOH HOH A . D 3 HOH 91 259 108 HOH HOH A . D 3 HOH 92 260 110 HOH HOH A . D 3 HOH 93 261 111 HOH HOH A . D 3 HOH 94 262 113 HOH HOH A . D 3 HOH 95 263 114 HOH HOH A . D 3 HOH 96 264 115 HOH HOH A . D 3 HOH 97 265 116 HOH HOH A . D 3 HOH 98 266 117 HOH HOH A . D 3 HOH 99 267 118 HOH HOH A . D 3 HOH 100 268 119 HOH HOH A . D 3 HOH 101 269 121 HOH HOH A . D 3 HOH 102 270 122 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? B MET 1 CG 2 1 Y 1 A MET 1 ? SD ? B MET 1 SD 3 1 Y 1 A MET 1 ? CE ? B MET 1 CE 4 1 Y 1 A LYS 109 ? CG ? B LYS 109 CG 5 1 Y 1 A LYS 109 ? CD ? B LYS 109 CD 6 1 Y 1 A LYS 109 ? CE ? B LYS 109 CE 7 1 Y 1 A LYS 109 ? NZ ? B LYS 109 NZ 8 1 Y 1 A ARG 119 ? CG ? B ARG 119 CG 9 1 Y 1 A ARG 119 ? CD ? B ARG 119 CD 10 1 Y 1 A ARG 119 ? NE ? B ARG 119 NE 11 1 Y 1 A ARG 119 ? CZ ? B ARG 119 CZ 12 1 Y 1 A ARG 119 ? NH1 ? B ARG 119 NH1 13 1 Y 1 A ARG 119 ? NH2 ? B ARG 119 NH2 14 1 Y 1 A GLU 150 ? CG ? B GLU 150 CG 15 1 Y 1 A GLU 150 ? CD ? B GLU 150 CD 16 1 Y 1 A GLU 150 ? OE1 ? B GLU 150 OE1 17 1 Y 1 A GLU 150 ? OE2 ? B GLU 150 OE2 18 1 Y 1 A LYS 151 ? CG ? B LYS 151 CG 19 1 Y 1 A LYS 151 ? CD ? B LYS 151 CD 20 1 Y 1 A LYS 151 ? CE ? B LYS 151 CE 21 1 Y 1 A LYS 151 ? NZ ? B LYS 151 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.851 ? 4 # _cell.entry_id 1MWI _cell.length_a 101.350 _cell.length_b 101.350 _cell.length_c 45.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1MWI _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1MWI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.25 _exptl_crystal.density_Matthews 2.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details 'PEG 4000, Sodium acetate,, pH 4.6, Microbatch, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 'Sodium acetate' ? ? ? 1 3 2 'Sodium acetate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-08-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.488 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX7.2' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX7.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.488 # _reflns.entry_id 1MWI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.35 _reflns.number_obs 10144 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 15 _reflns.B_iso_Wilson_estimate 37.3 _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs 0.2 _reflns_shell.pdbx_Rsym_value 0.2 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1MWI _refine.ls_number_reflns_obs 9878 _refine.ls_number_reflns_all 10144 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1604690.93 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 14.93 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.2482 _refine.ls_R_factor_all 0.2482 _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 477 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.4 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;NO ELECTRON DENSITY IS OBSERVED FOR RESDUES 166 TO 168. RESIDUES A1, A109, A150 AND A151 WERE REFINED AS ALANINE. D1P CORRESPONDS TO AN ABASIC SITE ; _refine.pdbx_starting_model 'Native MUG' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1MWI _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1271 _refine_hist.pdbx_number_atoms_nucleic_acid 236 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 1629 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 14.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 26.5 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.19 ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.62 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.53 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.50 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.80 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.35 _refine_ls_shell.d_res_low 2.50 _refine_ls_shell.number_reflns_R_work 1102 _refine_ls_shell.R_factor_R_work 0.28 _refine_ls_shell.percent_reflns_obs 95.1 _refine_ls_shell.R_factor_R_free 0.29 _refine_ls_shell.R_factor_R_free_error 0.042 _refine_ls_shell.percent_reflns_R_free 5.3 _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 WATER.PAR WATER.TOP 'X-RAY DIFFRACTION' 3 DNA2.PAR DNA2.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1MWI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MWI _struct.title 'Crystal structure of a MUG-DNA product complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MWI _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA-glycosylase, nucleotide flipping, abasic site, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP MUG_ECOLI P0A9H1 2 1 ? ? 2 PDB 1MWI 1MWI 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MWI A 1 ? 168 ? P0A9H1 1 ? 168 ? 1 168 2 2 1MWI D 1 ? 12 ? 1MWI 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;One asymmetric unit consists of a single protein molecule and 1 strand of DNA. The second strand is generated by x,y,-z (translation 0,0,1) applied to APR,THY,CYT,GUA, CYT,GUA and x,y,-z (translation 0,0,2) applied to the remaining nucleic acids. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY B 20 ? GLY B 27 ? GLY A 20 GLY A 27 1 ? 8 HELX_P HELX_P2 2 ARG B 36 ? ALA B 44 ? ARG A 36 ALA A 44 1 ? 9 HELX_P HELX_P3 3 LYS B 52 ? TYR B 62 ? LYS A 52 TYR A 62 5 ? 11 HELX_P HELX_P4 4 GLN B 76 ? VAL B 80 ? GLN A 76 VAL A 80 5 ? 5 HELX_P HELX_P5 5 SER B 81 ? GLN B 100 ? SER A 81 GLN A 100 1 ? 20 HELX_P HELX_P6 6 GLY B 108 ? SER B 117 ? GLY A 108 SER A 117 1 ? 10 HELX_P HELX_P7 7 SER B 148 ? LEU B 163 ? SER A 148 LEU A 163 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 6 "O3'" ? ? ? 1_555 A AAB 7 P ? ? D DG 6 D AAB 7 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale2 covale one ? A AAB 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? D AAB 7 D DT 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? D DC 1 D DG 6 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? D DC 1 D DG 6 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? D DC 1 D DG 6 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DA 5 N6 ? ? D DG 2 D DA 5 7_557 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog5 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 4 N1 ? ? D DC 3 D DG 4 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 4 O6 ? ? D DC 3 D DG 4 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 4 N2 ? ? D DC 3 D DG 4 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? D DG 4 D DC 3 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? D DG 4 D DC 3 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? D DG 4 D DC 3 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DG 2 O6 ? ? D DA 5 D DG 2 7_557 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? D DG 6 D DC 1 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? D DG 6 D DC 1 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? D DG 6 D DC 1 7_557 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS B 64 ? LYS B 68 ? CYS A 64 LYS A 68 A 2 VAL B 12 ? GLY B 16 ? VAL A 12 GLY A 16 A 3 ALA B 103 ? LEU B 107 ? ALA A 103 LEU A 107 A 4 THR B 133 ? LEU B 138 ? THR A 133 LEU A 138 A 5 GLY B 124 ? ILE B 130 ? GLY A 124 ILE A 130 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY B 65 ? O GLY A 65 N PHE B 14 ? N PHE A 14 A 2 3 N VAL B 13 ? N VAL A 13 O ALA B 105 ? O ALA A 105 A 3 4 N ILE B 106 ? N ILE A 106 O TRP B 136 ? O TRP A 136 A 4 5 O VAL B 137 ? O VAL A 137 N GLY B 124 ? N GLY A 124 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" D DA 5 ? ? "C2'" D DA 5 ? ? 1.451 1.516 -0.065 0.008 N 2 1 "C5'" D DG 6 ? ? "C4'" D DG 6 ? ? 1.558 1.512 0.046 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 110.49 108.30 2.19 0.30 N 2 1 "O4'" D DA 5 ? ? "C1'" D DA 5 ? ? N9 D DA 5 ? ? 111.88 108.30 3.58 0.30 N 3 1 "O4'" D DG 6 ? ? "C1'" D DG 6 ? ? N9 D DG 6 ? ? 110.48 108.30 2.18 0.30 N 4 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? N1 D DC 11 ? ? 111.07 108.30 2.77 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 164 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -59.24 _pdbx_validate_torsion.psi 170.53 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). The second strand of the DNA molecule is generated by applying symmetry operator 7_556 : y, x, 1-z, to D1P and bases 8-12, and applying symmetry operator 7_557 : y, x, 2-z, to bases 1-6. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 166 ? B ARG 166 2 1 Y 1 A GLY 167 ? B GLY 167 3 1 Y 1 A ARG 168 ? B ARG 168 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AAB P P N N 1 AAB O1P O N N 2 AAB O2P O N N 3 AAB O3P O N N 4 AAB "O5'" O N N 5 AAB "C5'" C N N 6 AAB "C4'" C N R 7 AAB "O4'" O N N 8 AAB "C1'" C N R 9 AAB "O1'" O N N 10 AAB "C2'" C N N 11 AAB "C3'" C N S 12 AAB "O3'" O N N 13 AAB H1P H N N 14 AAB H3P H N N 15 AAB "H5'1" H N N 16 AAB "H5'2" H N N 17 AAB "H4'" H N N 18 AAB "H1'" H N N 19 AAB "HO1'" H N N 20 AAB "H2'1" H N N 21 AAB "H2'2" H N N 22 AAB "H3'" H N N 23 AAB "HO3'" H N N 24 ALA N N N N 25 ALA CA C N S 26 ALA C C N N 27 ALA O O N N 28 ALA CB C N N 29 ALA OXT O N N 30 ALA H H N N 31 ALA H2 H N N 32 ALA HA H N N 33 ALA HB1 H N N 34 ALA HB2 H N N 35 ALA HB3 H N N 36 ALA HXT H N N 37 ARG N N N N 38 ARG CA C N S 39 ARG C C N N 40 ARG O O N N 41 ARG CB C N N 42 ARG CG C N N 43 ARG CD C N N 44 ARG NE N N N 45 ARG CZ C N N 46 ARG NH1 N N N 47 ARG NH2 N N N 48 ARG OXT O N N 49 ARG H H N N 50 ARG H2 H N N 51 ARG HA H N N 52 ARG HB2 H N N 53 ARG HB3 H N N 54 ARG HG2 H N N 55 ARG HG3 H N N 56 ARG HD2 H N N 57 ARG HD3 H N N 58 ARG HE H N N 59 ARG HH11 H N N 60 ARG HH12 H N N 61 ARG HH21 H N N 62 ARG HH22 H N N 63 ARG HXT H N N 64 ASN N N N N 65 ASN CA C N S 66 ASN C C N N 67 ASN O O N N 68 ASN CB C N N 69 ASN CG C N N 70 ASN OD1 O N N 71 ASN ND2 N N N 72 ASN OXT O N N 73 ASN H H N N 74 ASN H2 H N N 75 ASN HA H N N 76 ASN HB2 H N N 77 ASN HB3 H N N 78 ASN HD21 H N N 79 ASN HD22 H N N 80 ASN HXT H N N 81 ASP N N N N 82 ASP CA C N S 83 ASP C C N N 84 ASP O O N N 85 ASP CB C N N 86 ASP CG C N N 87 ASP OD1 O N N 88 ASP OD2 O N N 89 ASP OXT O N N 90 ASP H H N N 91 ASP H2 H N N 92 ASP HA H N N 93 ASP HB2 H N N 94 ASP HB3 H N N 95 ASP HD2 H N N 96 ASP HXT H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 DA OP3 O N N 112 DA P P N N 113 DA OP1 O N N 114 DA OP2 O N N 115 DA "O5'" O N N 116 DA "C5'" C N N 117 DA "C4'" C N R 118 DA "O4'" O N N 119 DA "C3'" C N S 120 DA "O3'" O N N 121 DA "C2'" C N N 122 DA "C1'" C N R 123 DA N9 N Y N 124 DA C8 C Y N 125 DA N7 N Y N 126 DA C5 C Y N 127 DA C6 C Y N 128 DA N6 N N N 129 DA N1 N Y N 130 DA C2 C Y N 131 DA N3 N Y N 132 DA C4 C Y N 133 DA HOP3 H N N 134 DA HOP2 H N N 135 DA "H5'" H N N 136 DA "H5''" H N N 137 DA "H4'" H N N 138 DA "H3'" H N N 139 DA "HO3'" H N N 140 DA "H2'" H N N 141 DA "H2''" H N N 142 DA "H1'" H N N 143 DA H8 H N N 144 DA H61 H N N 145 DA H62 H N N 146 DA H2 H N N 147 DC OP3 O N N 148 DC P P N N 149 DC OP1 O N N 150 DC OP2 O N N 151 DC "O5'" O N N 152 DC "C5'" C N N 153 DC "C4'" C N R 154 DC "O4'" O N N 155 DC "C3'" C N S 156 DC "O3'" O N N 157 DC "C2'" C N N 158 DC "C1'" C N R 159 DC N1 N N N 160 DC C2 C N N 161 DC O2 O N N 162 DC N3 N N N 163 DC C4 C N N 164 DC N4 N N N 165 DC C5 C N N 166 DC C6 C N N 167 DC HOP3 H N N 168 DC HOP2 H N N 169 DC "H5'" H N N 170 DC "H5''" H N N 171 DC "H4'" H N N 172 DC "H3'" H N N 173 DC "HO3'" H N N 174 DC "H2'" H N N 175 DC "H2''" H N N 176 DC "H1'" H N N 177 DC H41 H N N 178 DC H42 H N N 179 DC H5 H N N 180 DC H6 H N N 181 DG OP3 O N N 182 DG P P N N 183 DG OP1 O N N 184 DG OP2 O N N 185 DG "O5'" O N N 186 DG "C5'" C N N 187 DG "C4'" C N R 188 DG "O4'" O N N 189 DG "C3'" C N S 190 DG "O3'" O N N 191 DG "C2'" C N N 192 DG "C1'" C N R 193 DG N9 N Y N 194 DG C8 C Y N 195 DG N7 N Y N 196 DG C5 C Y N 197 DG C6 C N N 198 DG O6 O N N 199 DG N1 N N N 200 DG C2 C N N 201 DG N2 N N N 202 DG N3 N N N 203 DG C4 C Y N 204 DG HOP3 H N N 205 DG HOP2 H N N 206 DG "H5'" H N N 207 DG "H5''" H N N 208 DG "H4'" H N N 209 DG "H3'" H N N 210 DG "HO3'" H N N 211 DG "H2'" H N N 212 DG "H2''" H N N 213 DG "H1'" H N N 214 DG H8 H N N 215 DG H1 H N N 216 DG H21 H N N 217 DG H22 H N N 218 DT OP3 O N N 219 DT P P N N 220 DT OP1 O N N 221 DT OP2 O N N 222 DT "O5'" O N N 223 DT "C5'" C N N 224 DT "C4'" C N R 225 DT "O4'" O N N 226 DT "C3'" C N S 227 DT "O3'" O N N 228 DT "C2'" C N N 229 DT "C1'" C N R 230 DT N1 N N N 231 DT C2 C N N 232 DT O2 O N N 233 DT N3 N N N 234 DT C4 C N N 235 DT O4 O N N 236 DT C5 C N N 237 DT C7 C N N 238 DT C6 C N N 239 DT HOP3 H N N 240 DT HOP2 H N N 241 DT "H5'" H N N 242 DT "H5''" H N N 243 DT "H4'" H N N 244 DT "H3'" H N N 245 DT "HO3'" H N N 246 DT "H2'" H N N 247 DT "H2''" H N N 248 DT "H1'" H N N 249 DT H3 H N N 250 DT H71 H N N 251 DT H72 H N N 252 DT H73 H N N 253 DT H6 H N N 254 GLN N N N N 255 GLN CA C N S 256 GLN C C N N 257 GLN O O N N 258 GLN CB C N N 259 GLN CG C N N 260 GLN CD C N N 261 GLN OE1 O N N 262 GLN NE2 N N N 263 GLN OXT O N N 264 GLN H H N N 265 GLN H2 H N N 266 GLN HA H N N 267 GLN HB2 H N N 268 GLN HB3 H N N 269 GLN HG2 H N N 270 GLN HG3 H N N 271 GLN HE21 H N N 272 GLN HE22 H N N 273 GLN HXT H N N 274 GLU N N N N 275 GLU CA C N S 276 GLU C C N N 277 GLU O O N N 278 GLU CB C N N 279 GLU CG C N N 280 GLU CD C N N 281 GLU OE1 O N N 282 GLU OE2 O N N 283 GLU OXT O N N 284 GLU H H N N 285 GLU H2 H N N 286 GLU HA H N N 287 GLU HB2 H N N 288 GLU HB3 H N N 289 GLU HG2 H N N 290 GLU HG3 H N N 291 GLU HE2 H N N 292 GLU HXT H N N 293 GLY N N N N 294 GLY CA C N N 295 GLY C C N N 296 GLY O O N N 297 GLY OXT O N N 298 GLY H H N N 299 GLY H2 H N N 300 GLY HA2 H N N 301 GLY HA3 H N N 302 GLY HXT H N N 303 HIS N N N N 304 HIS CA C N S 305 HIS C C N N 306 HIS O O N N 307 HIS CB C N N 308 HIS CG C Y N 309 HIS ND1 N Y N 310 HIS CD2 C Y N 311 HIS CE1 C Y N 312 HIS NE2 N Y N 313 HIS OXT O N N 314 HIS H H N N 315 HIS H2 H N N 316 HIS HA H N N 317 HIS HB2 H N N 318 HIS HB3 H N N 319 HIS HD1 H N N 320 HIS HD2 H N N 321 HIS HE1 H N N 322 HIS HE2 H N N 323 HIS HXT H N N 324 HOH O O N N 325 HOH H1 H N N 326 HOH H2 H N N 327 ILE N N N N 328 ILE CA C N S 329 ILE C C N N 330 ILE O O N N 331 ILE CB C N S 332 ILE CG1 C N N 333 ILE CG2 C N N 334 ILE CD1 C N N 335 ILE OXT O N N 336 ILE H H N N 337 ILE H2 H N N 338 ILE HA H N N 339 ILE HB H N N 340 ILE HG12 H N N 341 ILE HG13 H N N 342 ILE HG21 H N N 343 ILE HG22 H N N 344 ILE HG23 H N N 345 ILE HD11 H N N 346 ILE HD12 H N N 347 ILE HD13 H N N 348 ILE HXT H N N 349 LEU N N N N 350 LEU CA C N S 351 LEU C C N N 352 LEU O O N N 353 LEU CB C N N 354 LEU CG C N N 355 LEU CD1 C N N 356 LEU CD2 C N N 357 LEU OXT O N N 358 LEU H H N N 359 LEU H2 H N N 360 LEU HA H N N 361 LEU HB2 H N N 362 LEU HB3 H N N 363 LEU HG H N N 364 LEU HD11 H N N 365 LEU HD12 H N N 366 LEU HD13 H N N 367 LEU HD21 H N N 368 LEU HD22 H N N 369 LEU HD23 H N N 370 LEU HXT H N N 371 LYS N N N N 372 LYS CA C N S 373 LYS C C N N 374 LYS O O N N 375 LYS CB C N N 376 LYS CG C N N 377 LYS CD C N N 378 LYS CE C N N 379 LYS NZ N N N 380 LYS OXT O N N 381 LYS H H N N 382 LYS H2 H N N 383 LYS HA H N N 384 LYS HB2 H N N 385 LYS HB3 H N N 386 LYS HG2 H N N 387 LYS HG3 H N N 388 LYS HD2 H N N 389 LYS HD3 H N N 390 LYS HE2 H N N 391 LYS HE3 H N N 392 LYS HZ1 H N N 393 LYS HZ2 H N N 394 LYS HZ3 H N N 395 LYS HXT H N N 396 MET N N N N 397 MET CA C N S 398 MET C C N N 399 MET O O N N 400 MET CB C N N 401 MET CG C N N 402 MET SD S N N 403 MET CE C N N 404 MET OXT O N N 405 MET H H N N 406 MET H2 H N N 407 MET HA H N N 408 MET HB2 H N N 409 MET HB3 H N N 410 MET HG2 H N N 411 MET HG3 H N N 412 MET HE1 H N N 413 MET HE2 H N N 414 MET HE3 H N N 415 MET HXT H N N 416 PHE N N N N 417 PHE CA C N S 418 PHE C C N N 419 PHE O O N N 420 PHE CB C N N 421 PHE CG C Y N 422 PHE CD1 C Y N 423 PHE CD2 C Y N 424 PHE CE1 C Y N 425 PHE CE2 C Y N 426 PHE CZ C Y N 427 PHE OXT O N N 428 PHE H H N N 429 PHE H2 H N N 430 PHE HA H N N 431 PHE HB2 H N N 432 PHE HB3 H N N 433 PHE HD1 H N N 434 PHE HD2 H N N 435 PHE HE1 H N N 436 PHE HE2 H N N 437 PHE HZ H N N 438 PHE HXT H N N 439 PRO N N N N 440 PRO CA C N S 441 PRO C C N N 442 PRO O O N N 443 PRO CB C N N 444 PRO CG C N N 445 PRO CD C N N 446 PRO OXT O N N 447 PRO H H N N 448 PRO HA H N N 449 PRO HB2 H N N 450 PRO HB3 H N N 451 PRO HG2 H N N 452 PRO HG3 H N N 453 PRO HD2 H N N 454 PRO HD3 H N N 455 PRO HXT H N N 456 SER N N N N 457 SER CA C N S 458 SER C C N N 459 SER O O N N 460 SER CB C N N 461 SER OG O N N 462 SER OXT O N N 463 SER H H N N 464 SER H2 H N N 465 SER HA H N N 466 SER HB2 H N N 467 SER HB3 H N N 468 SER HG H N N 469 SER HXT H N N 470 THR N N N N 471 THR CA C N S 472 THR C C N N 473 THR O O N N 474 THR CB C N R 475 THR OG1 O N N 476 THR CG2 C N N 477 THR OXT O N N 478 THR H H N N 479 THR H2 H N N 480 THR HA H N N 481 THR HB H N N 482 THR HG1 H N N 483 THR HG21 H N N 484 THR HG22 H N N 485 THR HG23 H N N 486 THR HXT H N N 487 TRP N N N N 488 TRP CA C N S 489 TRP C C N N 490 TRP O O N N 491 TRP CB C N N 492 TRP CG C Y N 493 TRP CD1 C Y N 494 TRP CD2 C Y N 495 TRP NE1 N Y N 496 TRP CE2 C Y N 497 TRP CE3 C Y N 498 TRP CZ2 C Y N 499 TRP CZ3 C Y N 500 TRP CH2 C Y N 501 TRP OXT O N N 502 TRP H H N N 503 TRP H2 H N N 504 TRP HA H N N 505 TRP HB2 H N N 506 TRP HB3 H N N 507 TRP HD1 H N N 508 TRP HE1 H N N 509 TRP HE3 H N N 510 TRP HZ2 H N N 511 TRP HZ3 H N N 512 TRP HH2 H N N 513 TRP HXT H N N 514 TYR N N N N 515 TYR CA C N S 516 TYR C C N N 517 TYR O O N N 518 TYR CB C N N 519 TYR CG C Y N 520 TYR CD1 C Y N 521 TYR CD2 C Y N 522 TYR CE1 C Y N 523 TYR CE2 C Y N 524 TYR CZ C Y N 525 TYR OH O N N 526 TYR OXT O N N 527 TYR H H N N 528 TYR H2 H N N 529 TYR HA H N N 530 TYR HB2 H N N 531 TYR HB3 H N N 532 TYR HD1 H N N 533 TYR HD2 H N N 534 TYR HE1 H N N 535 TYR HE2 H N N 536 TYR HH H N N 537 TYR HXT H N N 538 VAL N N N N 539 VAL CA C N S 540 VAL C C N N 541 VAL O O N N 542 VAL CB C N N 543 VAL CG1 C N N 544 VAL CG2 C N N 545 VAL OXT O N N 546 VAL H H N N 547 VAL H2 H N N 548 VAL HA H N N 549 VAL HB H N N 550 VAL HG11 H N N 551 VAL HG12 H N N 552 VAL HG13 H N N 553 VAL HG21 H N N 554 VAL HG22 H N N 555 VAL HG23 H N N 556 VAL HXT H N N 557 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AAB P O1P sing N N 1 AAB P O2P doub N N 2 AAB P O3P sing N N 3 AAB P "O5'" sing N N 4 AAB O1P H1P sing N N 5 AAB O3P H3P sing N N 6 AAB "O5'" "C5'" sing N N 7 AAB "C5'" "C4'" sing N N 8 AAB "C5'" "H5'1" sing N N 9 AAB "C5'" "H5'2" sing N N 10 AAB "C4'" "O4'" sing N N 11 AAB "C4'" "C3'" sing N N 12 AAB "C4'" "H4'" sing N N 13 AAB "O4'" "C1'" sing N N 14 AAB "C1'" "O1'" sing N N 15 AAB "C1'" "C2'" sing N N 16 AAB "C1'" "H1'" sing N N 17 AAB "O1'" "HO1'" sing N N 18 AAB "C2'" "C3'" sing N N 19 AAB "C2'" "H2'1" sing N N 20 AAB "C2'" "H2'2" sing N N 21 AAB "C3'" "O3'" sing N N 22 AAB "C3'" "H3'" sing N N 23 AAB "O3'" "HO3'" sing N N 24 ALA N CA sing N N 25 ALA N H sing N N 26 ALA N H2 sing N N 27 ALA CA C sing N N 28 ALA CA CB sing N N 29 ALA CA HA sing N N 30 ALA C O doub N N 31 ALA C OXT sing N N 32 ALA CB HB1 sing N N 33 ALA CB HB2 sing N N 34 ALA CB HB3 sing N N 35 ALA OXT HXT sing N N 36 ARG N CA sing N N 37 ARG N H sing N N 38 ARG N H2 sing N N 39 ARG CA C sing N N 40 ARG CA CB sing N N 41 ARG CA HA sing N N 42 ARG C O doub N N 43 ARG C OXT sing N N 44 ARG CB CG sing N N 45 ARG CB HB2 sing N N 46 ARG CB HB3 sing N N 47 ARG CG CD sing N N 48 ARG CG HG2 sing N N 49 ARG CG HG3 sing N N 50 ARG CD NE sing N N 51 ARG CD HD2 sing N N 52 ARG CD HD3 sing N N 53 ARG NE CZ sing N N 54 ARG NE HE sing N N 55 ARG CZ NH1 sing N N 56 ARG CZ NH2 doub N N 57 ARG NH1 HH11 sing N N 58 ARG NH1 HH12 sing N N 59 ARG NH2 HH21 sing N N 60 ARG NH2 HH22 sing N N 61 ARG OXT HXT sing N N 62 ASN N CA sing N N 63 ASN N H sing N N 64 ASN N H2 sing N N 65 ASN CA C sing N N 66 ASN CA CB sing N N 67 ASN CA HA sing N N 68 ASN C O doub N N 69 ASN C OXT sing N N 70 ASN CB CG sing N N 71 ASN CB HB2 sing N N 72 ASN CB HB3 sing N N 73 ASN CG OD1 doub N N 74 ASN CG ND2 sing N N 75 ASN ND2 HD21 sing N N 76 ASN ND2 HD22 sing N N 77 ASN OXT HXT sing N N 78 ASP N CA sing N N 79 ASP N H sing N N 80 ASP N H2 sing N N 81 ASP CA C sing N N 82 ASP CA CB sing N N 83 ASP CA HA sing N N 84 ASP C O doub N N 85 ASP C OXT sing N N 86 ASP CB CG sing N N 87 ASP CB HB2 sing N N 88 ASP CB HB3 sing N N 89 ASP CG OD1 doub N N 90 ASP CG OD2 sing N N 91 ASP OD2 HD2 sing N N 92 ASP OXT HXT sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 DA OP3 P sing N N 107 DA OP3 HOP3 sing N N 108 DA P OP1 doub N N 109 DA P OP2 sing N N 110 DA P "O5'" sing N N 111 DA OP2 HOP2 sing N N 112 DA "O5'" "C5'" sing N N 113 DA "C5'" "C4'" sing N N 114 DA "C5'" "H5'" sing N N 115 DA "C5'" "H5''" sing N N 116 DA "C4'" "O4'" sing N N 117 DA "C4'" "C3'" sing N N 118 DA "C4'" "H4'" sing N N 119 DA "O4'" "C1'" sing N N 120 DA "C3'" "O3'" sing N N 121 DA "C3'" "C2'" sing N N 122 DA "C3'" "H3'" sing N N 123 DA "O3'" "HO3'" sing N N 124 DA "C2'" "C1'" sing N N 125 DA "C2'" "H2'" sing N N 126 DA "C2'" "H2''" sing N N 127 DA "C1'" N9 sing N N 128 DA "C1'" "H1'" sing N N 129 DA N9 C8 sing Y N 130 DA N9 C4 sing Y N 131 DA C8 N7 doub Y N 132 DA C8 H8 sing N N 133 DA N7 C5 sing Y N 134 DA C5 C6 sing Y N 135 DA C5 C4 doub Y N 136 DA C6 N6 sing N N 137 DA C6 N1 doub Y N 138 DA N6 H61 sing N N 139 DA N6 H62 sing N N 140 DA N1 C2 sing Y N 141 DA C2 N3 doub Y N 142 DA C2 H2 sing N N 143 DA N3 C4 sing Y N 144 DC OP3 P sing N N 145 DC OP3 HOP3 sing N N 146 DC P OP1 doub N N 147 DC P OP2 sing N N 148 DC P "O5'" sing N N 149 DC OP2 HOP2 sing N N 150 DC "O5'" "C5'" sing N N 151 DC "C5'" "C4'" sing N N 152 DC "C5'" "H5'" sing N N 153 DC "C5'" "H5''" sing N N 154 DC "C4'" "O4'" sing N N 155 DC "C4'" "C3'" sing N N 156 DC "C4'" "H4'" sing N N 157 DC "O4'" "C1'" sing N N 158 DC "C3'" "O3'" sing N N 159 DC "C3'" "C2'" sing N N 160 DC "C3'" "H3'" sing N N 161 DC "O3'" "HO3'" sing N N 162 DC "C2'" "C1'" sing N N 163 DC "C2'" "H2'" sing N N 164 DC "C2'" "H2''" sing N N 165 DC "C1'" N1 sing N N 166 DC "C1'" "H1'" sing N N 167 DC N1 C2 sing N N 168 DC N1 C6 sing N N 169 DC C2 O2 doub N N 170 DC C2 N3 sing N N 171 DC N3 C4 doub N N 172 DC C4 N4 sing N N 173 DC C4 C5 sing N N 174 DC N4 H41 sing N N 175 DC N4 H42 sing N N 176 DC C5 C6 doub N N 177 DC C5 H5 sing N N 178 DC C6 H6 sing N N 179 DG OP3 P sing N N 180 DG OP3 HOP3 sing N N 181 DG P OP1 doub N N 182 DG P OP2 sing N N 183 DG P "O5'" sing N N 184 DG OP2 HOP2 sing N N 185 DG "O5'" "C5'" sing N N 186 DG "C5'" "C4'" sing N N 187 DG "C5'" "H5'" sing N N 188 DG "C5'" "H5''" sing N N 189 DG "C4'" "O4'" sing N N 190 DG "C4'" "C3'" sing N N 191 DG "C4'" "H4'" sing N N 192 DG "O4'" "C1'" sing N N 193 DG "C3'" "O3'" sing N N 194 DG "C3'" "C2'" sing N N 195 DG "C3'" "H3'" sing N N 196 DG "O3'" "HO3'" sing N N 197 DG "C2'" "C1'" sing N N 198 DG "C2'" "H2'" sing N N 199 DG "C2'" "H2''" sing N N 200 DG "C1'" N9 sing N N 201 DG "C1'" "H1'" sing N N 202 DG N9 C8 sing Y N 203 DG N9 C4 sing Y N 204 DG C8 N7 doub Y N 205 DG C8 H8 sing N N 206 DG N7 C5 sing Y N 207 DG C5 C6 sing N N 208 DG C5 C4 doub Y N 209 DG C6 O6 doub N N 210 DG C6 N1 sing N N 211 DG N1 C2 sing N N 212 DG N1 H1 sing N N 213 DG C2 N2 sing N N 214 DG C2 N3 doub N N 215 DG N2 H21 sing N N 216 DG N2 H22 sing N N 217 DG N3 C4 sing N N 218 DT OP3 P sing N N 219 DT OP3 HOP3 sing N N 220 DT P OP1 doub N N 221 DT P OP2 sing N N 222 DT P "O5'" sing N N 223 DT OP2 HOP2 sing N N 224 DT "O5'" "C5'" sing N N 225 DT "C5'" "C4'" sing N N 226 DT "C5'" "H5'" sing N N 227 DT "C5'" "H5''" sing N N 228 DT "C4'" "O4'" sing N N 229 DT "C4'" "C3'" sing N N 230 DT "C4'" "H4'" sing N N 231 DT "O4'" "C1'" sing N N 232 DT "C3'" "O3'" sing N N 233 DT "C3'" "C2'" sing N N 234 DT "C3'" "H3'" sing N N 235 DT "O3'" "HO3'" sing N N 236 DT "C2'" "C1'" sing N N 237 DT "C2'" "H2'" sing N N 238 DT "C2'" "H2''" sing N N 239 DT "C1'" N1 sing N N 240 DT "C1'" "H1'" sing N N 241 DT N1 C2 sing N N 242 DT N1 C6 sing N N 243 DT C2 O2 doub N N 244 DT C2 N3 sing N N 245 DT N3 C4 sing N N 246 DT N3 H3 sing N N 247 DT C4 O4 doub N N 248 DT C4 C5 sing N N 249 DT C5 C7 sing N N 250 DT C5 C6 doub N N 251 DT C7 H71 sing N N 252 DT C7 H72 sing N N 253 DT C7 H73 sing N N 254 DT C6 H6 sing N N 255 GLN N CA sing N N 256 GLN N H sing N N 257 GLN N H2 sing N N 258 GLN CA C sing N N 259 GLN CA CB sing N N 260 GLN CA HA sing N N 261 GLN C O doub N N 262 GLN C OXT sing N N 263 GLN CB CG sing N N 264 GLN CB HB2 sing N N 265 GLN CB HB3 sing N N 266 GLN CG CD sing N N 267 GLN CG HG2 sing N N 268 GLN CG HG3 sing N N 269 GLN CD OE1 doub N N 270 GLN CD NE2 sing N N 271 GLN NE2 HE21 sing N N 272 GLN NE2 HE22 sing N N 273 GLN OXT HXT sing N N 274 GLU N CA sing N N 275 GLU N H sing N N 276 GLU N H2 sing N N 277 GLU CA C sing N N 278 GLU CA CB sing N N 279 GLU CA HA sing N N 280 GLU C O doub N N 281 GLU C OXT sing N N 282 GLU CB CG sing N N 283 GLU CB HB2 sing N N 284 GLU CB HB3 sing N N 285 GLU CG CD sing N N 286 GLU CG HG2 sing N N 287 GLU CG HG3 sing N N 288 GLU CD OE1 doub N N 289 GLU CD OE2 sing N N 290 GLU OE2 HE2 sing N N 291 GLU OXT HXT sing N N 292 GLY N CA sing N N 293 GLY N H sing N N 294 GLY N H2 sing N N 295 GLY CA C sing N N 296 GLY CA HA2 sing N N 297 GLY CA HA3 sing N N 298 GLY C O doub N N 299 GLY C OXT sing N N 300 GLY OXT HXT sing N N 301 HIS N CA sing N N 302 HIS N H sing N N 303 HIS N H2 sing N N 304 HIS CA C sing N N 305 HIS CA CB sing N N 306 HIS CA HA sing N N 307 HIS C O doub N N 308 HIS C OXT sing N N 309 HIS CB CG sing N N 310 HIS CB HB2 sing N N 311 HIS CB HB3 sing N N 312 HIS CG ND1 sing Y N 313 HIS CG CD2 doub Y N 314 HIS ND1 CE1 doub Y N 315 HIS ND1 HD1 sing N N 316 HIS CD2 NE2 sing Y N 317 HIS CD2 HD2 sing N N 318 HIS CE1 NE2 sing Y N 319 HIS CE1 HE1 sing N N 320 HIS NE2 HE2 sing N N 321 HIS OXT HXT sing N N 322 HOH O H1 sing N N 323 HOH O H2 sing N N 324 ILE N CA sing N N 325 ILE N H sing N N 326 ILE N H2 sing N N 327 ILE CA C sing N N 328 ILE CA CB sing N N 329 ILE CA HA sing N N 330 ILE C O doub N N 331 ILE C OXT sing N N 332 ILE CB CG1 sing N N 333 ILE CB CG2 sing N N 334 ILE CB HB sing N N 335 ILE CG1 CD1 sing N N 336 ILE CG1 HG12 sing N N 337 ILE CG1 HG13 sing N N 338 ILE CG2 HG21 sing N N 339 ILE CG2 HG22 sing N N 340 ILE CG2 HG23 sing N N 341 ILE CD1 HD11 sing N N 342 ILE CD1 HD12 sing N N 343 ILE CD1 HD13 sing N N 344 ILE OXT HXT sing N N 345 LEU N CA sing N N 346 LEU N H sing N N 347 LEU N H2 sing N N 348 LEU CA C sing N N 349 LEU CA CB sing N N 350 LEU CA HA sing N N 351 LEU C O doub N N 352 LEU C OXT sing N N 353 LEU CB CG sing N N 354 LEU CB HB2 sing N N 355 LEU CB HB3 sing N N 356 LEU CG CD1 sing N N 357 LEU CG CD2 sing N N 358 LEU CG HG sing N N 359 LEU CD1 HD11 sing N N 360 LEU CD1 HD12 sing N N 361 LEU CD1 HD13 sing N N 362 LEU CD2 HD21 sing N N 363 LEU CD2 HD22 sing N N 364 LEU CD2 HD23 sing N N 365 LEU OXT HXT sing N N 366 LYS N CA sing N N 367 LYS N H sing N N 368 LYS N H2 sing N N 369 LYS CA C sing N N 370 LYS CA CB sing N N 371 LYS CA HA sing N N 372 LYS C O doub N N 373 LYS C OXT sing N N 374 LYS CB CG sing N N 375 LYS CB HB2 sing N N 376 LYS CB HB3 sing N N 377 LYS CG CD sing N N 378 LYS CG HG2 sing N N 379 LYS CG HG3 sing N N 380 LYS CD CE sing N N 381 LYS CD HD2 sing N N 382 LYS CD HD3 sing N N 383 LYS CE NZ sing N N 384 LYS CE HE2 sing N N 385 LYS CE HE3 sing N N 386 LYS NZ HZ1 sing N N 387 LYS NZ HZ2 sing N N 388 LYS NZ HZ3 sing N N 389 LYS OXT HXT sing N N 390 MET N CA sing N N 391 MET N H sing N N 392 MET N H2 sing N N 393 MET CA C sing N N 394 MET CA CB sing N N 395 MET CA HA sing N N 396 MET C O doub N N 397 MET C OXT sing N N 398 MET CB CG sing N N 399 MET CB HB2 sing N N 400 MET CB HB3 sing N N 401 MET CG SD sing N N 402 MET CG HG2 sing N N 403 MET CG HG3 sing N N 404 MET SD CE sing N N 405 MET CE HE1 sing N N 406 MET CE HE2 sing N N 407 MET CE HE3 sing N N 408 MET OXT HXT sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PRO N CA sing N N 433 PRO N CD sing N N 434 PRO N H sing N N 435 PRO CA C sing N N 436 PRO CA CB sing N N 437 PRO CA HA sing N N 438 PRO C O doub N N 439 PRO C OXT sing N N 440 PRO CB CG sing N N 441 PRO CB HB2 sing N N 442 PRO CB HB3 sing N N 443 PRO CG CD sing N N 444 PRO CG HG2 sing N N 445 PRO CG HG3 sing N N 446 PRO CD HD2 sing N N 447 PRO CD HD3 sing N N 448 PRO OXT HXT sing N N 449 SER N CA sing N N 450 SER N H sing N N 451 SER N H2 sing N N 452 SER CA C sing N N 453 SER CA CB sing N N 454 SER CA HA sing N N 455 SER C O doub N N 456 SER C OXT sing N N 457 SER CB OG sing N N 458 SER CB HB2 sing N N 459 SER CB HB3 sing N N 460 SER OG HG sing N N 461 SER OXT HXT sing N N 462 THR N CA sing N N 463 THR N H sing N N 464 THR N H2 sing N N 465 THR CA C sing N N 466 THR CA CB sing N N 467 THR CA HA sing N N 468 THR C O doub N N 469 THR C OXT sing N N 470 THR CB OG1 sing N N 471 THR CB CG2 sing N N 472 THR CB HB sing N N 473 THR OG1 HG1 sing N N 474 THR CG2 HG21 sing N N 475 THR CG2 HG22 sing N N 476 THR CG2 HG23 sing N N 477 THR OXT HXT sing N N 478 TRP N CA sing N N 479 TRP N H sing N N 480 TRP N H2 sing N N 481 TRP CA C sing N N 482 TRP CA CB sing N N 483 TRP CA HA sing N N 484 TRP C O doub N N 485 TRP C OXT sing N N 486 TRP CB CG sing N N 487 TRP CB HB2 sing N N 488 TRP CB HB3 sing N N 489 TRP CG CD1 doub Y N 490 TRP CG CD2 sing Y N 491 TRP CD1 NE1 sing Y N 492 TRP CD1 HD1 sing N N 493 TRP CD2 CE2 doub Y N 494 TRP CD2 CE3 sing Y N 495 TRP NE1 CE2 sing Y N 496 TRP NE1 HE1 sing N N 497 TRP CE2 CZ2 sing Y N 498 TRP CE3 CZ3 doub Y N 499 TRP CE3 HE3 sing N N 500 TRP CZ2 CH2 doub Y N 501 TRP CZ2 HZ2 sing N N 502 TRP CZ3 CH2 sing Y N 503 TRP CZ3 HZ3 sing N N 504 TRP CH2 HH2 sing N N 505 TRP OXT HXT sing N N 506 TYR N CA sing N N 507 TYR N H sing N N 508 TYR N H2 sing N N 509 TYR CA C sing N N 510 TYR CA CB sing N N 511 TYR CA HA sing N N 512 TYR C O doub N N 513 TYR C OXT sing N N 514 TYR CB CG sing N N 515 TYR CB HB2 sing N N 516 TYR CB HB3 sing N N 517 TYR CG CD1 doub Y N 518 TYR CG CD2 sing Y N 519 TYR CD1 CE1 sing Y N 520 TYR CD1 HD1 sing N N 521 TYR CD2 CE2 doub Y N 522 TYR CD2 HD2 sing N N 523 TYR CE1 CZ doub Y N 524 TYR CE1 HE1 sing N N 525 TYR CE2 CZ sing Y N 526 TYR CE2 HE2 sing N N 527 TYR CZ OH sing N N 528 TYR OH HH sing N N 529 TYR OXT HXT sing N N 530 VAL N CA sing N N 531 VAL N H sing N N 532 VAL N H2 sing N N 533 VAL CA C sing N N 534 VAL CA CB sing N N 535 VAL CA HA sing N N 536 VAL C O doub N N 537 VAL C OXT sing N N 538 VAL CB CG1 sing N N 539 VAL CB CG2 sing N N 540 VAL CB HB sing N N 541 VAL CG1 HG11 sing N N 542 VAL CG1 HG12 sing N N 543 VAL CG1 HG13 sing N N 544 VAL CG2 HG21 sing N N 545 VAL CG2 HG22 sing N N 546 VAL CG2 HG23 sing N N 547 VAL OXT HXT sing N N 548 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MWI 'double helix' 1MWI 'b-form double helix' 1MWI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 7_557 0.464 -0.209 0.419 -10.087 -14.142 4.586 1 D_DC1:DG6_D D 1 ? D 6 ? 19 1 1 A DG 2 1_555 A DA 5 7_557 -1.302 -4.278 -0.384 9.882 11.047 70.434 2 D_DG2:DA5_D D 2 ? D 5 ? ? ? 1 A DC 3 1_555 A DG 4 7_557 0.452 -0.127 -0.149 -2.463 -14.209 5.504 3 D_DC3:DG4_D D 3 ? D 4 ? 19 1 1 A DG 4 1_555 A DC 3 7_557 -0.452 -0.127 -0.149 2.463 -14.209 5.504 4 D_DG4:DC3_D D 4 ? D 3 ? 19 1 1 A DA 5 1_555 A DG 2 7_557 1.302 4.278 0.384 -9.882 -11.047 -70.434 5 D_DA5:DG2_D D 5 ? D 2 ? ? ? 1 A DG 6 1_555 A DC 1 7_557 -0.464 -0.209 0.419 10.087 -14.142 4.586 6 D_DG6:DC1_D D 6 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 7_557 A DG 2 1_555 A DA 5 7_557 2.215 -3.246 -0.309 -170.875 10.996 159.074 -1.620 -1.060 -0.742 5.502 85.510 178.409 1 DD_DC1DG2:DA5DG6_DD D 1 ? D 6 ? D 2 ? D 5 ? 1 A DG 2 1_555 A DA 5 7_557 A DC 3 1_555 A DG 4 7_557 0.574 3.700 -1.895 -140.016 108.898 -176.339 -1.831 0.311 -1.952 -54.450 -70.009 -179.916 2 DD_DG2DC3:DG4DA5_DD D 2 ? D 5 ? D 3 ? D 4 ? 1 A DC 3 1_555 A DG 4 7_557 A DG 4 1_555 A DC 3 7_557 0.000 0.492 3.058 0.000 18.402 28.952 -2.026 0.000 2.859 32.944 0.000 34.199 3 DD_DC3DG4:DC3DG4_DD D 3 ? D 4 ? D 4 ? D 3 ? 1 A DG 4 1_555 A DC 3 7_557 A DA 5 1_555 A DG 2 7_557 1.952 -1.757 3.273 -0.084 2.619 75.748 -1.508 -1.591 3.218 2.133 0.068 75.787 4 DD_DG4DA5:DG2DC3_DD D 4 ? D 3 ? D 5 ? D 2 ? 1 A DA 5 1_555 A DG 2 7_557 A DG 6 1_555 A DC 1 7_557 -0.743 2.323 3.097 -1.593 8.626 -7.364 -19.079 -5.099 0.143 -49.230 -9.091 -11.448 5 DD_DA5DG6:DC1DG2_DD D 5 ? D 2 ? D 6 ? D 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Native MUG' # _atom_sites.entry_id 1MWI _atom_sites.fract_transf_matrix[1][1] 0.00987 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00987 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02222 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_