data_1MXK # _entry.id 1MXK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MXK pdb_00001mxk 10.2210/pdb1mxk/pdb RCSB RCSB017282 ? ? WWPDB D_1000017282 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1MTG _pdbx_database_related.details '1mtg is HO2-Co(III)bleomycin-A(2) bound to d(GAGCTC)(2)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MXK _pdbx_database_status.recvd_initial_deposition_date 2002-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Xia, C.' 2 'Mao, Q.' 3 'Forsterling, H.' 4 'DeRose, E.' 5 'Antholine, W.E.' 6 'Subczynski, W.K.' 7 'Petering, D.H.' 8 # _citation.id primary _citation.title ;Structures of HO(2)-Co(III)bleomycin A(2) Bound to d(GAGCTC)(2) and d(GGAAGCTTCC)(2): Structure-Reactivity Relationships of Co and Fe Bleomycins ; _citation.journal_abbrev J.Inorg.Biochem. _citation.journal_volume 91 _citation.page_first 259 _citation.page_last 268 _citation.year 2002 _citation.journal_id_ASTM JIBIDJ _citation.country US _citation.journal_id_ISSN 0162-0134 _citation.journal_id_CSD 0525 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12121784 _citation.pdbx_database_id_DOI '10.1016/S0162-0134(02)00420-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Xia, C.' 2 ? primary 'Mao, Q.' 3 ? primary 'Forsterling, H.' 4 ? primary 'DeRose, E.' 5 ? primary 'Antholine, W.E.' 6 ? primary 'Subczynski, W.K.' 7 ? primary 'Petering, D.H.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*AP*AP*GP*CP*TP*TP*CP*C)-3'" 3045.005 2 ? ? ? ? 2 non-polymer syn 'COBALT (III) ION' 58.933 1 ? ? ? ? 3 non-polymer syn 'HYDROGEN PEROXIDE' 34.015 1 ? ? ? ? 4 non-polymer syn 'BLEOMYCIN A2' 1416.560 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGAAGCTTCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DA n 1 4 DA n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1MXK _struct_ref.pdbx_db_accession 1MXK _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1MXK A 1 ? 10 ? 1MXK 1 ? 10 ? 1 10 2 1 1MXK B 1 ? 10 ? 1MXK 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3CO non-polymer . 'COBALT (III) ION' ? 'Co 3' 58.933 BLM non-polymer . 'BLEOMYCIN A2' 'N1-[3-(DIMETHYLSULFONIO)-PROPYL]BLEOMYCINAMIDE' 'C55 H85 N17 O21 S3' 1416.560 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 PEO non-polymer . 'HYDROGEN PEROXIDE' ? 'H2 O2' 34.015 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 '2D TOCSY' 3 2 1 DQF-COSY 4 2 1 31P/1H-COSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '0.1 M NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;2mM Bleomycin/DNA complex; 20 mM phosphate buffer; 0.1 M NaCl ; '90% H2O/10% D2O' 2 '2mM Bleomycin/DNA complex; 20 mM phosphate buffer; 0.1 M NaCl' D2O # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1MXK _pdbx_nmr_refine.method 'Simulated Annealing, Molecular Dynamics' _pdbx_nmr_refine.details 'The structure is based on 424 distance restraints (333 intramolecular DNA, 66 intramolecular bleomycin and 25 intermolecular).' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1MXK _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_ensemble.entry_id 1MXK _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1MXK _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 1.3 collection 'Bruker Instr.' 1 Felix 2.3 'data analysis' Biosym 2 X-PLOR 3.1 refinement 'Axel Brunger' 3 # _exptl.entry_id 1MXK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1MXK _struct.title 'NMR Structure of HO2-Co(III)bleomycin A(2) Bound to d(GGAAGCTTCC)(2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1MXK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DRUG-DNA COMPLEX, COBALT(III), DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C 3CO . CO ? ? ? 1_555 D PEO . O1 ? ? A 3CO 22 A PEO 23 1_555 ? ? ? ? ? ? ? 1.839 ? ? metalc2 metalc ? ? C 3CO . CO ? ? ? 1_555 D PEO . O2 ? ? A 3CO 22 A PEO 23 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc3 metalc ? ? C 3CO . CO ? ? ? 1_555 E BLM . NG ? ? A 3CO 22 B BLM 21 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc4 metalc ? ? C 3CO . CO ? ? ? 1_555 E BLM . NC ? ? A 3CO 22 B BLM 21 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc5 metalc ? ? C 3CO . CO ? ? ? 1_555 E BLM . NB ? ? A 3CO 22 B BLM 21 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc6 metalc ? ? C 3CO . CO ? ? ? 1_555 E BLM . NH ? ? A 3CO 22 B BLM 21 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc7 metalc ? ? C 3CO . CO ? ? ? 1_555 E BLM . NJ ? ? A 3CO 22 B BLM 21 1_555 ? ? ? ? ? ? ? 2.004 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3CO 22 ? 2 'BINDING SITE FOR RESIDUE 3CO A 22' AC2 Software B BLM 21 ? 12 'BINDING SITE FOR RESIDUE BLM B 21' AC3 Software A PEO 23 ? 2 'BINDING SITE FOR RESIDUE PEO A 23' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 PEO D . ? PEO A 23 . ? 1_555 ? 2 AC1 2 BLM E . ? BLM B 21 . ? 1_555 ? 3 AC2 12 DG A 5 ? DG A 5 . ? 1_555 ? 4 AC2 12 DC A 6 ? DC A 6 . ? 1_555 ? 5 AC2 12 DT A 7 ? DT A 7 . ? 1_555 ? 6 AC2 12 3CO C . ? 3CO A 22 . ? 1_555 ? 7 AC2 12 PEO D . ? PEO A 23 . ? 1_555 ? 8 AC2 12 DA B 3 ? DA B 13 . ? 1_555 ? 9 AC2 12 DA B 4 ? DA B 14 . ? 1_555 ? 10 AC2 12 DG B 5 ? DG B 15 . ? 1_555 ? 11 AC2 12 DC B 6 ? DC B 16 . ? 1_555 ? 12 AC2 12 DT B 7 ? DT B 17 . ? 1_555 ? 13 AC2 12 DT B 8 ? DT B 18 . ? 1_555 ? 14 AC2 12 DC B 9 ? DC B 19 . ? 1_555 ? 15 AC3 2 3CO C . ? 3CO A 22 . ? 1_555 ? 16 AC3 2 BLM E . ? BLM B 21 . ? 1_555 ? # _database_PDB_matrix.entry_id 1MXK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1MXK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DA 3 3 3 DA ADE A . n A 1 4 DA 4 4 4 DA ADE A . n A 1 5 DG 5 5 5 DG GUA A . n A 1 6 DC 6 6 6 DC CYT A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DC 10 10 10 DC CYT A . n B 1 1 DG 1 11 11 DG GUA B . n B 1 2 DG 2 12 12 DG GUA B . n B 1 3 DA 3 13 13 DA ADE B . n B 1 4 DA 4 14 14 DA ADE B . n B 1 5 DG 5 15 15 DG GUA B . n B 1 6 DC 6 16 16 DC CYT B . n B 1 7 DT 7 17 17 DT THY B . n B 1 8 DT 8 18 18 DT THY B . n B 1 9 DC 9 19 19 DC CYT B . n B 1 10 DC 10 20 20 DC CYT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3CO 1 22 22 3CO 3CO A . D 3 PEO 1 23 23 PEO PEO A . E 4 BLM 1 21 21 BLM BLM B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 O2 ? D PEO . ? A PEO 23 ? 1_555 27.3 ? 2 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NG ? E BLM . ? B BLM 21 ? 1_555 89.7 ? 3 O2 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NG ? E BLM . ? B BLM 21 ? 1_555 72.8 ? 4 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NC ? E BLM . ? B BLM 21 ? 1_555 90.7 ? 5 O2 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NC ? E BLM . ? B BLM 21 ? 1_555 68.1 ? 6 NG ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NC ? E BLM . ? B BLM 21 ? 1_555 83.8 ? 7 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NB ? E BLM . ? B BLM 21 ? 1_555 177.3 ? 8 O2 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NB ? E BLM . ? B BLM 21 ? 1_555 150.7 ? 9 NG ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NB ? E BLM . ? B BLM 21 ? 1_555 90.5 ? 10 NC ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NB ? E BLM . ? B BLM 21 ? 1_555 86.6 ? 11 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NH ? E BLM . ? B BLM 21 ? 1_555 92.2 ? 12 O2 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NH ? E BLM . ? B BLM 21 ? 1_555 110.9 ? 13 NG ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NH ? E BLM . ? B BLM 21 ? 1_555 84.3 ? 14 NC ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NH ? E BLM . ? B BLM 21 ? 1_555 167.7 ? 15 NB ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NH ? E BLM . ? B BLM 21 ? 1_555 90.5 ? 16 O1 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 85.4 ? 17 O2 ? D PEO . ? A PEO 23 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 104.2 ? 18 NG ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 173.4 ? 19 NC ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 100.7 ? 20 NB ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 94.6 ? 21 NH ? E BLM . ? B BLM 21 ? 1_555 CO ? C 3CO . ? A 3CO 22 ? 1_555 NJ ? E BLM . ? B BLM 21 ? 1_555 91.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-10-16 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 A PEO 23 ? ? HNK B BLM 21 ? ? 1.39 2 1 O2 A DC 9 ? ? H21 B DG 12 ? ? 1.51 3 1 H21 A DG 1 ? ? O2 B DC 20 ? ? 1.56 4 1 O2 A DC 10 ? ? H21 B DG 11 ? ? 1.57 5 1 H21 A DG 2 ? ? O2 B DC 19 ? ? 1.58 6 1 H41 A DC 6 ? ? O6 B DG 15 ? ? 1.59 7 1 O6 A DG 5 ? ? H41 B DC 16 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.19 108.30 2.89 0.30 N 2 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 117.58 113.10 4.48 0.50 N 3 1 C8 A DG 1 ? ? N9 A DG 1 ? ? C4 A DG 1 ? ? 103.77 106.40 -2.63 0.40 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.36 108.30 3.06 0.30 N 5 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 117.67 113.10 4.57 0.50 N 6 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.93 106.40 -2.47 0.40 N 7 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.23 108.30 2.93 0.30 N 8 1 N7 A DA 3 ? ? C8 A DA 3 ? ? N9 A DA 3 ? ? 117.57 113.80 3.77 0.50 N 9 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.13 108.30 2.83 0.30 N 10 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 117.69 113.80 3.89 0.50 N 11 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.48 108.30 4.18 0.30 N 12 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 117.61 113.10 4.51 0.50 N 13 1 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 103.88 106.40 -2.52 0.40 N 14 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.02 108.30 2.72 0.30 N 15 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.29 108.30 1.99 0.30 N 16 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.11 122.90 -3.79 0.60 N 17 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.73 108.30 3.43 0.30 N 18 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.09 108.30 2.79 0.30 N 19 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.54 108.30 2.24 0.30 N 20 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.21 108.30 2.91 0.30 N 21 1 N7 B DG 11 ? ? C8 B DG 11 ? ? N9 B DG 11 ? ? 117.56 113.10 4.46 0.50 N 22 1 C8 B DG 11 ? ? N9 B DG 11 ? ? C4 B DG 11 ? ? 103.83 106.40 -2.57 0.40 N 23 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.89 108.30 2.59 0.30 N 24 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 117.72 113.10 4.62 0.50 N 25 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.84 106.40 -2.56 0.40 N 26 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.91 108.30 2.61 0.30 N 27 1 N7 B DA 13 ? ? C8 B DA 13 ? ? N9 B DA 13 ? ? 117.70 113.80 3.90 0.50 N 28 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.69 108.30 3.39 0.30 N 29 1 N7 B DA 14 ? ? C8 B DA 14 ? ? N9 B DA 14 ? ? 117.54 113.80 3.74 0.50 N 30 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.77 108.30 2.47 0.30 N 31 1 N7 B DG 15 ? ? C8 B DG 15 ? ? N9 B DG 15 ? ? 117.70 113.10 4.60 0.50 N 32 1 C8 B DG 15 ? ? N9 B DG 15 ? ? C4 B DG 15 ? ? 103.67 106.40 -2.73 0.40 N 33 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 112.18 108.30 3.88 0.30 N 34 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.65 108.30 3.35 0.30 N 35 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 110.78 108.30 2.48 0.30 N 36 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 112.27 108.30 3.97 0.30 N 37 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.03 108.30 2.73 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1MXK 'double helix' 1MXK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.604 -0.377 0.039 -0.202 -1.191 1.464 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.630 -0.350 -0.063 1.945 -2.138 2.018 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.005 -0.199 -0.019 3.656 -5.133 0.301 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DA 4 1_555 B DT 7 1_555 -0.158 0.159 -0.067 2.247 -5.839 2.320 4 A_DA4:DT17_B A 4 ? B 17 ? 20 1 1 A DG 5 1_555 B DC 6 1_555 0.186 -0.088 -0.281 -4.357 1.056 -11.625 5 A_DG5:DC16_B A 5 ? B 16 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 -0.629 -0.152 -0.143 15.841 -10.448 -10.751 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1 1 A DT 7 1_555 B DA 4 1_555 -0.322 0.395 -0.169 -13.072 6.348 13.680 7 A_DT7:DA14_B A 7 ? B 14 ? ? ? 1 A DT 8 1_555 B DA 3 1_555 -0.041 -0.213 -0.109 -4.407 -1.040 -4.803 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.723 -0.189 -0.052 2.843 -4.402 6.420 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.516 -0.362 0.146 -2.836 0.335 0.980 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DG 2 1_555 B DC 9 1_555 0.140 -0.670 3.421 1.020 -6.952 36.492 -0.063 -0.075 3.488 -10.977 -1.611 37.140 1 AA_DG1DG2:DC19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 -0.365 -0.888 3.159 0.266 -2.452 34.805 -1.119 0.648 3.210 -4.092 -0.444 34.889 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DA 4 1_555 B DT 7 1_555 -0.030 -1.199 3.274 -0.636 -2.780 33.599 -1.609 -0.054 3.359 -4.799 1.098 33.716 3 AA_DA3DA4:DT17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DA 4 1_555 B DT 7 1_555 A DG 5 1_555 B DC 6 1_555 -1.461 -1.008 3.352 -2.208 6.064 32.140 -2.844 2.205 3.204 10.817 3.938 32.765 4 AA_DA4DG5:DC16DT17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 -1.186 0.061 2.396 -1.519 -0.333 29.050 0.175 2.115 2.452 -0.662 3.025 29.091 5 AA_DG5DC6:DG15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DC 6 1_555 B DG 5 1_555 A DT 7 1_555 B DA 4 1_555 1.938 1.000 6.306 -2.157 13.047 36.052 -1.696 -3.484 6.168 20.261 3.350 38.326 6 AA_DC6DT7:DA14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DT 7 1_555 B DA 4 1_555 A DT 8 1_555 B DA 3 1_555 -1.168 -0.138 3.151 0.011 12.710 27.273 -2.765 2.256 2.809 25.286 -0.021 30.038 7 AA_DT7DT8:DA13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 0.745 -0.131 3.192 1.606 0.961 37.281 -0.328 -0.957 3.216 1.503 -2.510 37.327 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DC 10 1_555 B DG 1 1_555 -0.589 -0.479 3.660 -6.800 -10.462 39.684 0.609 -0.004 3.713 -14.969 9.730 41.524 9 AA_DC9DC10:DG11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (III) ION' 3CO 3 'HYDROGEN PEROXIDE' PEO 4 'BLEOMYCIN A2' BLM #