HEADER LYASE 03-OCT-02 1MXS TITLE CRYSTAL STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE (KDPG) ALDOLASE TITLE 2 FROM PSEUDOMONAS PUTIDA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: KDPG ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-DEHYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE; COMPND 5 EC: 4.1.2.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303 KEYWDS 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE, SULFATE, BETA-BARREL, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WATANABE,B.J.BELL,L.LEBIODA,J.L.RIOS-STEINER,A.TULINSKY,R.K.ARNI REVDAT 5 25-OCT-23 1MXS 1 REMARK REVDAT 4 11-OCT-17 1MXS 1 REMARK REVDAT 3 13-JUL-11 1MXS 1 VERSN REVDAT 2 24-FEB-09 1MXS 1 VERSN REVDAT 1 16-SEP-03 1MXS 0 JRNL AUTH B.J.BELL,L.WATANABE,J.L.RIOS-STEINER,A.TULINSKY,L.LEBIODA, JRNL AUTH 2 R.K.ARNI JRNL TITL STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE (KDPG) JRNL TITL 2 ALDOLASE FROM PSEUDOMONAS PUTIDA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 1454 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12876349 JRNL DOI 10.1107/S0907444903013192 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.WYMER,L.V.BUCHANAN,D.HENDERSON,N.MEHTA,C.H.BOTTING, REMARK 1 AUTH 2 L.POCIVAVSEK,C.A.FIERKE,E.J.TOONE,J.H.NAISMITH REMARK 1 TITL DIRECTED EVOLUTION OF A NEW CATALYTIC SITE IN REMARK 1 TITL 2 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE FROM ESCHERICHIA REMARK 1 TITL 3 COLI. REMARK 1 REF STRUCTURE V. 9 1 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(00)00555-4 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.ALLARD,P.GROCHULSKI,J.SYGUSCH REMARK 1 TITL COVALENT INTERMEDIATE TRAPPED IN REMARK 1 TITL 2 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE (KDPG) ALDOLASE STRUCTURE REMARK 1 TITL 3 AT 1.95-A RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 98 3679 2001 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.071380898 REMARK 1 REFERENCE 3 REMARK 1 AUTH I.M.MAVRIDIS,A.TULINSKY REMARK 1 TITL THE FOLDING AND QUATERNARY STRUCTURE OF TRIMERIC REMARK 1 TITL 2 2-KETO-3-DEOXY-6-PHOSPHOGLUCONIC ALDOLASE AT 3.5-A REMARK 1 TITL 3 RESOLUTION. REMARK 1 REF BIOCHEMISTRY V. 15 4410 1976 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH I.M.MAVRIDIS,M.H.HATADA,A.TULINSKY,L.LEBIODA REMARK 1 TITL STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE AT REMARK 1 TITL 2 2.8A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 162 419 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 52.9 REMARK 3 NUMBER OF REFLECTIONS : 9901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 50.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 488 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 31 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.059 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 30.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 296 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : YALE/MSC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 9.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.04600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1EUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, KH2PO4, PH 3.5, REMARK 280 MICRODIALYSIS, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 51.65000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 51.65000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 51.65000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 51.65000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 51.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 51.65000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 154.95000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 103.30000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 154.95000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 103.30000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -51.65000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 333 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 195 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 211 NH2 ARG A 211 8656 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 110 CD GLU A 110 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 -46.09 73.76 REMARK 500 GLU A 39 1.27 -58.28 REMARK 500 ILE A 41 -71.20 -51.04 REMARK 500 HIS A 64 4.20 -69.96 REMARK 500 SER A 128 -31.15 -131.76 REMARK 500 PHE A 165 68.87 -112.84 REMARK 500 THR A 195 -176.77 175.49 REMARK 500 LEU A 199 50.94 -114.33 REMARK 500 ASN A 206 1.80 -67.54 REMARK 500 ASP A 224 81.40 -170.66 REMARK 500 ALA A 225 -63.19 173.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 300 DBREF 1MXS A 2 226 UNP P00885 ALKD_PSEPU 1 225 SEQADV 1MXS THR A 196 UNP P00885 GLY 195 SEE REMARK 999 SEQRES 1 A 225 THR THR LEU GLU ARG PRO GLN PRO LYS LEU SER MET ALA SEQRES 2 A 225 ASP LYS ALA ALA ARG ILE ASP ALA ILE CYS GLU LYS ALA SEQRES 3 A 225 ARG ILE LEU PRO VAL ILE THR ILE ALA ARG GLU GLU ASP SEQRES 4 A 225 ILE LEU PRO LEU ALA ASP ALA LEU ALA ALA GLY GLY ILE SEQRES 5 A 225 ARG THR LEU GLU VAL THR LEU ARG SER GLN HIS GLY LEU SEQRES 6 A 225 LYS ALA ILE GLN VAL LEU ARG GLU GLN ARG PRO GLU LEU SEQRES 7 A 225 CYS VAL GLY ALA GLY THR VAL LEU ASP ARG SER MET PHE SEQRES 8 A 225 ALA ALA VAL GLU ALA ALA GLY ALA GLN PHE VAL VAL THR SEQRES 9 A 225 PRO GLY ILE THR GLU ASP ILE LEU GLU ALA GLY VAL ASP SEQRES 10 A 225 SER GLU ILE PRO LEU LEU PRO GLY ILE SER THR PRO SER SEQRES 11 A 225 GLU ILE MET MET GLY TYR ALA LEU GLY TYR ARG ARG PHE SEQRES 12 A 225 LYS LEU PHE PRO ALA GLU ILE SER GLY GLY VAL ALA ALA SEQRES 13 A 225 ILE LYS ALA PHE GLY GLY PRO PHE GLY ASP ILE ARG PHE SEQRES 14 A 225 CYS PRO THR GLY GLY VAL ASN PRO ALA ASN VAL ARG ASN SEQRES 15 A 225 TYR MET ALA LEU PRO ASN VAL MET CYS VAL GLY THR THR SEQRES 16 A 225 TRP MET LEU ASP SER SER TRP ILE LYS ASN GLY ASP TRP SEQRES 17 A 225 ALA ARG ILE GLU ALA CYS SER ALA GLU ALA ILE ALA LEU SEQRES 18 A 225 LEU ASP ALA ASN HET SO4 A 299 5 HET SO4 A 300 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *56(H2 O) HELIX 1 1 SER A 12 ARG A 28 1 17 HELIX 2 2 ARG A 37 GLU A 39 5 3 HELIX 3 3 ASP A 40 GLY A 51 1 12 HELIX 4 4 HIS A 64 ARG A 76 1 13 HELIX 5 5 ASP A 88 GLY A 99 1 12 HELIX 6 6 THR A 109 SER A 119 1 11 HELIX 7 7 THR A 129 ALA A 138 1 10 HELIX 8 8 PRO A 148 GLY A 153 1 6 HELIX 9 9 GLY A 153 GLY A 163 1 11 HELIX 10 10 ASN A 180 LEU A 187 1 8 HELIX 11 11 ASP A 200 ASN A 206 1 7 HELIX 12 12 ASP A 208 LEU A 222 1 15 SHEET 1 A 4 CYS A 80 GLY A 84 0 SHEET 2 A 4 THR A 55 THR A 59 1 N VAL A 58 O GLY A 82 SHEET 3 A 4 ILE A 29 ILE A 33 1 N ILE A 33 O THR A 59 SHEET 4 A 4 VAL A 193 THR A 195 1 O VAL A 193 N LEU A 30 SHEET 1 B 2 VAL A 103 VAL A 104 0 SHEET 2 B 2 LEU A 123 LEU A 124 1 O LEU A 124 N VAL A 103 SHEET 1 C 3 GLY A 126 ILE A 127 0 SHEET 2 C 3 ARG A 143 LEU A 146 1 O LYS A 145 N ILE A 127 SHEET 3 C 3 ARG A 169 PRO A 172 1 O ARG A 169 N PHE A 144 CISPEP 1 PHE A 147 PRO A 148 0 -0.20 SITE 1 AC1 5 GLY A 174 GLY A 175 THR A 195 THR A 196 SITE 2 AC1 5 HOH A 305 SITE 1 AC2 8 GLU A 57 ARG A 61 GLY A 84 THR A 85 SITE 2 AC2 8 VAL A 104 THR A 105 PRO A 106 LYS A 145 CRYST1 103.300 103.300 103.300 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009681 0.00000