HEADER MEMBRANE PROTEIN 03-OCT-02 1MY2 TITLE CRYSTAL TITRATION EXPERIMENT (AMPA COMPLEX CONTROL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: LIGAND BINDING CORE (S1S2J); COMPND 5 SYNONYM: GLUR-2, GLUR-B, GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC, AMPA COMPND 6 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETGQ KEYWDS IONOTROPIC GLUTAMATE RECEPTOR, GLUR2, LIGAND BINDING CORE, S1S2, KEYWDS 2 PARTIAL AGONIST, BROMO-WILLARDIINE, AMPA, CRYSTAL TITRATION, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JIN,E.GOUAUX REVDAT 5 23-AUG-17 1MY2 1 SOURCE REMARK REVDAT 4 05-FEB-14 1MY2 1 JRNL REVDAT 3 13-JUL-11 1MY2 1 VERSN REVDAT 2 24-FEB-09 1MY2 1 VERSN REVDAT 1 10-JUN-03 1MY2 0 JRNL AUTH R.JIN,E.GOUAUX JRNL TITL PROBING THE FUNCTION, CONFORMATIONAL PLASTICITY, AND JRNL TITL 2 DIMER-DIMER CONTACTS OF THE GLUR2 LIGAND-BINDING CORE: JRNL TITL 3 STUDIES OF 5-SUBSTITUTED WILLARDIINES AND GLUR2 S1S2 IN THE JRNL TITL 4 CRYSTAL. JRNL REF BIOCHEMISTRY V. 42 5201 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12731861 JRNL DOI 10.1021/BI020632T REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.JIN,T.BANK,M.L.MAYER,S.TRAYNELIS,E.GOUAUX REMARK 1 TITL PARTIAL AGONIST ACTION DEFINED BY STABILIZATION OF SPECIFIC REMARK 1 TITL 2 CONFORMATIONAL SUBSTATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2292322.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 79100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7954 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9253 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 978 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 44.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : AMPA.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : AMPA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91843 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, ZINC ACETATE, SODIUM REMARK 280 CACODYLATE, PH 6.5 AND AMPA, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.27000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.05150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.05150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.54000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 164.10300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 57.27000 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 82.05150 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 94.79000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 262 REMARK 465 SER A 263 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 262 REMARK 465 SER B 263 REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 3 REMARK 465 GLY C 262 REMARK 465 SER C 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 258 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 26 -168.39 -75.52 REMARK 500 PRO B 120 64.38 -69.69 REMARK 500 PRO C 120 54.98 -65.50 REMARK 500 ALA C 153 -67.40 -24.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 GLU B 166 OE2 114.0 REMARK 620 3 GLU A 42 OE1 93.1 102.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 23 NE2 REMARK 620 2 HOH B 830 O 106.4 REMARK 620 3 GLU B 30 OE2 112.4 107.5 REMARK 620 4 HIS C 23 NE2 105.4 115.0 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 42 OE1 REMARK 620 2 HIS B 46 NE2 92.8 REMARK 620 3 HOH B 721 O 112.5 117.5 REMARK 620 4 GLU A 166 OE2 98.1 113.1 118.0 REMARK 620 5 GLU A 166 OE1 149.1 89.4 93.5 53.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 65 OD1 REMARK 620 2 ASP C 65 OD2 51.7 REMARK 620 3 HOH A 791 O 100.2 114.3 REMARK 620 4 HIS A 23 NE2 155.1 104.2 96.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 705 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 46 NE2 REMARK 620 2 GLU C 42 OE1 93.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMQ C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMQ A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMQ B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FTM RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMPA REMARK 900 RELATED ID: 1MXU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BROMO-WILLARDIINE, AS A CONTROL REMARK 900 FOR CRYSTAL TITRATION EXPERIMENTS REMARK 900 RELATED ID: 1MXV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 10 MM BRW REMARK 900 RELATED ID: 1MXW RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 1 MM BRW REMARK 900 RELATED ID: 1MXX RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 100 UM BRW REMARK 900 RELATED ID: 1MXY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 10 UM BRW REMARK 900 RELATED ID: 1MXZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 1 UM BRW REMARK 900 RELATED ID: 1MY0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 100 NM BRW REMARK 900 RELATED ID: 1MY1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AMPA, CRYSTALS WERE THEN SOAKED IN REMARK 900 10 NM BRW REMARK 900 RELATED ID: 1MY3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BROMO-WILLARDIINE IN A ZINC REMARK 900 CRYSTAL FORM DBREF 1MY2 A 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 1MY2 A 120 263 UNP P19491 GRIA2_RAT 653 796 DBREF 1MY2 B 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 1MY2 B 120 263 UNP P19491 GRIA2_RAT 653 796 DBREF 1MY2 C 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 1MY2 C 120 263 UNP P19491 GRIA2_RAT 653 796 SEQADV 1MY2 GLY A 1 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 ALA A 2 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 GLY A 118 UNP P19491 LINKER SEQADV 1MY2 THR A 119 UNP P19491 LINKER SEQADV 1MY2 GLY B 1 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 ALA B 2 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 GLY B 118 UNP P19491 LINKER SEQADV 1MY2 THR B 119 UNP P19491 LINKER SEQADV 1MY2 GLY C 1 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 ALA C 2 UNP P19491 CLONING ARTIFACT SEQADV 1MY2 GLY C 118 UNP P19491 LINKER SEQADV 1MY2 THR C 119 UNP P19491 LINKER SEQRES 1 A 263 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 A 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 A 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 A 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 A 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 A 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 A 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 A 263 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 A 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 A 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 A 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 A 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 A 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 A 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 A 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 A 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 A 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 A 263 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 A 263 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 A 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 A 263 CYS GLY SER SEQRES 1 B 263 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 B 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 B 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 B 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 B 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 B 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 B 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 B 263 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 B 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 B 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 B 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 B 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 B 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 B 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 B 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 B 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 B 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 B 263 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 B 263 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 B 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 B 263 CYS GLY SER SEQRES 1 C 263 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 C 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 C 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 C 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 C 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 C 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 C 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 C 263 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 C 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 C 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 C 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 C 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 C 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 C 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 C 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 C 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 C 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 C 263 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 C 263 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 C 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 C 263 CYS GLY SER HET ZN A 701 1 HET AMQ A 602 13 HET ZN B 702 1 HET ZN B 704 1 HET AMQ B 603 13 HET ZN C 703 1 HET ZN C 705 1 HET AMQ C 601 13 HETNAM ZN ZINC ION HETNAM AMQ (S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONIC HETNAM 2 AMQ ACID HETSYN AMQ AMPA FORMUL 4 ZN 5(ZN 2+) FORMUL 5 AMQ 3(C7 H10 N2 O4) FORMUL 12 HOH *420(H2 O) HELIX 1 1 ASN A 22 LEU A 26 5 5 HELIX 2 2 GLU A 27 GLU A 30 5 4 HELIX 3 3 GLY A 34 GLY A 48 1 15 HELIX 4 4 ASN A 72 TYR A 80 1 9 HELIX 5 5 THR A 93 GLU A 98 1 6 HELIX 6 6 SER A 123 LYS A 129 1 7 HELIX 7 7 GLY A 141 SER A 150 1 10 HELIX 8 8 ILE A 152 ALA A 165 1 14 HELIX 9 9 THR A 173 SER A 184 1 12 HELIX 10 10 SER A 194 GLN A 202 1 9 HELIX 11 11 LEU A 230 GLN A 244 1 15 HELIX 12 12 GLY A 245 TYR A 256 1 12 HELIX 13 13 GLY B 28 GLU B 30 5 3 HELIX 14 14 GLY B 34 GLY B 48 1 15 HELIX 15 15 ASN B 72 TYR B 80 1 9 HELIX 16 16 THR B 93 GLU B 98 1 6 HELIX 17 17 SER B 123 LYS B 129 1 7 HELIX 18 18 GLY B 141 SER B 150 1 10 HELIX 19 19 ILE B 152 ALA B 165 1 14 HELIX 20 20 THR B 173 SER B 184 1 12 HELIX 21 21 SER B 194 GLN B 202 1 9 HELIX 22 22 LEU B 230 GLN B 244 1 15 HELIX 23 23 GLY B 245 TRP B 255 1 11 HELIX 24 24 ASN C 22 LEU C 26 5 5 HELIX 25 25 GLU C 27 GLU C 30 5 4 HELIX 26 26 GLY C 34 GLY C 48 1 15 HELIX 27 27 ASN C 72 TYR C 80 1 9 HELIX 28 28 THR C 93 GLU C 98 1 6 HELIX 29 29 SER C 123 LYS C 129 1 7 HELIX 30 30 GLY C 141 ARG C 149 1 9 HELIX 31 31 ILE C 152 ALA C 165 1 14 HELIX 32 32 THR C 173 SER C 184 1 12 HELIX 33 33 SER C 194 GLN C 202 1 9 HELIX 34 34 LEU C 230 GLN C 244 1 15 HELIX 35 35 GLY C 245 TYR C 256 1 12 SHEET 1 A 3 TYR A 51 ILE A 55 0 SHEET 2 A 3 VAL A 6 THR A 10 1 N VAL A 8 O LYS A 52 SHEET 3 A 3 ILE A 85 ALA A 86 1 O ILE A 85 N THR A 9 SHEET 1 B 2 MET A 18 MET A 19 0 SHEET 2 B 2 TYR A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 C 2 ILE A 100 PHE A 102 0 SHEET 2 C 2 ALA A 223 PRO A 225 -1 O THR A 224 N ASP A 101 SHEET 1 D 2 MET A 107 LEU A 109 0 SHEET 2 D 2 LYS A 218 TYR A 220 -1 O LYS A 218 N LEU A 109 SHEET 1 E 4 ALA A 134 GLY A 136 0 SHEET 2 E 4 TYR A 188 GLU A 193 1 O LEU A 191 N GLY A 136 SHEET 3 E 4 ILE A 111 LYS A 116 -1 N MET A 114 O TYR A 190 SHEET 4 E 4 THR A 208 VAL A 211 -1 O MET A 209 N ILE A 115 SHEET 1 F 3 TYR B 51 ILE B 55 0 SHEET 2 F 3 VAL B 6 THR B 10 1 N VAL B 8 O THR B 54 SHEET 3 F 3 ILE B 85 ALA B 86 1 O ILE B 85 N THR B 9 SHEET 1 G 2 MET B 18 MET B 19 0 SHEET 2 G 2 TYR B 32 GLU B 33 -1 O GLU B 33 N MET B 18 SHEET 1 H 2 ILE B 100 PHE B 102 0 SHEET 2 H 2 ALA B 223 PRO B 225 -1 O THR B 224 N ASP B 101 SHEET 1 I 2 MET B 107 LEU B 109 0 SHEET 2 I 2 LYS B 218 TYR B 220 -1 O LYS B 218 N LEU B 109 SHEET 1 J 4 ALA B 134 THR B 137 0 SHEET 2 J 4 TYR B 188 GLU B 193 1 O LEU B 191 N GLY B 136 SHEET 3 J 4 ILE B 111 LYS B 116 -1 N SER B 112 O LEU B 192 SHEET 4 J 4 THR B 208 VAL B 211 -1 O MET B 209 N ILE B 115 SHEET 1 K 3 TYR C 51 ILE C 55 0 SHEET 2 K 3 VAL C 6 THR C 10 1 N VAL C 8 O LYS C 52 SHEET 3 K 3 ILE C 85 ALA C 86 1 O ILE C 85 N THR C 9 SHEET 1 L 2 MET C 18 MET C 19 0 SHEET 2 L 2 TYR C 32 GLU C 33 -1 O GLU C 33 N MET C 18 SHEET 1 M 2 ILE C 100 PHE C 102 0 SHEET 2 M 2 ALA C 223 PRO C 225 -1 O THR C 224 N ASP C 101 SHEET 1 N 2 MET C 107 LEU C 109 0 SHEET 2 N 2 LYS C 218 TYR C 220 -1 O LYS C 218 N LEU C 109 SHEET 1 O 4 ALA C 134 THR C 137 0 SHEET 2 O 4 TYR C 188 GLU C 193 1 O LEU C 191 N GLY C 136 SHEET 3 O 4 ILE C 111 LYS C 116 -1 N MET C 114 O TYR C 190 SHEET 4 O 4 THR C 208 VAL C 211 -1 O MET C 209 N ILE C 115 SSBOND 1 CYS A 206 CYS A 261 1555 1555 2.04 SSBOND 2 CYS B 206 CYS B 261 1555 1555 2.03 SSBOND 3 CYS C 206 CYS C 261 1555 1555 2.03 LINK ZN ZN A 701 NE2 HIS A 46 1555 1555 2.31 LINK ZN ZN A 701 OE2 GLU B 166 1555 1555 2.08 LINK ZN ZN A 701 OE1 GLU A 42 1555 1555 2.13 LINK ZN ZN B 702 NE2 HIS B 23 1555 1555 2.07 LINK ZN ZN B 702 O HOH B 830 1555 1555 2.15 LINK ZN ZN B 702 OE2 GLU B 30 1555 1555 2.27 LINK ZN ZN B 704 OE1 GLU B 42 1555 1555 2.19 LINK ZN ZN B 704 NE2 HIS B 46 1555 1555 2.06 LINK ZN ZN B 704 O HOH B 721 1555 1555 2.21 LINK ZN ZN C 703 OD1 ASP C 65 1555 1555 2.68 LINK ZN ZN C 703 OD2 ASP C 65 1555 1555 2.29 LINK ZN ZN C 705 NE2 HIS C 46 1555 1555 2.46 LINK ZN ZN C 705 OE1 GLU C 42 1555 1555 2.38 LINK ZN ZN B 702 NE2 HIS C 23 1555 4557 2.26 LINK ZN ZN B 704 OE2 GLU A 166 1555 3657 2.29 LINK ZN ZN B 704 OE1 GLU A 166 1555 3657 2.60 LINK ZN ZN C 703 O HOH A 791 1555 4457 2.31 LINK ZN ZN C 703 NE2 HIS A 23 1555 4457 2.31 CISPEP 1 SER A 14 PRO A 15 0 0.03 CISPEP 2 GLU A 166 PRO A 167 0 -0.16 CISPEP 3 LYS A 204 PRO A 205 0 0.49 CISPEP 4 SER B 14 PRO B 15 0 -0.07 CISPEP 5 GLU B 166 PRO B 167 0 -0.23 CISPEP 6 LYS B 204 PRO B 205 0 0.10 CISPEP 7 SER C 14 PRO C 15 0 0.13 CISPEP 8 GLU C 166 PRO C 167 0 0.17 CISPEP 9 LYS C 204 PRO C 205 0 0.14 SITE 1 AC1 3 GLU A 42 HIS A 46 GLU B 166 SITE 1 AC2 4 HIS B 23 GLU B 30 HOH B 830 HIS C 23 SITE 1 AC3 3 HIS A 23 HOH A 791 ASP C 65 SITE 1 AC4 5 GLU A 166 GLU B 42 HIS B 46 LEU B 241 SITE 2 AC4 5 HOH B 721 SITE 1 AC5 3 GLU C 42 LYS C 45 HIS C 46 SITE 1 AC6 14 TYR C 61 PRO C 89 LEU C 90 THR C 91 SITE 2 AC6 14 ARG C 96 GLY C 141 SER C 142 THR C 143 SITE 3 AC6 14 GLU C 193 MET C 196 TYR C 220 HOH C 814 SITE 4 AC6 14 HOH C 815 HOH C 816 SITE 1 AC7 14 TYR A 61 PRO A 89 LEU A 90 THR A 91 SITE 2 AC7 14 ARG A 96 GLY A 141 SER A 142 THR A 143 SITE 3 AC7 14 LEU A 192 GLU A 193 MET A 196 TYR A 220 SITE 4 AC7 14 HOH A 833 HOH A 835 SITE 1 AC8 13 TYR B 61 PRO B 89 THR B 91 ARG B 96 SITE 2 AC8 13 GLY B 141 SER B 142 THR B 143 LEU B 192 SITE 3 AC8 13 GLU B 193 MET B 196 TYR B 220 HOH B 812 SITE 4 AC8 13 HOH B 867 CRYST1 114.540 164.103 47.395 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021099 0.00000