data_1MZD # _entry.id 1MZD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1MZD pdb_00001mzd 10.2210/pdb1mzd/pdb RCSB RCSB017327 ? ? WWPDB D_1000017327 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-14 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1MZD _pdbx_database_status.recvd_initial_deposition_date 2002-10-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1MZA _pdbx_database_related.details '1MZA contains granzyme K at 2.23A' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hink-Schauer, C.' 1 'Estebanez-Perpina, E.' 2 'Wilharm, E.' 3 'Fuentes-Prior, P.' 4 'Klinkert, W.' 5 'Bode, W.' 6 'Jenne, D.E.' 7 # _citation.id primary _citation.title 'The 2.2-A Crystal Structure of Human Pro-granzyme K Reveals a Rigid Zymogen with Unusual Features' _citation.journal_abbrev J.BIOL.CHEM. _citation.journal_volume 277 _citation.page_first 50923 _citation.page_last 50933 _citation.year 2002 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12384499 _citation.pdbx_database_id_DOI 10.1074/jbc.M207962200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hink-Schauer, C.' 1 ? primary 'Estebanez-Perpina, E.' 2 ? primary 'Wilharm, E.' 3 ? primary 'Fuentes-Prior, P.' 4 ? primary 'Klinkert, W.' 5 ? primary 'Bode, W.' 6 ? primary 'Jenne, D.E.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'pro-granzyme K' 26134.189 1 3.4.21.- S195A ? ? 2 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'granzyme K, granzyme 3, NK-tryptase-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN ; _entity_poly.pdbx_seq_one_letter_code_can ;MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ILE n 1 4 ILE n 1 5 GLY n 1 6 GLY n 1 7 LYS n 1 8 GLU n 1 9 VAL n 1 10 SER n 1 11 PRO n 1 12 HIS n 1 13 SER n 1 14 ARG n 1 15 PRO n 1 16 PHE n 1 17 MET n 1 18 ALA n 1 19 SER n 1 20 ILE n 1 21 GLN n 1 22 TYR n 1 23 GLY n 1 24 GLY n 1 25 HIS n 1 26 HIS n 1 27 VAL n 1 28 CYS n 1 29 GLY n 1 30 GLY n 1 31 VAL n 1 32 LEU n 1 33 ILE n 1 34 ASP n 1 35 PRO n 1 36 GLN n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 CYS n 1 45 GLN n 1 46 TYR n 1 47 ARG n 1 48 PHE n 1 49 THR n 1 50 LYS n 1 51 GLY n 1 52 GLN n 1 53 SER n 1 54 PRO n 1 55 THR n 1 56 VAL n 1 57 VAL n 1 58 LEU n 1 59 GLY n 1 60 ALA n 1 61 HIS n 1 62 SER n 1 63 LEU n 1 64 SER n 1 65 LYS n 1 66 ASN n 1 67 GLU n 1 68 ALA n 1 69 SER n 1 70 LYS n 1 71 GLN n 1 72 THR n 1 73 LEU n 1 74 GLU n 1 75 ILE n 1 76 LYS n 1 77 LYS n 1 78 PHE n 1 79 ILE n 1 80 PRO n 1 81 PHE n 1 82 SER n 1 83 ARG n 1 84 VAL n 1 85 THR n 1 86 SER n 1 87 ASP n 1 88 PRO n 1 89 GLN n 1 90 SER n 1 91 ASN n 1 92 ASP n 1 93 ILE n 1 94 MET n 1 95 LEU n 1 96 VAL n 1 97 LYS n 1 98 LEU n 1 99 GLN n 1 100 THR n 1 101 ALA n 1 102 ALA n 1 103 LYS n 1 104 LEU n 1 105 ASN n 1 106 LYS n 1 107 HIS n 1 108 VAL n 1 109 LYS n 1 110 MET n 1 111 LEU n 1 112 HIS n 1 113 ILE n 1 114 ARG n 1 115 SER n 1 116 LYS n 1 117 THR n 1 118 SER n 1 119 LEU n 1 120 ARG n 1 121 SER n 1 122 GLY n 1 123 THR n 1 124 LYS n 1 125 CYS n 1 126 LYS n 1 127 VAL n 1 128 THR n 1 129 GLY n 1 130 TRP n 1 131 GLY n 1 132 ALA n 1 133 THR n 1 134 ASP n 1 135 PRO n 1 136 ASP n 1 137 SER n 1 138 LEU n 1 139 ARG n 1 140 PRO n 1 141 SER n 1 142 ASP n 1 143 THR n 1 144 LEU n 1 145 ARG n 1 146 GLU n 1 147 VAL n 1 148 THR n 1 149 VAL n 1 150 THR n 1 151 VAL n 1 152 LEU n 1 153 SER n 1 154 ARG n 1 155 LYS n 1 156 LEU n 1 157 CYS n 1 158 ASN n 1 159 SER n 1 160 GLN n 1 161 SER n 1 162 TYR n 1 163 TYR n 1 164 ASN n 1 165 GLY n 1 166 ASP n 1 167 PRO n 1 168 PHE n 1 169 ILE n 1 170 THR n 1 171 LYS n 1 172 ASP n 1 173 MET n 1 174 VAL n 1 175 CYS n 1 176 ALA n 1 177 GLY n 1 178 ASP n 1 179 ALA n 1 180 LYS n 1 181 GLY n 1 182 GLN n 1 183 LYS n 1 184 ASP n 1 185 SER n 1 186 CYS n 1 187 LYS n 1 188 GLY n 1 189 ASP n 1 190 ALA n 1 191 GLY n 1 192 GLY n 1 193 PRO n 1 194 LEU n 1 195 ILE n 1 196 CYS n 1 197 LYS n 1 198 GLY n 1 199 VAL n 1 200 PHE n 1 201 HIS n 1 202 ALA n 1 203 ILE n 1 204 VAL n 1 205 SER n 1 206 GLY n 1 207 GLY n 1 208 HIS n 1 209 GLU n 1 210 CYS n 1 211 GLY n 1 212 VAL n 1 213 ALA n 1 214 THR n 1 215 LYS n 1 216 PRO n 1 217 GLY n 1 218 ILE n 1 219 TYR n 1 220 THR n 1 221 LEU n 1 222 LEU n 1 223 THR n 1 224 LYS n 1 225 LYS n 1 226 TYR n 1 227 GLN n 1 228 THR n 1 229 TRP n 1 230 ILE n 1 231 LYS n 1 232 SER n 1 233 ASN n 1 234 LEU n 1 235 VAL n 1 236 PRO n 1 237 PRO n 1 238 HIS n 1 239 THR n 1 240 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'bone marrow' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24c+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 14 14 MET MET A . n A 1 2 GLU 2 15 15 GLU GLU A . n A 1 3 ILE 3 16 16 ILE ILE A . n A 1 4 ILE 4 17 17 ILE ILE A . n A 1 5 GLY 5 18 18 GLY GLY A . n A 1 6 GLY 6 19 19 GLY GLY A . n A 1 7 LYS 7 20 20 LYS LYS A . n A 1 8 GLU 8 21 21 GLU GLU A . n A 1 9 VAL 9 22 22 VAL VAL A . n A 1 10 SER 10 23 23 SER SER A . n A 1 11 PRO 11 24 24 PRO PRO A . n A 1 12 HIS 12 25 25 HIS HIS A . n A 1 13 SER 13 26 26 SER SER A . n A 1 14 ARG 14 27 27 ARG ARG A . n A 1 15 PRO 15 28 28 PRO PRO A . n A 1 16 PHE 16 29 29 PHE PHE A . n A 1 17 MET 17 30 30 MET MET A . n A 1 18 ALA 18 31 31 ALA ALA A . n A 1 19 SER 19 32 32 SER SER A . n A 1 20 ILE 20 33 33 ILE ILE A . n A 1 21 GLN 21 34 34 GLN GLN A . n A 1 22 TYR 22 35 35 TYR TYR A . n A 1 23 GLY 23 37 37 GLY GLY A . n A 1 24 GLY 24 38 38 GLY GLY A . n A 1 25 HIS 25 39 39 HIS HIS A . n A 1 26 HIS 26 40 40 HIS HIS A . n A 1 27 VAL 27 41 41 VAL VAL A . n A 1 28 CYS 28 42 42 CYS CYS A . n A 1 29 GLY 29 43 43 GLY GLY A . n A 1 30 GLY 30 44 44 GLY GLY A . n A 1 31 VAL 31 45 45 VAL VAL A . n A 1 32 LEU 32 46 46 LEU LEU A . n A 1 33 ILE 33 47 47 ILE ILE A . n A 1 34 ASP 34 48 48 ASP ASP A . n A 1 35 PRO 35 49 49 PRO PRO A . n A 1 36 GLN 36 50 50 GLN GLN A . n A 1 37 TRP 37 51 51 TRP TRP A . n A 1 38 VAL 38 52 52 VAL VAL A . n A 1 39 LEU 39 53 53 LEU LEU A . n A 1 40 THR 40 54 54 THR THR A . n A 1 41 ALA 41 55 55 ALA ALA A . n A 1 42 ALA 42 56 56 ALA ALA A . n A 1 43 HIS 43 57 57 HIS HIS A . n A 1 44 CYS 44 58 58 CYS CYS A . n A 1 45 GLN 45 59 59 GLN GLN A . n A 1 46 TYR 46 60 60 TYR TYR A . n A 1 47 ARG 47 60 60 ARG ARG A A n A 1 48 PHE 48 60 60 PHE PHE A B n A 1 49 THR 49 60 60 THR THR A C n A 1 50 LYS 50 60 60 LYS LYS A D n A 1 51 GLY 51 61 61 GLY GLY A . n A 1 52 GLN 52 62 62 GLN GLN A . n A 1 53 SER 53 63 63 SER SER A . n A 1 54 PRO 54 64 64 PRO PRO A . n A 1 55 THR 55 65 65 THR THR A . n A 1 56 VAL 56 66 66 VAL VAL A . n A 1 57 VAL 57 67 67 VAL VAL A . n A 1 58 LEU 58 68 68 LEU LEU A . n A 1 59 GLY 59 69 69 GLY GLY A . n A 1 60 ALA 60 70 70 ALA ALA A . n A 1 61 HIS 61 71 71 HIS HIS A . n A 1 62 SER 62 72 72 SER SER A . n A 1 63 LEU 63 73 73 LEU LEU A . n A 1 64 SER 64 74 74 SER SER A . n A 1 65 LYS 65 75 75 LYS LYS A . n A 1 66 ASN 66 76 76 ASN ASN A . n A 1 67 GLU 67 77 77 GLU GLU A . n A 1 68 ALA 68 78 78 ALA ALA A . n A 1 69 SER 69 79 79 SER SER A . n A 1 70 LYS 70 80 80 LYS LYS A . n A 1 71 GLN 71 81 81 GLN GLN A . n A 1 72 THR 72 82 82 THR THR A . n A 1 73 LEU 73 83 83 LEU LEU A . n A 1 74 GLU 74 84 84 GLU GLU A . n A 1 75 ILE 75 85 85 ILE ILE A . n A 1 76 LYS 76 86 86 LYS LYS A . n A 1 77 LYS 77 87 87 LYS LYS A . n A 1 78 PHE 78 88 88 PHE PHE A . n A 1 79 ILE 79 89 89 ILE ILE A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 PHE 81 91 91 PHE PHE A . n A 1 82 SER 82 92 92 SER SER A . n A 1 83 ARG 83 93 93 ARG ARG A . n A 1 84 VAL 84 94 94 VAL VAL A . n A 1 85 THR 85 95 95 THR THR A . n A 1 86 SER 86 96 96 SER SER A . n A 1 87 ASP 87 97 97 ASP ASP A . n A 1 88 PRO 88 98 98 PRO PRO A . n A 1 89 GLN 89 99 99 GLN GLN A . n A 1 90 SER 90 100 100 SER SER A . n A 1 91 ASN 91 101 101 ASN ASN A . n A 1 92 ASP 92 102 102 ASP ASP A . n A 1 93 ILE 93 103 103 ILE ILE A . n A 1 94 MET 94 104 104 MET MET A . n A 1 95 LEU 95 105 105 LEU LEU A . n A 1 96 VAL 96 106 106 VAL VAL A . n A 1 97 LYS 97 107 107 LYS LYS A . n A 1 98 LEU 98 108 108 LEU LEU A . n A 1 99 GLN 99 109 109 GLN GLN A . n A 1 100 THR 100 110 110 THR THR A . n A 1 101 ALA 101 111 111 ALA ALA A . n A 1 102 ALA 102 112 112 ALA ALA A . n A 1 103 LYS 103 113 113 LYS LYS A . n A 1 104 LEU 104 114 114 LEU LEU A . n A 1 105 ASN 105 115 115 ASN ASN A . n A 1 106 LYS 106 116 116 LYS LYS A . n A 1 107 HIS 107 117 117 HIS HIS A . n A 1 108 VAL 108 118 118 VAL VAL A . n A 1 109 LYS 109 119 119 LYS LYS A . n A 1 110 MET 110 120 120 MET MET A . n A 1 111 LEU 111 121 121 LEU LEU A . n A 1 112 HIS 112 122 122 HIS HIS A . n A 1 113 ILE 113 123 123 ILE ILE A . n A 1 114 ARG 114 124 124 ARG ARG A . n A 1 115 SER 115 125 125 SER SER A . n A 1 116 LYS 116 126 126 LYS LYS A . n A 1 117 THR 117 128 128 THR THR A . n A 1 118 SER 118 129 129 SER SER A . n A 1 119 LEU 119 130 130 LEU LEU A . n A 1 120 ARG 120 131 131 ARG ARG A . n A 1 121 SER 121 132 132 SER SER A . n A 1 122 GLY 122 133 133 GLY GLY A . n A 1 123 THR 123 134 134 THR THR A . n A 1 124 LYS 124 135 135 LYS LYS A . n A 1 125 CYS 125 136 136 CYS CYS A . n A 1 126 LYS 126 137 137 LYS LYS A . n A 1 127 VAL 127 138 138 VAL VAL A . n A 1 128 THR 128 139 139 THR THR A . n A 1 129 GLY 129 140 140 GLY GLY A . n A 1 130 TRP 130 141 141 TRP TRP A . n A 1 131 GLY 131 142 142 GLY GLY A . n A 1 132 ALA 132 143 143 ALA ALA A . n A 1 133 THR 133 144 144 THR THR A . n A 1 134 ASP 134 145 145 ASP ASP A . n A 1 135 PRO 135 146 146 PRO PRO A . n A 1 136 ASP 136 147 147 ASP ASP A . n A 1 137 SER 137 148 148 SER SER A . n A 1 138 LEU 138 148 148 LEU LEU A A n A 1 139 ARG 139 149 149 ARG ARG A . n A 1 140 PRO 140 151 151 PRO PRO A . n A 1 141 SER 141 152 152 SER SER A . n A 1 142 ASP 142 153 153 ASP ASP A . n A 1 143 THR 143 154 154 THR THR A . n A 1 144 LEU 144 155 155 LEU LEU A . n A 1 145 ARG 145 156 156 ARG ARG A . n A 1 146 GLU 146 157 157 GLU GLU A . n A 1 147 VAL 147 158 158 VAL VAL A . n A 1 148 THR 148 159 159 THR THR A . n A 1 149 VAL 149 160 160 VAL VAL A . n A 1 150 THR 150 161 161 THR THR A . n A 1 151 VAL 151 162 162 VAL VAL A . n A 1 152 LEU 152 163 163 LEU LEU A . n A 1 153 SER 153 164 164 SER SER A . n A 1 154 ARG 154 165 165 ARG ARG A . n A 1 155 LYS 155 166 166 LYS LYS A . n A 1 156 LEU 156 167 167 LEU LEU A . n A 1 157 CYS 157 168 168 CYS CYS A . n A 1 158 ASN 158 169 169 ASN ASN A . n A 1 159 SER 159 170 170 SER SER A . n A 1 160 GLN 160 170 170 GLN GLN A A n A 1 161 SER 161 170 170 SER SER A B n A 1 162 TYR 162 171 171 TYR TYR A . n A 1 163 TYR 163 172 172 TYR TYR A . n A 1 164 ASN 164 173 173 ASN ASN A . n A 1 165 GLY 165 173 173 GLY GLY A A n A 1 166 ASP 166 173 173 ASP ASP A B n A 1 167 PRO 167 174 174 PRO PRO A . n A 1 168 PHE 168 175 175 PHE PHE A . n A 1 169 ILE 169 176 176 ILE ILE A . n A 1 170 THR 170 177 177 THR THR A . n A 1 171 LYS 171 178 178 LYS LYS A . n A 1 172 ASP 172 179 179 ASP ASP A . n A 1 173 MET 173 180 180 MET MET A . n A 1 174 VAL 174 181 181 VAL VAL A . n A 1 175 CYS 175 182 182 CYS CYS A . n A 1 176 ALA 176 183 183 ALA ALA A . n A 1 177 GLY 177 184 184 GLY GLY A . n A 1 178 ASP 178 185 185 ASP ASP A . n A 1 179 ALA 179 186 186 ALA ALA A . n A 1 180 LYS 180 187 187 LYS LYS A . n A 1 181 GLY 181 188 188 GLY GLY A . n A 1 182 GLN 182 188 188 GLN GLN A A n A 1 183 LYS 183 188 188 LYS LYS A B n A 1 184 ASP 184 189 189 ASP ASP A . n A 1 185 SER 185 190 190 SER SER A . n A 1 186 CYS 186 191 191 CYS CYS A . n A 1 187 LYS 187 192 192 LYS LYS A . n A 1 188 GLY 188 193 193 GLY GLY A . n A 1 189 ASP 189 194 194 ASP ASP A . n A 1 190 ALA 190 195 195 ALA ALA A . n A 1 191 GLY 191 196 196 GLY GLY A . n A 1 192 GLY 192 197 197 GLY GLY A . n A 1 193 PRO 193 198 198 PRO PRO A . n A 1 194 LEU 194 199 199 LEU LEU A . n A 1 195 ILE 195 200 200 ILE ILE A . n A 1 196 CYS 196 201 201 CYS CYS A . n A 1 197 LYS 197 202 202 LYS LYS A . n A 1 198 GLY 198 205 205 GLY GLY A . n A 1 199 VAL 199 208 208 VAL VAL A . n A 1 200 PHE 200 209 209 PHE PHE A . n A 1 201 HIS 201 210 210 HIS HIS A . n A 1 202 ALA 202 211 211 ALA ALA A . n A 1 203 ILE 203 212 212 ILE ILE A . n A 1 204 VAL 204 213 213 VAL VAL A . n A 1 205 SER 205 214 214 SER SER A . n A 1 206 GLY 206 215 215 GLY GLY A . n A 1 207 GLY 207 216 216 GLY GLY A . n A 1 208 HIS 208 217 217 HIS HIS A . n A 1 209 GLU 209 219 219 GLU GLU A . n A 1 210 CYS 210 220 220 CYS CYS A . n A 1 211 GLY 211 221 221 GLY GLY A . n A 1 212 VAL 212 222 222 VAL VAL A . n A 1 213 ALA 213 223 223 ALA ALA A . n A 1 214 THR 214 223 223 THR THR A A n A 1 215 LYS 215 224 224 LYS LYS A . n A 1 216 PRO 216 225 225 PRO PRO A . n A 1 217 GLY 217 226 226 GLY GLY A . n A 1 218 ILE 218 227 227 ILE ILE A . n A 1 219 TYR 219 228 228 TYR TYR A . n A 1 220 THR 220 229 229 THR THR A . n A 1 221 LEU 221 230 230 LEU LEU A . n A 1 222 LEU 222 231 231 LEU LEU A . n A 1 223 THR 223 232 232 THR THR A . n A 1 224 LYS 224 232 232 LYS LYS A A n A 1 225 LYS 225 233 233 LYS LYS A . n A 1 226 TYR 226 234 234 TYR TYR A . n A 1 227 GLN 227 235 235 GLN GLN A . n A 1 228 THR 228 236 236 THR THR A . n A 1 229 TRP 229 237 237 TRP TRP A . n A 1 230 ILE 230 238 238 ILE ILE A . n A 1 231 LYS 231 239 239 LYS LYS A . n A 1 232 SER 232 240 240 SER SER A . n A 1 233 ASN 233 241 241 ASN ASN A . n A 1 234 LEU 234 242 242 LEU LEU A . n A 1 235 VAL 235 243 243 VAL VAL A . n A 1 236 PRO 236 244 244 PRO PRO A . n A 1 237 PRO 237 245 245 PRO PRO A . n A 1 238 HIS 238 246 246 HIS HIS A . n A 1 239 THR 239 247 247 THR THR A . n A 1 240 ASN 240 248 248 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 249 1 HOH TIP A . B 2 HOH 2 250 2 HOH TIP A . B 2 HOH 3 251 3 HOH TIP A . B 2 HOH 4 252 4 HOH TIP A . B 2 HOH 5 253 5 HOH TIP A . B 2 HOH 6 254 6 HOH TIP A . B 2 HOH 7 255 7 HOH TIP A . B 2 HOH 8 256 8 HOH TIP A . B 2 HOH 9 257 9 HOH TIP A . B 2 HOH 10 258 10 HOH TIP A . B 2 HOH 11 259 11 HOH TIP A . B 2 HOH 12 260 12 HOH TIP A . B 2 HOH 13 261 13 HOH TIP A . B 2 HOH 14 262 14 HOH TIP A . B 2 HOH 15 263 15 HOH TIP A . B 2 HOH 16 264 16 HOH TIP A . B 2 HOH 17 265 17 HOH TIP A . B 2 HOH 18 266 18 HOH TIP A . B 2 HOH 19 267 19 HOH TIP A . B 2 HOH 20 268 20 HOH TIP A . B 2 HOH 21 269 21 HOH TIP A . B 2 HOH 22 270 22 HOH TIP A . B 2 HOH 23 271 23 HOH TIP A . B 2 HOH 24 272 24 HOH TIP A . B 2 HOH 25 273 25 HOH TIP A . B 2 HOH 26 274 26 HOH TIP A . B 2 HOH 27 275 27 HOH TIP A . B 2 HOH 28 276 28 HOH TIP A . B 2 HOH 29 277 29 HOH TIP A . B 2 HOH 30 278 30 HOH TIP A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ILE 16 ? N ? A ILE 3 N 2 1 Y 0 A ILE 16 ? CA ? A ILE 3 CA 3 1 Y 0 A ILE 16 ? C ? A ILE 3 C 4 1 Y 0 A ILE 16 ? O ? A ILE 3 O 5 1 Y 0 A ILE 16 ? CB ? A ILE 3 CB 6 1 Y 0 A ILE 16 ? CG1 ? A ILE 3 CG1 7 1 Y 0 A ILE 16 ? CG2 ? A ILE 3 CG2 8 1 Y 0 A ILE 17 ? N ? A ILE 4 N 9 1 Y 0 A ILE 17 ? CA ? A ILE 4 CA 10 1 Y 0 A ILE 17 ? C ? A ILE 4 C 11 1 Y 0 A ILE 17 ? O ? A ILE 4 O 12 1 Y 0 A ILE 17 ? CB ? A ILE 4 CB 13 1 Y 0 A ILE 17 ? CG1 ? A ILE 4 CG1 14 1 Y 0 A ILE 17 ? CG2 ? A ILE 4 CG2 15 1 Y 0 A LYS 20 ? CG ? A LYS 7 CG 16 1 Y 0 A LYS 20 ? CD ? A LYS 7 CD 17 1 Y 0 A LYS 20 ? CE ? A LYS 7 CE 18 1 Y 0 A LYS 20 ? NZ ? A LYS 7 NZ 19 1 Y 0 A HIS 39 ? CG ? A HIS 25 CG 20 1 Y 0 A HIS 39 ? ND1 ? A HIS 25 ND1 21 1 Y 0 A HIS 39 ? CD2 ? A HIS 25 CD2 22 1 Y 0 A HIS 39 ? CE1 ? A HIS 25 CE1 23 1 Y 0 A HIS 39 ? NE2 ? A HIS 25 NE2 24 1 Y 0 A LYS 60 D CG ? A LYS 50 CG 25 1 Y 0 A LYS 60 D CD ? A LYS 50 CD 26 1 Y 0 A LYS 60 D CE ? A LYS 50 CE 27 1 Y 0 A LYS 60 D NZ ? A LYS 50 NZ 28 1 Y 0 A SER 63 ? CB ? A SER 53 CB 29 1 Y 0 A SER 63 ? OG ? A SER 53 OG 30 1 Y 0 A SER 74 ? OG ? A SER 64 OG 31 1 Y 0 A LYS 75 ? CE ? A LYS 65 CE 32 1 Y 0 A LYS 75 ? NZ ? A LYS 65 NZ 33 1 Y 0 A LYS 86 ? CB ? A LYS 76 CB 34 1 Y 0 A LYS 86 ? CG ? A LYS 76 CG 35 1 Y 0 A LYS 86 ? CD ? A LYS 76 CD 36 1 Y 0 A LYS 86 ? CE ? A LYS 76 CE 37 1 Y 0 A LYS 86 ? NZ ? A LYS 76 NZ 38 1 Y 0 A LYS 87 ? CD ? A LYS 77 CD 39 1 Y 0 A LYS 87 ? CE ? A LYS 77 CE 40 1 Y 0 A LYS 87 ? NZ ? A LYS 77 NZ 41 1 Y 0 A ARG 93 ? CG ? A ARG 83 CG 42 1 Y 0 A ARG 93 ? CD ? A ARG 83 CD 43 1 Y 0 A ARG 93 ? NE ? A ARG 83 NE 44 1 Y 0 A ARG 93 ? CZ ? A ARG 83 CZ 45 1 Y 0 A ARG 93 ? NH1 ? A ARG 83 NH1 46 1 Y 0 A ARG 93 ? NH2 ? A ARG 83 NH2 47 1 Y 0 A GLN 99 ? CD ? A GLN 89 CD 48 1 Y 0 A GLN 99 ? OE1 ? A GLN 89 OE1 49 1 Y 0 A GLN 99 ? NE2 ? A GLN 89 NE2 50 1 Y 0 A SER 100 ? CB ? A SER 90 CB 51 1 Y 0 A SER 100 ? OG ? A SER 90 OG 52 1 Y 0 A GLN 109 ? CD ? A GLN 99 CD 53 1 Y 0 A GLN 109 ? OE1 ? A GLN 99 OE1 54 1 Y 0 A GLN 109 ? NE2 ? A GLN 99 NE2 55 1 Y 0 A LYS 113 ? CG ? A LYS 103 CG 56 1 Y 0 A LYS 113 ? CD ? A LYS 103 CD 57 1 Y 0 A LYS 113 ? CE ? A LYS 103 CE 58 1 Y 0 A LYS 113 ? NZ ? A LYS 103 NZ 59 1 Y 0 A LYS 119 ? CG ? A LYS 109 CG 60 1 Y 0 A LYS 119 ? CD ? A LYS 109 CD 61 1 Y 0 A LYS 119 ? CE ? A LYS 109 CE 62 1 Y 0 A LYS 119 ? NZ ? A LYS 109 NZ 63 1 Y 0 A MET 120 ? CE ? A MET 110 CE 64 1 Y 0 A LYS 135 ? CG ? A LYS 124 CG 65 1 Y 0 A LYS 135 ? CD ? A LYS 124 CD 66 1 Y 0 A LYS 135 ? CE ? A LYS 124 CE 67 1 Y 0 A LYS 135 ? NZ ? A LYS 124 NZ 68 1 Y 0 A LYS 137 ? CG ? A LYS 126 CG 69 1 Y 0 A LYS 137 ? CD ? A LYS 126 CD 70 1 Y 0 A LYS 137 ? CE ? A LYS 126 CE 71 1 Y 0 A LYS 137 ? NZ ? A LYS 126 NZ 72 1 Y 0 A ASP 145 ? CB ? A ASP 134 CB 73 1 Y 0 A ASP 145 ? CG ? A ASP 134 CG 74 1 Y 0 A ASP 145 ? OD1 ? A ASP 134 OD1 75 1 Y 0 A ASP 145 ? OD2 ? A ASP 134 OD2 76 1 Y 0 A SER 148 ? CB ? A SER 137 CB 77 1 Y 0 A SER 148 ? OG ? A SER 137 OG 78 1 Y 0 A GLN 170 A CB ? A GLN 160 CB 79 1 Y 0 A GLN 170 A CG ? A GLN 160 CG 80 1 Y 0 A GLN 170 A CD ? A GLN 160 CD 81 1 Y 0 A GLN 170 A OE1 ? A GLN 160 OE1 82 1 Y 0 A GLN 170 A NE2 ? A GLN 160 NE2 83 1 Y 0 A LYS 187 ? CD ? A LYS 180 CD 84 1 Y 0 A LYS 187 ? CE ? A LYS 180 CE 85 1 Y 0 A LYS 187 ? NZ ? A LYS 180 NZ 86 1 Y 0 A ASP 189 ? CB ? A ASP 184 CB 87 1 Y 0 A ASP 189 ? CG ? A ASP 184 CG 88 1 Y 0 A ASP 189 ? OD1 ? A ASP 184 OD1 89 1 Y 0 A ASP 189 ? OD2 ? A ASP 184 OD2 90 1 Y 0 A LYS 224 ? CD ? A LYS 215 CD 91 1 Y 0 A LYS 224 ? CE ? A LYS 215 CE 92 1 Y 0 A LYS 224 ? NZ ? A LYS 215 NZ 93 1 Y 0 A LYS 239 ? CG ? A LYS 231 CG 94 1 Y 0 A LYS 239 ? CD ? A LYS 231 CD 95 1 Y 0 A LYS 239 ? CE ? A LYS 231 CE 96 1 Y 0 A LYS 239 ? NZ ? A LYS 231 NZ 97 1 Y 0 A PRO 245 ? C ? A PRO 237 C 98 1 Y 0 A PRO 245 ? O ? A PRO 237 O 99 1 Y 0 A ASN 248 ? N ? A ASN 240 N 100 1 Y 0 A ASN 248 ? CA ? A ASN 240 CA 101 1 Y 0 A ASN 248 ? C ? A ASN 240 C 102 1 Y 0 A ASN 248 ? CB ? A ASN 240 CB 103 1 Y 0 A ASN 248 ? CG ? A ASN 240 CG 104 1 Y 0 A ASN 248 ? OD1 ? A ASN 240 OD1 105 1 Y 0 A ASN 248 ? ND2 ? A ASN 240 ND2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 CCP4 'data reduction' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 CCP4 'data scaling' . ? 5 # _cell.entry_id 1MZD _cell.length_a 31.750 _cell.length_b 78.860 _cell.length_c 85.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MZD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1MZD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.73 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_details ;1.6M sodium formate, 2.5mM 2-[N-morpholino]ethane-sulfonic acid, 50mM sodium chloride, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 291 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CuK alpha' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1MZD _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 50 _reflns.number_all 39313 _reflns.number_obs 10537 _reflns.percent_possible_obs 88.8 _reflns.pdbx_Rmerge_I_obs 0.147 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 92.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 477 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1MZD _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 22 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 4549 _refine.ls_number_reflns_obs 498 _refine.ls_number_reflns_R_free 498 _refine.ls_percent_reflns_obs 88.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.223642 _refine.ls_R_factor_R_free 0.316738 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'granzyme B' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_mean 26.8 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1829 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1859 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 1.28094 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.006722 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1MZD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1MZD _struct.title 'crystal structure of human pro-granzyme K' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1MZD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'granzyme, apoptosis, serine protease, S1 family, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRAK_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ SYYNGDPFITKDMVCAGDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_accession P49863 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1MZD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 240 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49863 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 14 _struct_ref_seq.pdbx_auth_seq_align_end 248 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1MZD _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 190 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P49863 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 214 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 195 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 153 ? ASN A 158 ? SER A 164 ASN A 169 1 ? 6 HELX_P HELX_P2 2 THR A 223 ? VAL A 235 ? THR A 232 VAL A 243 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 125 SG ? ? ? 1_555 A CYS 196 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 175 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? A CYS 186 SG ? ? ? 1_555 A CYS 210 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.040 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 166 A . B ASP 173 A PRO 167 A ? PRO 174 A 1 0.05 2 VAL 235 A . ? VAL 243 A PRO 236 A ? PRO 244 A 1 0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 7 ? GLU A 8 ? LYS A 20 GLU A 21 A 2 ARG A 145 ? VAL A 151 ? ARG A 156 VAL A 162 A 3 LYS A 124 ? GLY A 129 ? LYS A 135 GLY A 140 A 4 PRO A 193 ? CYS A 196 ? PRO A 198 CYS A 201 A 5 VAL A 199 ? VAL A 204 ? VAL A 208 VAL A 213 A 6 GLY A 217 ? LEU A 221 ? GLY A 226 LEU A 230 A 7 MET A 173 ? GLY A 177 ? MET A 180 GLY A 184 A 8 ARG A 145 ? VAL A 151 ? ARG A 156 VAL A 162 B 1 HIS A 25 ? CYS A 28 ? HIS A 39 CYS A 42 B 2 SER A 19 ? TYR A 22 ? SER A 32 TYR A 35 B 3 PRO A 54 ? LEU A 58 ? PRO A 64 LEU A 68 B 4 GLN A 71 ? PRO A 80 ? GLN A 81 PRO A 90 B 5 MET A 94 ? LEU A 98 ? MET A 104 LEU A 108 B 6 TRP A 37 ? THR A 40 ? TRP A 51 THR A 54 B 7 VAL A 31 ? ASP A 34 ? VAL A 45 ASP A 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 7 ? O LYS A 20 N GLU A 146 ? N GLU A 157 A 2 3 N VAL A 149 ? N VAL A 160 O CYS A 125 ? O CYS A 136 A 3 4 N THR A 128 ? N THR A 139 O PRO A 193 ? O PRO A 198 A 4 5 N CYS A 196 ? N CYS A 201 O VAL A 199 ? O VAL A 208 A 5 6 O ILE A 203 ? O ILE A 212 N THR A 220 ? N THR A 229 A 6 7 O TYR A 219 ? O TYR A 228 N VAL A 174 ? N VAL A 181 A 7 8 N GLY A 177 ? N GLY A 184 O THR A 150 ? O THR A 161 B 1 2 N VAL A 27 ? N VAL A 41 O ILE A 20 ? O ILE A 33 B 2 3 O GLN A 21 ? O GLN A 34 N THR A 55 ? N THR A 65 B 3 4 N LEU A 58 ? N LEU A 68 O GLN A 71 ? O GLN A 81 B 4 5 O ILE A 79 ? O ILE A 89 N LEU A 95 ? N LEU A 105 B 5 6 N VAL A 96 ? N VAL A 106 O VAL A 38 ? O VAL A 52 B 6 7 N LEU A 39 ? N LEU A 53 O VAL A 31 ? O VAL A 45 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 16 ? ? 63.04 125.23 2 1 PRO A 24 ? ? -33.07 120.37 3 1 PRO A 28 ? ? -42.08 -11.48 4 1 ASP A 48 ? ? -172.44 141.48 5 1 PRO A 49 ? ? -30.79 -33.79 6 1 CYS A 58 ? ? -66.15 7.15 7 1 PHE A 60 B ? -91.36 48.35 8 1 GLN A 62 ? ? 57.65 74.28 9 1 SER A 63 ? ? -38.03 107.05 10 1 VAL A 94 ? ? 67.27 -70.96 11 1 THR A 95 ? ? -129.41 -70.39 12 1 SER A 96 ? ? 52.46 -145.05 13 1 GLN A 99 ? ? -116.79 -110.18 14 1 SER A 100 ? ? -54.28 -176.79 15 1 ASP A 102 ? ? -69.61 74.21 16 1 ASN A 115 ? ? -120.61 -161.55 17 1 SER A 125 ? ? -125.18 -127.47 18 1 TYR A 171 ? ? -106.72 -132.55 19 1 ASN A 173 ? ? 39.72 56.52 20 1 ASP A 189 ? ? -83.50 -71.21 21 1 CYS A 191 ? ? -110.69 -129.18 22 1 LYS A 224 ? ? -117.11 72.31 23 1 PRO A 245 ? ? -89.16 -129.45 24 1 HIS A 246 ? ? -141.35 26.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 A MET 14 ? A MET 1 2 1 Y 0 A GLU 15 ? A GLU 2 3 1 Y 0 A GLY 18 ? A GLY 5 4 1 Y 0 A VAL 94 ? A VAL 84 5 1 Y 0 A THR 95 ? A THR 85 6 1 Y 0 A SER 96 ? A SER 86 7 1 Y 0 A ASP 97 ? A ASP 87 8 1 Y 0 A PRO 98 ? A PRO 88 9 1 Y 0 A HIS 246 ? A HIS 238 10 1 Y 0 A THR 247 ? A THR 239 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_initial_refinement_model.accession_code 1FQ3 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'granzyme B' # _atom_sites.entry_id 1MZD _atom_sites.fract_transf_matrix[1][1] 0.031496 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012681 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_