HEADER OXIDOREDUCTASE 09-OCT-02 1MZR TITLE STRUCTURE OF DKGA FROM E.COLI AT 2.13 A RESOLUTION SOLVED BY MOLECULAR TITLE 2 REPLACEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,5-DIKETO-D-GLUCONATE REDUCTASE A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YQHE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS ALPHA/BETA-BARREL, ALDO-KETOREDUCTASE, NADPH DEPENDANT, BACTERIAL KEYWDS 2 TARGETS AT IGS-CNRS, FRANCE, BIGS, STRUCTURAL GENOMICS, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ABERGEL,S.JEUDY,V.MONCHOIS,J.M.CLAVERIE,BACTERIAL TARGETS AT IGS- AUTHOR 2 CNRS,FRANCE (BIGS) REVDAT 4 25-OCT-23 1MZR 1 REMARK SEQADV REVDAT 3 13-JUL-11 1MZR 1 VERSN REVDAT 2 24-FEB-09 1MZR 1 VERSN REVDAT 1 28-OCT-03 1MZR 0 JRNL AUTH S.JEUDY,V.MONCHOIS,C.MAZA,J.M.CLAVERIE,C.ABERGEL JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI DKGA, A JRNL TITL 2 BROAD-SPECIFICITY ALDO-KETO REDUCTASE. JRNL REF PROTEINS V. 62 302 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16284956 JRNL DOI 10.1002/PROT.20710 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 43824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4271 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 726 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.75000 REMARK 3 B22 (A**2) : 9.71000 REMARK 3 B33 (A**2) : -2.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : MONOCHROMATOR 0.98 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1A80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM PHOSPHATE, SODIUM PHOSPHATE, REMARK 280 HEPES, GLYCEROL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.75550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.75550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.58850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.84850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.58850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.84850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.75550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.58850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.84850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.75550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.58850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.84850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 730 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 SER A -18 REMARK 465 TYR A -17 REMARK 465 TYR A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 SER A -7 REMARK 465 THR A -6 REMARK 465 SER A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 LYS A -2 REMARK 465 LYS A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 MET B -19 REMARK 465 SER B -18 REMARK 465 TYR B -17 REMARK 465 TYR B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 SER B -7 REMARK 465 THR B -6 REMARK 465 SER B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 LYS B -2 REMARK 465 LYS B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG B 249 NE ARG B 249 3655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 24 -139.14 -110.02 REMARK 500 ALA A 26 156.26 -7.45 REMARK 500 GLN A 192 82.14 37.71 REMARK 500 VAL A 197 -63.38 -130.26 REMARK 500 SER A 233 145.45 -172.86 REMARK 500 TRP B 24 -131.35 -104.35 REMARK 500 ALA B 26 156.68 167.84 REMARK 500 ARG B 85 53.09 -144.23 REMARK 500 MET B 168 85.42 -154.31 REMARK 500 GLN B 192 85.35 52.77 REMARK 500 VAL B 197 -59.58 -122.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 911 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ASG-YQHE RELATED DB: TARGETDB DBREF 1MZR A 3 276 UNP Q46857 DKGA_ECOLI 2 275 DBREF 1MZR B 3 276 UNP Q46857 DKGA_ECOLI 2 275 SEQADV 1MZR MET A -19 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER A -18 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR A -17 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR A -16 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -15 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -14 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -13 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -12 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -11 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS A -10 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU A -9 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR GLU A -8 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER A -7 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR THR A -6 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER A -5 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU A -4 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR A -3 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LYS A -2 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LYS A -1 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR ALA A 0 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR GLY A 1 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU A 2 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR MET B -19 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER B -18 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR B -17 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR B -16 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -15 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -14 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -13 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -12 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -11 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR HIS B -10 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU B -9 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR GLU B -8 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER B -7 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR THR B -6 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR SER B -5 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU B -4 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR TYR B -3 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LYS B -2 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LYS B -1 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR ALA B 0 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR GLY B 1 UNP Q46857 CLONING ARTIFACT SEQADV 1MZR LEU B 2 UNP Q46857 CLONING ARTIFACT SEQRES 1 A 296 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 296 THR SER LEU TYR LYS LYS ALA GLY LEU ALA ASN PRO THR SEQRES 3 A 296 VAL ILE LYS LEU GLN ASP GLY ASN VAL MET PRO GLN LEU SEQRES 4 A 296 GLY LEU GLY VAL TRP GLN ALA SER ASN GLU GLU VAL ILE SEQRES 5 A 296 THR ALA ILE GLN LYS ALA LEU GLU VAL GLY TYR ARG SER SEQRES 6 A 296 ILE ASP THR ALA ALA ALA TYR LYS ASN GLU GLU GLY VAL SEQRES 7 A 296 GLY LYS ALA LEU LYS ASN ALA SER VAL ASN ARG GLU GLU SEQRES 8 A 296 LEU PHE ILE THR THR LYS LEU TRP ASN ASP ASP HIS LYS SEQRES 9 A 296 ARG PRO ARG GLU ALA LEU LEU ASP SER LEU LYS LYS LEU SEQRES 10 A 296 GLN LEU ASP TYR ILE ASP LEU TYR LEU MET HIS TRP PRO SEQRES 11 A 296 VAL PRO ALA ILE ASP HIS TYR VAL GLU ALA TRP LYS GLY SEQRES 12 A 296 MET ILE GLU LEU GLN LYS GLU GLY LEU ILE LYS SER ILE SEQRES 13 A 296 GLY VAL CYS ASN PHE GLN ILE HIS HIS LEU GLN ARG LEU SEQRES 14 A 296 ILE ASP GLU THR GLY VAL THR PRO VAL ILE ASN GLN ILE SEQRES 15 A 296 GLU LEU HIS PRO LEU MET GLN GLN ARG GLN LEU HIS ALA SEQRES 16 A 296 TRP ASN ALA THR HIS LYS ILE GLN THR GLU SER TRP SER SEQRES 17 A 296 PRO LEU ALA GLN GLY GLY LYS GLY VAL PHE ASP GLN LYS SEQRES 18 A 296 VAL ILE ARG ASP LEU ALA ASP LYS TYR GLY LYS THR PRO SEQRES 19 A 296 ALA GLN ILE VAL ILE ARG TRP HIS LEU ASP SER GLY LEU SEQRES 20 A 296 VAL VAL ILE PRO LYS SER VAL THR PRO SER ARG ILE ALA SEQRES 21 A 296 GLU ASN PHE ASP VAL TRP ASP PHE ARG LEU ASP LYS ASP SEQRES 22 A 296 GLU LEU GLY GLU ILE ALA LYS LEU ASP GLN GLY LYS ARG SEQRES 23 A 296 LEU GLY PRO ASP PRO ASP GLN PHE GLY GLY SEQRES 1 B 296 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 B 296 THR SER LEU TYR LYS LYS ALA GLY LEU ALA ASN PRO THR SEQRES 3 B 296 VAL ILE LYS LEU GLN ASP GLY ASN VAL MET PRO GLN LEU SEQRES 4 B 296 GLY LEU GLY VAL TRP GLN ALA SER ASN GLU GLU VAL ILE SEQRES 5 B 296 THR ALA ILE GLN LYS ALA LEU GLU VAL GLY TYR ARG SER SEQRES 6 B 296 ILE ASP THR ALA ALA ALA TYR LYS ASN GLU GLU GLY VAL SEQRES 7 B 296 GLY LYS ALA LEU LYS ASN ALA SER VAL ASN ARG GLU GLU SEQRES 8 B 296 LEU PHE ILE THR THR LYS LEU TRP ASN ASP ASP HIS LYS SEQRES 9 B 296 ARG PRO ARG GLU ALA LEU LEU ASP SER LEU LYS LYS LEU SEQRES 10 B 296 GLN LEU ASP TYR ILE ASP LEU TYR LEU MET HIS TRP PRO SEQRES 11 B 296 VAL PRO ALA ILE ASP HIS TYR VAL GLU ALA TRP LYS GLY SEQRES 12 B 296 MET ILE GLU LEU GLN LYS GLU GLY LEU ILE LYS SER ILE SEQRES 13 B 296 GLY VAL CYS ASN PHE GLN ILE HIS HIS LEU GLN ARG LEU SEQRES 14 B 296 ILE ASP GLU THR GLY VAL THR PRO VAL ILE ASN GLN ILE SEQRES 15 B 296 GLU LEU HIS PRO LEU MET GLN GLN ARG GLN LEU HIS ALA SEQRES 16 B 296 TRP ASN ALA THR HIS LYS ILE GLN THR GLU SER TRP SER SEQRES 17 B 296 PRO LEU ALA GLN GLY GLY LYS GLY VAL PHE ASP GLN LYS SEQRES 18 B 296 VAL ILE ARG ASP LEU ALA ASP LYS TYR GLY LYS THR PRO SEQRES 19 B 296 ALA GLN ILE VAL ILE ARG TRP HIS LEU ASP SER GLY LEU SEQRES 20 B 296 VAL VAL ILE PRO LYS SER VAL THR PRO SER ARG ILE ALA SEQRES 21 B 296 GLU ASN PHE ASP VAL TRP ASP PHE ARG LEU ASP LYS ASP SEQRES 22 B 296 GLU LEU GLY GLU ILE ALA LYS LEU ASP GLN GLY LYS ARG SEQRES 23 B 296 LEU GLY PRO ASP PRO ASP GLN PHE GLY GLY HET PO4 A 900 5 HET PO4 A 901 5 HET GOL A 910 6 HET GOL A 911 6 HET PO4 B 902 5 HET PO4 B 904 5 HET PO4 B 905 5 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 5(O4 P 3-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 10 HOH *583(H2 O) HELIX 1 1 SER A 27 GLY A 42 1 16 HELIX 2 2 ALA A 49 LYS A 53 5 5 HELIX 3 3 ASN A 54 ALA A 65 1 12 HELIX 4 4 ASN A 68 LEU A 72 5 5 HELIX 5 5 TRP A 79 HIS A 83 5 5 HELIX 6 6 ARG A 85 GLN A 98 1 14 HELIX 7 7 HIS A 116 GLU A 130 1 15 HELIX 8 8 GLN A 142 GLY A 154 1 13 HELIX 9 9 GLN A 170 HIS A 180 1 11 HELIX 10 10 GLN A 200 GLY A 211 1 12 HELIX 11 11 THR A 213 SER A 225 1 13 HELIX 12 12 THR A 235 ASN A 242 1 8 HELIX 13 13 ASP A 251 LYS A 260 1 10 HELIX 14 14 SER B 27 GLY B 42 1 16 HELIX 15 15 ALA B 49 LYS B 53 5 5 HELIX 16 16 ASN B 54 ALA B 65 1 12 HELIX 17 17 ASN B 68 LEU B 72 5 5 HELIX 18 18 TRP B 79 HIS B 83 5 5 HELIX 19 19 ARG B 85 GLN B 98 1 14 HELIX 20 20 HIS B 116 GLU B 130 1 15 HELIX 21 21 GLN B 142 GLY B 154 1 13 HELIX 22 22 GLN B 170 HIS B 180 1 11 HELIX 23 23 GLN B 200 GLY B 211 1 12 HELIX 24 24 THR B 213 SER B 225 1 13 HELIX 25 25 THR B 235 ASP B 244 1 10 HELIX 26 26 ASP B 251 LYS B 260 1 10 SHEET 1 A 2 VAL A 7 LYS A 9 0 SHEET 2 A 2 VAL A 15 PRO A 17 -1 O MET A 16 N ILE A 8 SHEET 1 B 8 LEU A 21 GLY A 22 0 SHEET 2 B 8 SER A 45 ASP A 47 1 O ASP A 47 N LEU A 21 SHEET 3 B 8 PHE A 73 LEU A 78 1 O THR A 75 N ILE A 46 SHEET 4 B 8 ILE A 102 MET A 107 1 O LEU A 106 N LEU A 78 SHEET 5 B 8 ILE A 133 CYS A 139 1 O GLY A 137 N TYR A 105 SHEET 6 B 8 ILE A 159 GLU A 163 1 O GLN A 161 N VAL A 138 SHEET 7 B 8 GLN A 183 TRP A 187 1 O TRP A 187 N ILE A 162 SHEET 8 B 8 VAL A 228 VAL A 229 1 O VAL A 228 N SER A 186 SHEET 1 C 2 VAL B 7 LYS B 9 0 SHEET 2 C 2 VAL B 15 PRO B 17 -1 O MET B 16 N ILE B 8 SHEET 1 D 8 LEU B 21 GLY B 22 0 SHEET 2 D 8 SER B 45 ASP B 47 1 O ASP B 47 N LEU B 21 SHEET 3 D 8 PHE B 73 LEU B 78 1 O THR B 75 N ILE B 46 SHEET 4 D 8 ILE B 102 MET B 107 1 O LEU B 106 N LEU B 78 SHEET 5 D 8 ILE B 133 CYS B 139 1 O LYS B 134 N ILE B 102 SHEET 6 D 8 ILE B 159 GLU B 163 1 O GLN B 161 N VAL B 138 SHEET 7 D 8 GLN B 183 TRP B 187 1 O GLU B 185 N ILE B 162 SHEET 8 D 8 VAL B 228 VAL B 229 1 O VAL B 228 N SER B 186 SITE 1 AC1 7 SER A 188 PRO A 189 LEU A 190 PRO A 231 SITE 2 AC1 7 LYS A 232 HOH A 667 HOH A 677 SITE 1 AC2 4 SER A 233 VAL A 234 THR A 235 ARG A 238 SITE 1 AC3 8 SER B 188 PRO B 189 LEU B 190 ALA B 191 SITE 2 AC3 8 PRO B 231 LYS B 232 HOH B 639 HOH B 770 SITE 1 AC4 9 ARG A 171 GLN A 172 ASP A 262 HOH A 363 SITE 2 AC4 9 ARG B 171 GLN B 172 ASP B 262 HOH B 316 SITE 3 AC4 9 HOH B 398 SITE 1 AC5 7 LYS B 84 ARG B 85 PRO B 86 ARG B 87 SITE 2 AC5 7 HOH B 325 HOH B 412 HOH B 476 SITE 1 AC6 7 TRP A 24 TYR A 52 TRP A 79 HIS A 108 SITE 2 AC6 7 TRP A 109 HOH A 497 GOL A 911 SITE 1 AC7 3 GLN A 25 TRP A 79 GOL A 910 CRYST1 139.177 145.697 79.511 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012577 0.00000