HEADER TRANSCRIPTION 15-OCT-02 1N0Z TITLE SOLUTION STRUCTURE OF THE FIRST ZINC-FINGER DOMAIN FROM ZNF265 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZNF265; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZNF265-F1; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 265; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF265; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T KEYWDS ZINC FINGER, RNA SPLICING, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.A.PLAMBECK,K.FAIRLEY,A.H.Y.KWAN,B.J.WESTMAN,D.ADAMS,B.MORRIS, AUTHOR 2 J.P.MACKAY REVDAT 4 29-MAY-24 1N0Z 1 REMARK REVDAT 3 10-NOV-21 1N0Z 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1N0Z 1 VERSN REVDAT 1 22-JUL-03 1N0Z 0 JRNL AUTH C.A.PLAMBECK,A.H.Y.KWAN,D.J.ADAMS,B.J.WESTMAN, JRNL AUTH 2 L.VAN DER WEYDEN,R.L.MEDCALF,B.J.MORRIS,J.P.MACKAY JRNL TITL THE STRUCTURE OF THE ZINC FINGER DOMAIN FROM HUMAN SPLICING JRNL TITL 2 FACTOR ZNF265 FOLD JRNL REF J.BIOL.CHEM. V. 278 22805 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12657633 JRNL DOI 10.1074/JBC.M301896200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, DYANA 1.5 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT ET AL (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE PERFORMED REMARK 3 USING THE PACKAGE ARIA1.2 (AMBIGUOUS RESTRAINTS IN ITERATIVE REMARK 3 ASSIGNMENT). FINAL STRUCTURES ARE BASED ON 709 UNAMBIGUOUS NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS, 14 SETS OF AMBIGUOUS NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 22 ADDITIONAL DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1N0Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017383. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM ZNF265-F1, 2MM TCEP, 1.7MM REMARK 210 ZNZO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 SHORT MIXING TIME NOESY; SHORT REMARK 210 MIXING TIME TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 2D NMR REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 83.71 62.64 REMARK 500 1 ARG A 9 49.43 -91.59 REMARK 500 1 CYS A 22 -79.67 -90.42 REMARK 500 1 PHE A 27 -82.24 -45.41 REMARK 500 1 ALA A 28 -66.65 178.39 REMARK 500 1 LYS A 40 107.22 -59.19 REMARK 500 2 THR A 5 -89.32 62.66 REMARK 500 2 ILE A 16 -75.48 -135.40 REMARK 500 2 CYS A 22 -86.76 -119.41 REMARK 500 2 CYS A 36 -61.24 -93.26 REMARK 500 2 ARG A 38 -132.10 -175.73 REMARK 500 2 THR A 41 88.44 -69.86 REMARK 500 3 THR A 5 -133.02 -90.70 REMARK 500 3 VAL A 10 95.12 -66.95 REMARK 500 3 ILE A 16 -108.89 -111.88 REMARK 500 3 LYS A 20 150.66 72.46 REMARK 500 3 LYS A 21 39.01 -75.62 REMARK 500 3 CYS A 22 -78.60 -77.20 REMARK 500 3 PHE A 27 -80.84 -48.41 REMARK 500 3 ALA A 28 -59.32 179.81 REMARK 500 3 THR A 41 106.49 -46.71 REMARK 500 4 THR A 5 -106.91 -77.91 REMARK 500 4 LYS A 6 48.65 -100.80 REMARK 500 4 VAL A 10 133.54 78.25 REMARK 500 4 ILE A 16 138.98 71.11 REMARK 500 4 CYS A 22 -73.11 -97.06 REMARK 500 4 PHE A 27 -74.91 -65.27 REMARK 500 4 ALA A 28 -76.80 -179.09 REMARK 500 4 ARG A 29 42.79 -77.45 REMARK 500 4 LYS A 40 107.21 -58.60 REMARK 500 4 THR A 42 -42.76 -143.96 REMARK 500 5 MET A 3 -80.23 -104.08 REMARK 500 5 SER A 4 -100.67 54.86 REMARK 500 5 LYS A 6 69.41 -100.86 REMARK 500 5 PHE A 8 77.45 59.55 REMARK 500 5 LYS A 20 31.78 -77.62 REMARK 500 5 CYS A 22 -91.25 -98.65 REMARK 500 6 THR A 5 104.37 68.68 REMARK 500 6 PHE A 8 92.53 -65.73 REMARK 500 6 ILE A 16 -117.21 -98.80 REMARK 500 6 CYS A 22 -79.74 -88.02 REMARK 500 6 PHE A 27 -131.85 -73.75 REMARK 500 6 ALA A 28 -62.99 -140.09 REMARK 500 6 ARG A 29 41.61 -78.95 REMARK 500 6 ARG A 35 -68.26 -104.44 REMARK 500 6 PRO A 44 99.90 -65.83 REMARK 500 7 MET A 3 -52.69 73.10 REMARK 500 7 ASN A 7 -153.33 -100.40 REMARK 500 7 VAL A 10 25.68 -151.58 REMARK 500 7 SER A 11 -139.06 -102.05 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 46 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 CYS A 22 SG 107.9 REMARK 620 3 CYS A 33 SG 108.5 113.0 REMARK 620 4 CYS A 36 SG 110.1 107.8 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 46 DBREF 1N0Z A 3 42 UNP O95218 ZN265_HUMAN 1 40 SEQADV 1N0Z GLY A 1 UNP O95218 CLONING ARTIFACT SEQADV 1N0Z SER A 2 UNP O95218 CLONING ARTIFACT SEQADV 1N0Z ASP A 34 UNP O95218 ASN 32 ENGINEERED MUTATION SEQADV 1N0Z GLY A 43 UNP O95218 CLONING ARTIFACT SEQADV 1N0Z PRO A 44 UNP O95218 CLONING ARTIFACT SEQADV 1N0Z ILE A 45 UNP O95218 CLONING ARTIFACT SEQRES 1 A 45 GLY SER MET SER THR LYS ASN PHE ARG VAL SER ASP GLY SEQRES 2 A 45 ASP TRP ILE CYS PRO ASP LYS LYS CYS GLY ASN VAL ASN SEQRES 3 A 45 PHE ALA ARG ARG THR SER CYS ASP ARG CYS GLY ARG GLU SEQRES 4 A 45 LYS THR THR GLY PRO ILE HET ZN A 46 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ LINK SG CYS A 17 ZN ZN A 46 1555 1555 2.24 LINK SG CYS A 22 ZN ZN A 46 1555 1555 2.28 LINK SG CYS A 33 ZN ZN A 46 1555 1555 2.29 LINK SG CYS A 36 ZN ZN A 46 1555 1555 2.29 SITE 1 AC1 4 CYS A 17 CYS A 22 CYS A 33 CYS A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1