data_1N27 # _entry.id 1N27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1N27 pdb_00001n27 10.2210/pdb1n27/pdb RCSB RCSB017426 ? ? WWPDB D_1000017426 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007017903.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1N27 _pdbx_database_status.recvd_initial_deposition_date 2002-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Kobayashi, N.' 4 'Tochio, N.' 5 'Inoue, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the PWWP domain of the hepatoma-derived growth factor family.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 14 _citation.page_first 756 _citation.page_last 764 _citation.year 2005 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15689505 _citation.pdbx_database_id_DOI 10.1110/ps.04975305 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yabuki, T.' 5 ? primary 'Aoki, M.' 6 ? primary 'Seki, E.' 7 ? primary 'Matsuda, T.' 8 ? primary 'Fujikura, Y.' 9 ? primary 'Saito, M.' 10 ? primary 'Ikari, M.' 11 ? primary 'Watanabe, M.' 12 ? primary 'Terada, T.' 13 ? primary 'Shirouzu, M.' 14 ? primary 'Yoshida, M.' 15 ? primary 'Hirota, H.' 16 ? primary 'Tanaka, A.' 17 ? primary 'Hayashizaki, Y.' 18 ? primary 'Guntert, P.' 19 ? primary 'Kigawa, T.' 20 ? primary 'Yokoyama, S.' 21 ? # _cell.entry_id 1N27 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N27 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Hepatoma-derived growth factor, related protein 3' _entity.formula_weight 10649.930 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PWWP domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKG FNEGLWEIENSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKG FNEGLWEIENSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007017903.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 TYR n 1 10 LYS n 1 11 ALA n 1 12 GLY n 1 13 ASP n 1 14 LEU n 1 15 VAL n 1 16 PHE n 1 17 ALA n 1 18 LYS n 1 19 MET n 1 20 LYS n 1 21 GLY n 1 22 TYR n 1 23 PRO n 1 24 HIS n 1 25 TRP n 1 26 PRO n 1 27 ALA n 1 28 ARG n 1 29 ILE n 1 30 ASP n 1 31 GLU n 1 32 LEU n 1 33 PRO n 1 34 GLU n 1 35 GLY n 1 36 ALA n 1 37 VAL n 1 38 LYS n 1 39 PRO n 1 40 PRO n 1 41 ALA n 1 42 ASN n 1 43 LYS n 1 44 TYR n 1 45 PRO n 1 46 ILE n 1 47 PHE n 1 48 PHE n 1 49 PHE n 1 50 GLY n 1 51 THR n 1 52 HIS n 1 53 GLU n 1 54 THR n 1 55 ALA n 1 56 PHE n 1 57 LEU n 1 58 GLY n 1 59 PRO n 1 60 LYS n 1 61 ASP n 1 62 LEU n 1 63 PHE n 1 64 PRO n 1 65 TYR n 1 66 LYS n 1 67 GLU n 1 68 TYR n 1 69 LYS n 1 70 ASP n 1 71 LYS n 1 72 PHE n 1 73 GLY n 1 74 LYS n 1 75 SER n 1 76 ASN n 1 77 LYS n 1 78 ARG n 1 79 LYS n 1 80 GLY n 1 81 PHE n 1 82 ASN n 1 83 GLU n 1 84 GLY n 1 85 LEU n 1 86 TRP n 1 87 GLU n 1 88 ILE n 1 89 GLU n 1 90 ASN n 1 91 SER n 1 92 GLY n 1 93 PRO n 1 94 SER n 1 95 SER n 1 96 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 4632410H03 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P020408-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis system' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HDGR3_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWE IEN ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_accession Q9JMG7 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1N27 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9JMG7 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 90 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 90 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1N27 GLY A 1 ? UNP Q9JMG7 ? ? 'cloning artifact' 1 1 1 1N27 SER A 2 ? UNP Q9JMG7 ? ? 'cloning artifact' 2 2 1 1N27 SER A 3 ? UNP Q9JMG7 ? ? 'cloning artifact' 3 3 1 1N27 GLY A 4 ? UNP Q9JMG7 ? ? 'cloning artifact' 4 4 1 1N27 SER A 5 ? UNP Q9JMG7 ? ? 'cloning artifact' 5 5 1 1N27 SER A 6 ? UNP Q9JMG7 ? ? 'cloning artifact' 6 6 1 1N27 GLY A 7 ? UNP Q9JMG7 ? ? 'cloning artifact' 7 7 1 1N27 SER A 91 ? UNP Q9JMG7 ? ? 'cloning artifact' 91 8 1 1N27 GLY A 92 ? UNP Q9JMG7 ? ? 'cloning artifact' 92 9 1 1N27 PRO A 93 ? UNP Q9JMG7 ? ? 'cloning artifact' 93 10 1 1N27 SER A 94 ? UNP Q9JMG7 ? ? 'cloning artifact' 94 11 1 1N27 SER A 95 ? UNP Q9JMG7 ? ? 'cloning artifact' 95 12 1 1N27 GLY A 96 ? UNP Q9JMG7 ? ? 'cloning artifact' 96 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.7mM PWWP domain U-15N,13C; 20mM phosphate buffer NA; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1N27 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1N27 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy,target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1N27 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.613 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.6 'structure solution' 'Guentert, P.' 5 OPALp ? refinement 'Koradi, R., Billeter, M., Guentert, P.' 6 # _exptl.entry_id 1N27 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1N27 _struct.title 'Solution structure of the PWWP domain of mouse Hepatoma-derived growth factor, related protein 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1N27 _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text ;Nuclear translocation, HDGF family, hath, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HORMONE-GROWTH FACTOR COMPLEX ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 59 ? ASP A 61 ? PRO A 59 ASP A 61 5 ? 3 HELX_P HELX_P2 2 TYR A 65 ? TYR A 68 ? TYR A 65 TYR A 68 1 ? 4 HELX_P HELX_P3 3 PHE A 81 ? ASN A 90 ? PHE A 81 ASN A 90 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 53 ? LEU A 57 ? GLU A 53 LEU A 57 A 2 TYR A 44 ? PHE A 48 ? TYR A 44 PHE A 48 A 3 HIS A 24 ? ILE A 29 ? HIS A 24 ILE A 29 A 4 LEU A 14 ? LYS A 18 ? LEU A 14 LYS A 18 A 5 LEU A 62 ? PRO A 64 ? LEU A 62 PRO A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 55 ? O ALA A 55 N ILE A 46 ? N ILE A 46 A 2 3 N PHE A 47 ? N PHE A 47 O ARG A 28 ? O ARG A 28 A 3 4 O ALA A 27 ? O ALA A 27 N VAL A 15 ? N VAL A 15 A 4 5 N PHE A 16 ? N PHE A 16 O PHE A 63 ? O PHE A 63 # _database_PDB_matrix.entry_id 1N27 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1N27 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-23 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 18 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 28 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.99 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.31 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 8 ? ? -169.58 109.22 2 1 LYS A 20 ? ? -64.50 93.46 3 1 HIS A 24 ? ? -64.96 92.33 4 1 ALA A 36 ? ? -97.90 -159.74 5 1 ASN A 42 ? ? 97.92 -26.56 6 1 LYS A 79 ? ? 61.98 143.35 7 1 SER A 95 ? ? 57.65 2.26 8 2 SER A 2 ? ? -140.95 -51.79 9 2 ASP A 30 ? ? -78.21 -164.08 10 2 GLU A 31 ? ? -125.74 -167.75 11 2 SER A 75 ? ? -58.04 99.03 12 3 SER A 2 ? ? 37.60 43.96 13 3 GLU A 8 ? ? 56.00 94.71 14 3 GLU A 34 ? ? -54.65 103.77 15 3 ALA A 36 ? ? -68.50 -168.79 16 3 ASN A 42 ? ? -153.79 21.35 17 3 HIS A 52 ? ? 58.72 11.91 18 3 GLU A 67 ? ? -72.86 -77.73 19 3 SER A 75 ? ? -57.52 107.45 20 4 SER A 2 ? ? -150.84 -52.49 21 4 SER A 3 ? ? -58.17 107.54 22 4 SER A 5 ? ? -169.85 114.57 23 4 HIS A 24 ? ? -60.25 96.93 24 4 ASN A 42 ? ? -160.33 9.83 25 4 PRO A 45 ? ? -67.26 95.31 26 4 PHE A 49 ? ? -47.58 150.25 27 4 HIS A 52 ? ? 53.11 16.53 28 4 GLU A 67 ? ? -70.39 -72.25 29 4 SER A 94 ? ? 80.97 126.97 30 5 SER A 5 ? ? -140.81 -51.50 31 5 SER A 6 ? ? 63.36 170.20 32 5 GLU A 8 ? ? -142.25 -149.05 33 5 HIS A 24 ? ? -55.19 107.16 34 5 GLU A 31 ? ? -126.68 -161.65 35 5 HIS A 52 ? ? 55.27 11.56 36 5 ASN A 76 ? ? -135.27 -96.99 37 5 LYS A 77 ? ? -160.36 -20.93 38 5 ASN A 90 ? ? -103.96 -71.34 39 6 TYR A 9 ? ? -48.34 155.86 40 6 ALA A 11 ? ? -58.30 103.25 41 6 HIS A 24 ? ? -59.57 103.31 42 6 ASN A 42 ? ? -174.92 0.97 43 6 HIS A 52 ? ? 58.12 14.59 44 7 SER A 2 ? ? -170.99 109.66 45 7 SER A 3 ? ? -76.59 48.40 46 7 SER A 5 ? ? 59.59 92.75 47 7 SER A 6 ? ? 59.22 166.57 48 7 ALA A 41 ? ? -43.74 91.96 49 7 ASN A 42 ? ? 33.64 58.19 50 7 SER A 75 ? ? -56.90 97.77 51 7 SER A 95 ? ? -155.01 -53.57 52 8 SER A 2 ? ? 57.19 157.91 53 8 SER A 3 ? ? 50.48 -154.81 54 8 SER A 6 ? ? -160.83 -87.40 55 8 GLU A 34 ? ? -69.97 21.87 56 8 PRO A 45 ? ? -68.45 91.63 57 8 SER A 75 ? ? -59.58 105.35 58 8 PRO A 93 ? ? -76.98 25.84 59 9 SER A 2 ? ? 62.50 164.16 60 9 SER A 3 ? ? -169.06 -53.00 61 9 GLU A 8 ? ? 74.14 88.07 62 9 HIS A 24 ? ? -64.02 97.04 63 9 ASN A 42 ? ? 83.55 1.19 64 9 ASN A 90 ? ? -81.69 43.17 65 9 SER A 95 ? ? -146.00 -21.26 66 10 SER A 2 ? ? -162.33 107.15 67 10 HIS A 24 ? ? -62.53 89.75 68 10 ASP A 30 ? ? -83.91 -156.42 69 10 SER A 94 ? ? 67.90 -41.53 70 11 GLU A 8 ? ? 68.25 165.65 71 11 HIS A 24 ? ? -63.07 97.61 72 11 VAL A 37 ? ? -68.27 -173.11 73 11 PRO A 45 ? ? -66.18 94.57 74 11 ASN A 76 ? ? -142.12 -6.01 75 11 LYS A 77 ? ? 121.64 -40.00 76 11 SER A 91 ? ? -68.92 74.60 77 11 SER A 94 ? ? 65.81 -25.83 78 11 SER A 95 ? ? 45.79 29.06 79 12 SER A 2 ? ? 63.87 -175.55 80 12 SER A 3 ? ? 57.59 -174.04 81 12 HIS A 24 ? ? -67.09 98.42 82 12 GLU A 31 ? ? -104.04 -169.71 83 12 PRO A 59 ? ? -66.81 5.71 84 12 SER A 94 ? ? -171.75 -78.06 85 13 SER A 5 ? ? 63.72 -70.93 86 13 HIS A 24 ? ? -62.59 88.09 87 13 GLU A 34 ? ? -69.75 24.13 88 13 VAL A 37 ? ? -35.19 131.16 89 13 HIS A 52 ? ? 58.09 3.15 90 13 GLU A 67 ? ? -74.02 -71.21 91 14 SER A 5 ? ? -169.34 -62.50 92 14 LYS A 71 ? ? -97.76 -62.48 93 14 SER A 95 ? ? -137.85 -79.30 94 15 SER A 3 ? ? -160.99 50.68 95 15 GLU A 31 ? ? -101.74 -163.91 96 15 GLU A 67 ? ? -92.90 -64.49 97 15 SER A 75 ? ? -54.40 103.54 98 15 ASN A 90 ? ? -96.04 39.18 99 16 SER A 2 ? ? 55.00 -91.79 100 16 SER A 6 ? ? -171.65 -174.57 101 16 GLU A 8 ? ? 10.19 98.02 102 16 HIS A 24 ? ? -67.18 92.66 103 16 SER A 75 ? ? -61.62 79.79 104 16 LYS A 77 ? ? -91.97 41.96 105 17 SER A 2 ? ? 50.08 82.22 106 17 SER A 5 ? ? -77.06 -83.20 107 17 ASN A 42 ? ? -175.08 6.42 108 18 SER A 2 ? ? -75.11 -161.75 109 18 GLU A 8 ? ? 109.48 141.32 110 18 LYS A 20 ? ? -80.74 44.28 111 18 PRO A 23 ? ? -68.57 -178.20 112 18 LYS A 38 ? ? -28.22 108.94 113 18 ASN A 42 ? ? 131.67 -4.48 114 18 HIS A 52 ? ? 55.56 18.01 115 18 ARG A 78 ? ? 44.50 -126.10 116 19 HIS A 24 ? ? -69.86 94.12 117 19 PRO A 33 ? ? -81.22 -152.94 118 19 GLU A 34 ? ? -66.78 -138.45 119 19 ALA A 36 ? ? -61.35 -179.83 120 19 ASN A 42 ? ? -173.82 -8.80 121 19 PHE A 49 ? ? -49.18 151.01 122 19 SER A 95 ? ? 53.25 -151.90 123 20 SER A 3 ? ? -135.45 -37.57 124 20 GLU A 8 ? ? 62.52 159.26 125 20 HIS A 24 ? ? -66.70 96.31 126 20 ALA A 36 ? ? -75.05 -167.50 127 20 ASN A 42 ? ? -163.47 7.52 128 20 ASN A 90 ? ? -76.03 -74.28 129 20 SER A 91 ? ? 48.36 73.20 130 20 SER A 95 ? ? 103.76 135.72 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 7 SER A 95 ? ? GLY A 96 ? ? 135.96 2 10 ASP A 30 ? ? GLU A 31 ? ? 147.44 3 15 LYS A 79 ? ? GLY A 80 ? ? -143.77 4 16 ASN A 76 ? ? LYS A 77 ? ? -149.48 5 19 GLY A 7 ? ? GLU A 8 ? ? 143.24 6 20 SER A 95 ? ? GLY A 96 ? ? -146.66 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 ARG A 78 ? ? 0.076 'SIDE CHAIN' 2 4 ARG A 28 ? ? 0.126 'SIDE CHAIN' 3 7 ARG A 28 ? ? 0.079 'SIDE CHAIN' 4 8 TYR A 9 ? ? 0.071 'SIDE CHAIN' 5 8 ARG A 78 ? ? 0.119 'SIDE CHAIN' 6 10 ARG A 78 ? ? 0.106 'SIDE CHAIN' 7 11 ARG A 78 ? ? 0.076 'SIDE CHAIN' 8 13 ARG A 28 ? ? 0.078 'SIDE CHAIN' 9 13 TYR A 44 ? ? 0.090 'SIDE CHAIN' 10 14 ARG A 78 ? ? 0.078 'SIDE CHAIN' 11 16 TYR A 68 ? ? 0.069 'SIDE CHAIN' 12 19 ARG A 28 ? ? 0.096 'SIDE CHAIN' 13 19 TYR A 68 ? ? 0.076 'SIDE CHAIN' #