HEADER HYDROLASE, LYASE/DNA 25-OCT-02 1N3A TITLE STRUCTURAL AND BIOCHEMICAL EXPLORATION OF A CRITICAL AMINO ACID IN TITLE 2 HUMAN 8-OXOGUANINE GLYCOSYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA COMPLEMENT STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA INHIBITOR STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: HOGG1 ENZYME, 8-OXOGUANOSINE DNA GLYCOSYLASE/DNA-(APURINIC COMPND 13 OR APYRIMIDINIC SITE) LYASE; COMPND 14 EC: 3.2.2.-, 4.2.99.18; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: OGG1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS HHH-GPD, GLYCOSYLASE, DNA-REPAIR, OXOGUANINE, HYDROLASE, LYASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.P.NORMAN,S.J.CHUNG,G.L.VERDINE REVDAT 4 14-FEB-24 1N3A 1 REMARK REVDAT 3 27-OCT-21 1N3A 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1N3A 1 VERSN REVDAT 1 04-MAR-03 1N3A 0 JRNL AUTH D.P.NORMAN,S.J.CHUNG,G.L.VERDINE JRNL TITL STRUCTURAL AND BIOCHEMICAL EXPLORATION OF A CRITICAL AMINO JRNL TITL 2 ACID IN HUMAN 8-OXOGUANINE GLYCOSYLASE JRNL REF BIOCHEMISTRY V. 42 1564 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12578369 JRNL DOI 10.1021/BI026823D REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 26543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1346 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3948 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 227 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2440 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.28000 REMARK 3 B22 (A**2) : 5.28000 REMARK 3 B33 (A**2) : -10.57000 REMARK 3 B12 (A**2) : 4.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.920 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 42.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1FN7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACODYLATE, CALCIUM ACETATE, 16-18% REMARK 280 PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.85133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.42567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.63850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.21283 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 176.06417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.85133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.42567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.21283 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.63850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 176.06417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 80 REMARK 465 ASP A 81 REMARK 465 LYS A 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 SER A 286 OG REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLN A 294 CG CD OE1 NE2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 32 O HOH A 450 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DC B 15 O3' DC B 15 11655 1.89 REMARK 500 O2 DC B 15 O2 DC B 15 11655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 102.17 -171.74 REMARK 500 PHE A 127 72.32 -116.84 REMARK 500 LEU A 170 -94.47 -100.06 REMARK 500 ASP A 174 -131.00 53.02 REMARK 500 GLU A 218 -23.64 -143.66 REMARK 500 TYR A 310 30.11 -99.40 REMARK 500 ARG A 324 42.85 -69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 22 OP2 REMARK 620 2 HOH C 32 O 100.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EBM RELATED DB: PDB REMARK 900 K249Q HOGG1 BOUND TO OXOG CONTAINING DNA REMARK 900 RELATED ID: 1FN7 RELATED DB: PDB REMARK 900 WILD-TYPE HOGG1 BOUND TO ABASIC THF INHIBITOR REMARK 900 RELATED ID: 1KO9 RELATED DB: PDB REMARK 900 UNBOUND HOGG1 REMARK 900 RELATED ID: 1N39 RELATED DB: PDB REMARK 900 D268E HOGG1 BOUND TO ABASIC THF INHIBITOR DBREF 1N3A A 12 325 UNP O15527 OGG1_HUMAN 12 325 DBREF 1N3A B 1 15 PDB 1N3A 1N3A 1 15 DBREF 1N3A C 16 30 PDB 1N3A 1N3A 16 30 SEQADV 1N3A GLY A 9 UNP O15527 CLONING ARTIFACT SEQADV 1N3A SER A 10 UNP O15527 CLONING ARTIFACT SEQADV 1N3A GLU A 11 UNP O15527 CLONING ARTIFACT SEQADV 1N3A GLN A 268 UNP O15527 ASP 268 ENGINEERED MUTATION SEQRES 1 B 15 DG DG DT DA DG DA DC DC DT DG DG DA DC SEQRES 2 B 15 DG DC SEQRES 1 C 15 DG DC DG DT DC DC DA 3DR DG DT DC DT DA SEQRES 2 C 15 DC DC SEQRES 1 A 317 GLY SER GLU GLY HIS ARG THR LEU ALA SER THR PRO ALA SEQRES 2 A 317 LEU TRP ALA SER ILE PRO CYS PRO ARG SER GLU LEU ARG SEQRES 3 A 317 LEU ASP LEU VAL LEU PRO SER GLY GLN SER PHE ARG TRP SEQRES 4 A 317 ARG GLU GLN SER PRO ALA HIS TRP SER GLY VAL LEU ALA SEQRES 5 A 317 ASP GLN VAL TRP THR LEU THR GLN THR GLU GLU GLN LEU SEQRES 6 A 317 HIS CYS THR VAL TYR ARG GLY ASP LYS SER GLN ALA SER SEQRES 7 A 317 ARG PRO THR PRO ASP GLU LEU GLU ALA VAL ARG LYS TYR SEQRES 8 A 317 PHE GLN LEU ASP VAL THR LEU ALA GLN LEU TYR HIS HIS SEQRES 9 A 317 TRP GLY SER VAL ASP SER HIS PHE GLN GLU VAL ALA GLN SEQRES 10 A 317 LYS PHE GLN GLY VAL ARG LEU LEU ARG GLN ASP PRO ILE SEQRES 11 A 317 GLU CYS LEU PHE SER PHE ILE CYS SER SER ASN ASN ASN SEQRES 12 A 317 ILE ALA ARG ILE THR GLY MET VAL GLU ARG LEU CYS GLN SEQRES 13 A 317 ALA PHE GLY PRO ARG LEU ILE GLN LEU ASP ASP VAL THR SEQRES 14 A 317 TYR HIS GLY PHE PRO SER LEU GLN ALA LEU ALA GLY PRO SEQRES 15 A 317 GLU VAL GLU ALA HIS LEU ARG LYS LEU GLY LEU GLY TYR SEQRES 16 A 317 ARG ALA ARG TYR VAL SER ALA SER ALA ARG ALA ILE LEU SEQRES 17 A 317 GLU GLU GLN GLY GLY LEU ALA TRP LEU GLN GLN LEU ARG SEQRES 18 A 317 GLU SER SER TYR GLU GLU ALA HIS LYS ALA LEU CYS ILE SEQRES 19 A 317 LEU PRO GLY VAL GLY THR LYS VAL ALA ASP CYS ILE CYS SEQRES 20 A 317 LEU MET ALA LEU ASP LYS PRO GLN ALA VAL PRO VAL GLN SEQRES 21 A 317 VAL HIS MET TRP HIS ILE ALA GLN ARG ASP TYR SER TRP SEQRES 22 A 317 HIS PRO THR THR SER GLN ALA LYS GLY PRO SER PRO GLN SEQRES 23 A 317 THR ASN LYS GLU LEU GLY ASN PHE PHE ARG SER LEU TRP SEQRES 24 A 317 GLY PRO TYR ALA GLY TRP ALA GLN ALA VAL LEU PHE SER SEQRES 25 A 317 ALA ASP LEU ARG GLN HET 3DR C 23 11 HET CA C 1 1 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM CA CALCIUM ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 2 3DR C5 H11 O6 P FORMUL 4 CA CA 2+ FORMUL 5 HOH *148(H2 O) HELIX 1 1 THR A 19 TRP A 23 5 5 HELIX 2 2 ARG A 34 LEU A 39 1 6 HELIX 3 3 THR A 89 PHE A 100 1 12 HELIX 4 4 THR A 105 ASP A 117 1 13 HELIX 5 5 ASP A 117 PHE A 127 1 11 HELIX 6 6 ASP A 136 CYS A 146 1 11 HELIX 7 7 ASN A 151 GLY A 167 1 17 HELIX 8 8 SER A 183 GLY A 189 1 7 HELIX 9 9 GLU A 191 LEU A 199 1 9 HELIX 10 10 TYR A 203 GLU A 218 1 16 HELIX 11 11 GLY A 221 LEU A 228 1 8 HELIX 12 12 ARG A 229 SER A 231 5 3 HELIX 13 13 SER A 232 CYS A 241 1 10 HELIX 14 14 GLY A 247 LEU A 259 1 13 HELIX 15 15 GLN A 268 SER A 280 1 13 HELIX 16 16 SER A 292 GLY A 308 1 17 HELIX 17 17 TYR A 310 ARG A 324 1 15 SHEET 1 A 5 ALA A 24 PRO A 27 0 SHEET 2 A 5 GLN A 72 TYR A 78 -1 O CYS A 75 N ALA A 24 SHEET 3 A 5 VAL A 63 GLN A 68 -1 N THR A 67 O HIS A 74 SHEET 4 A 5 HIS A 54 VAL A 58 -1 N TRP A 55 O LEU A 66 SHEET 5 A 5 ARG A 48 SER A 51 -1 N SER A 51 O HIS A 54 SHEET 1 B 2 ARG A 169 LEU A 173 0 SHEET 2 B 2 VAL A 176 HIS A 179 -1 O VAL A 176 N LEU A 173 LINK O3' DA C 22 P 3DR C 23 1555 1555 1.60 LINK O3' 3DR C 23 P DG C 24 1555 1555 1.60 LINK CA CA C 1 OP2 DA C 22 1555 1555 3.04 LINK CA CA C 1 O HOH C 32 1555 1555 2.47 SITE 1 AC1 2 DA C 22 HOH C 32 CRYST1 92.366 92.366 211.277 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010826 0.006251 0.000000 0.00000 SCALE2 0.000000 0.012501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004733 0.00000 TER 309 DC B 15 HETATM 449 O5' 3DR C 23 25.335 24.725 36.226 1.00 41.41 O HETATM 450 P 3DR C 23 26.578 24.018 36.927 1.00 40.74 P HETATM 451 OP1 3DR C 23 26.317 22.567 37.095 1.00 38.67 O HETATM 452 OP2 3DR C 23 27.794 24.457 36.203 1.00 44.11 O HETATM 453 C2' 3DR C 23 21.441 25.552 37.777 1.00 42.41 C HETATM 454 C5' 3DR C 23 24.026 24.170 36.299 1.00 40.35 C HETATM 455 C4' 3DR C 23 22.994 25.234 36.003 1.00 41.01 C HETATM 456 O4' 3DR C 23 21.742 24.614 35.637 1.00 43.25 O HETATM 457 C1' 3DR C 23 20.723 25.003 36.554 1.00 43.05 C HETATM 458 C3' 3DR C 23 22.671 26.185 37.157 1.00 42.00 C HETATM 459 O3' 3DR C 23 22.339 27.472 36.625 1.00 42.07 O TER 600 DC C 30 TER 3041 GLN A 325 HETATM 3042 CA CA C 1 24.909 32.319 40.152 1.00 55.48 CA HETATM 3043 O HOH B 23 20.310 31.377 55.759 1.00 65.38 O HETATM 3044 O HOH B 41 31.830 17.992 43.019 1.00 59.72 O HETATM 3045 O HOH B 115 28.242 26.261 53.544 1.00 49.46 O HETATM 3046 O HOH B 120 24.706 30.779 49.886 1.00 44.20 O HETATM 3047 O HOH B 135 35.633 16.034 41.321 1.00 70.81 O HETATM 3048 O HOH C 31 13.379 33.553 38.251 1.00 36.06 O HETATM 3049 O HOH C 32 23.616 30.254 40.535 1.00 52.85 O HETATM 3050 O HOH C 33 15.834 32.767 35.308 1.00 37.90 O HETATM 3051 O HOH C 34 42.044 28.508 58.573 1.00 72.72 O HETATM 3052 O HOH C 35 30.498 25.915 42.062 1.00 52.75 O HETATM 3053 O HOH C 36 20.558 24.232 33.142 1.00 37.09 O HETATM 3054 O HOH A 326 22.796 11.653 35.043 1.00 25.92 O HETATM 3055 O HOH A 327 14.727 30.697 30.339 1.00 31.35 O HETATM 3056 O HOH A 328 29.407 3.773 25.779 1.00 39.35 O HETATM 3057 O HOH A 329 31.311 37.245 18.812 1.00 28.45 O HETATM 3058 O HOH A 330 -2.760 27.121 34.808 1.00 59.31 O HETATM 3059 O HOH A 331 1.392 10.415 50.837 1.00 47.84 O HETATM 3060 O HOH A 332 16.110 24.465 14.654 1.00 32.86 O HETATM 3061 O HOH A 333 2.221 11.427 40.313 1.00 51.03 O HETATM 3062 O HOH A 334 0.994 21.551 20.471 1.00 57.42 O HETATM 3063 O HOH A 335 18.538 11.871 7.182 1.00 49.86 O HETATM 3064 O HOH A 336 16.563 -9.679 36.581 1.00 55.15 O HETATM 3065 O HOH A 337 29.946 28.312 22.508 1.00 27.29 O HETATM 3066 O HOH A 338 11.021 -5.372 43.995 1.00 70.10 O HETATM 3067 O HOH A 339 17.540 5.332 41.864 1.00 42.77 O HETATM 3068 O HOH A 340 22.658 18.776 49.250 1.00 35.68 O HETATM 3069 O HOH A 341 24.492 32.123 44.357 1.00 57.88 O HETATM 3070 O HOH A 342 5.058 22.446 53.102 1.00 65.58 O HETATM 3071 O HOH A 343 22.725 -8.876 38.255 1.00 35.20 O HETATM 3072 O HOH A 344 25.755 15.055 15.706 1.00 35.78 O HETATM 3073 O HOH A 345 24.155 16.103 47.064 1.00 29.72 O HETATM 3074 O HOH A 346 4.625 17.307 51.274 1.00 35.97 O HETATM 3075 O HOH A 347 12.595 16.769 25.476 1.00 45.34 O HETATM 3076 O HOH A 348 11.569 -0.414 30.744 1.00 47.87 O HETATM 3077 O HOH A 349 10.325 16.903 22.221 1.00 39.57 O HETATM 3078 O HOH A 350 11.990 19.048 22.868 1.00 43.09 O HETATM 3079 O HOH A 351 17.027 1.713 49.345 1.00 37.73 O HETATM 3080 O HOH A 352 21.793 5.950 38.208 1.00 28.77 O HETATM 3081 O HOH A 353 22.242 5.787 41.257 1.00 49.05 O HETATM 3082 O HOH A 354 31.912 -4.664 27.368 1.00 55.37 O HETATM 3083 O HOH A 355 18.177 6.232 37.699 1.00 37.36 O HETATM 3084 O HOH A 356 26.649 0.944 34.445 1.00 29.73 O HETATM 3085 O HOH A 357 28.048 -1.691 34.043 1.00 35.90 O HETATM 3086 O HOH A 358 16.936 -7.090 43.507 1.00 35.80 O HETATM 3087 O HOH A 359 15.920 12.091 6.239 1.00 50.53 O HETATM 3088 O HOH A 360 15.722 -9.822 34.330 1.00 45.00 O HETATM 3089 O HOH A 361 15.581 32.341 32.376 1.00 43.20 O HETATM 3090 O HOH A 362 13.351 30.369 26.225 1.00 42.17 O HETATM 3091 O HOH A 363 7.152 34.659 30.240 1.00 76.01 O HETATM 3092 O HOH A 364 11.442 32.110 28.325 1.00 52.73 O HETATM 3093 O HOH A 365 15.464 -4.169 46.326 1.00 34.60 O HETATM 3094 O HOH A 366 30.935 -0.436 24.766 1.00 46.97 O HETATM 3095 O HOH A 367 32.876 8.780 19.601 1.00 47.68 O HETATM 3096 O HOH A 368 -2.597 25.414 23.204 1.00 45.13 O HETATM 3097 O HOH A 369 29.749 -1.319 16.067 1.00 52.34 O HETATM 3098 O HOH A 370 27.722 46.455 23.467 1.00 48.88 O HETATM 3099 O HOH A 371 31.620 40.130 24.349 1.00 27.22 O HETATM 3100 O HOH A 372 9.490 32.622 26.558 1.00 59.22 O HETATM 3101 O HOH A 373 10.934 34.067 20.424 1.00 49.01 O HETATM 3102 O HOH A 374 16.881 29.740 11.518 1.00 55.41 O HETATM 3103 O HOH A 375 11.973 10.208 32.506 1.00 32.82 O HETATM 3104 O HOH A 376 11.809 6.968 32.287 1.00 51.45 O HETATM 3105 O HOH A 377 6.318 9.707 39.368 1.00 33.37 O HETATM 3106 O HOH A 378 9.747 8.768 26.816 1.00 48.78 O HETATM 3107 O HOH A 379 10.371 5.491 26.755 1.00 49.42 O HETATM 3108 O HOH A 380 34.388 32.453 20.787 1.00 38.25 O HETATM 3109 O HOH A 381 32.397 32.839 18.378 1.00 23.80 O HETATM 3110 O HOH A 382 38.832 34.857 20.404 1.00 51.62 O HETATM 3111 O HOH A 383 25.917 41.233 27.373 1.00 66.76 O HETATM 3112 O HOH A 384 9.377 24.152 17.621 1.00 37.76 O HETATM 3113 O HOH A 385 36.601 22.569 23.673 1.00 55.96 O HETATM 3114 O HOH A 386 17.927 -3.192 47.838 1.00 35.83 O HETATM 3115 O HOH A 387 23.818 11.270 47.859 1.00 41.18 O HETATM 3116 O HOH A 388 14.766 32.947 28.485 1.00 37.13 O HETATM 3117 O HOH A 389 34.631 5.988 34.988 1.00 46.03 O HETATM 3118 O HOH A 390 13.581 -10.886 33.438 1.00 47.24 O HETATM 3119 O HOH A 391 18.556 -7.771 29.162 1.00 36.96 O HETATM 3120 O HOH A 392 29.946 6.396 27.532 1.00 43.65 O HETATM 3121 O HOH A 393 10.683 11.355 17.769 1.00 43.06 O HETATM 3122 O HOH A 394 11.173 6.756 18.362 1.00 52.44 O HETATM 3123 O HOH A 395 9.502 16.509 25.844 1.00 45.34 O HETATM 3124 O HOH A 396 -4.177 17.617 25.790 1.00 48.30 O HETATM 3125 O HOH A 397 20.789 11.388 41.041 1.00 38.11 O HETATM 3126 O HOH A 398 32.964 25.655 23.510 1.00 48.53 O HETATM 3127 O HOH A 399 34.627 33.973 18.856 1.00 30.87 O HETATM 3128 O HOH A 400 36.159 35.572 19.642 1.00 46.35 O HETATM 3129 O HOH A 401 1.374 24.608 48.197 1.00 36.96 O HETATM 3130 O HOH A 402 26.449 22.884 8.097 1.00 50.53 O HETATM 3131 O HOH A 403 7.341 31.969 39.038 1.00 48.18 O HETATM 3132 O HOH A 404 -3.301 13.086 40.060 1.00 46.95 O HETATM 3133 O HOH A 405 11.745 9.081 18.188 1.00 44.91 O HETATM 3134 O HOH A 406 10.085 8.539 19.724 1.00 40.99 O HETATM 3135 O HOH A 407 20.764 -7.201 18.881 1.00 48.90 O HETATM 3136 O HOH A 408 13.388 27.246 53.528 1.00 58.51 O HETATM 3137 O HOH A 409 12.826 33.806 26.225 1.00 41.54 O HETATM 3138 O HOH A 410 15.063 27.150 11.080 1.00 52.02 O HETATM 3139 O HOH A 411 4.557 10.825 51.673 1.00 52.17 O HETATM 3140 O HOH A 412 5.340 11.334 54.139 1.00 47.33 O HETATM 3141 O HOH A 413 6.564 30.292 40.574 1.00 43.92 O HETATM 3142 O HOH A 414 23.698 -13.215 33.692 1.00 48.28 O HETATM 3143 O HOH A 415 10.756 5.597 34.548 1.00 57.69 O HETATM 3144 O HOH A 416 13.765 -2.926 37.187 1.00 35.92 O HETATM 3145 O HOH A 417 10.264 -4.825 35.883 1.00 53.07 O HETATM 3146 O HOH A 418 23.260 -10.539 34.775 1.00 40.38 O HETATM 3147 O HOH A 419 26.810 13.659 43.066 1.00 61.18 O HETATM 3148 O HOH A 420 29.362 -6.233 19.970 1.00 56.39 O HETATM 3149 O HOH A 421 22.603 -9.830 20.372 1.00 70.71 O HETATM 3150 O HOH A 422 18.426 -5.986 18.131 1.00 59.15 O HETATM 3151 O HOH A 423 18.547 8.690 14.984 1.00 45.85 O HETATM 3152 O HOH A 424 17.185 -9.428 32.251 1.00 41.14 O HETATM 3153 O HOH A 425 16.002 9.669 34.293 1.00 84.00 O HETATM 3154 O HOH A 426 5.353 6.683 40.855 1.00 55.90 O HETATM 3155 O HOH A 427 8.815 0.322 47.550 1.00 44.63 O HETATM 3156 O HOH A 428 26.348 12.788 46.315 1.00 68.05 O HETATM 3157 O HOH A 429 20.712 21.747 28.966 1.00 48.10 O HETATM 3158 O HOH A 430 15.862 16.059 28.300 1.00 26.21 O HETATM 3159 O HOH A 431 15.466 15.534 34.702 1.00 32.25 O HETATM 3160 O HOH A 432 22.474 8.693 41.867 1.00 43.93 O HETATM 3161 O HOH A 433 23.586 4.240 39.318 1.00 41.45 O HETATM 3162 O HOH A 434 14.920 11.443 32.874 1.00 41.02 O HETATM 3163 O HOH A 435 9.169 12.889 25.260 1.00 50.18 O HETATM 3164 O HOH A 436 21.658 14.322 31.380 1.00 21.43 O HETATM 3165 O HOH A 437 23.032 17.584 26.957 1.00 37.62 O HETATM 3166 O HOH A 438 20.514 18.910 20.339 1.00 34.81 O HETATM 3167 O HOH A 439 34.584 23.230 25.005 1.00 49.75 O HETATM 3168 O HOH A 440 17.634 25.570 37.387 1.00 48.80 O HETATM 3169 O HOH A 441 24.180 13.954 36.733 1.00 40.19 O HETATM 3170 O HOH A 442 23.276 15.525 34.475 1.00 32.34 O HETATM 3171 O HOH A 443 18.253 31.687 35.054 1.00 36.82 O HETATM 3172 O HOH A 444 13.744 25.921 42.266 1.00 41.22 O HETATM 3173 O HOH A 445 21.283 33.943 34.320 1.00 51.88 O HETATM 3174 O HOH A 446 13.651 42.883 34.347 1.00 43.29 O HETATM 3175 O HOH A 447 19.347 46.784 26.918 1.00 50.55 O HETATM 3176 O HOH A 448 18.978 40.162 20.902 1.00 34.24 O HETATM 3177 O HOH A 449 30.039 13.616 14.176 1.00 42.26 O HETATM 3178 O HOH A 450 21.855 12.151 12.695 1.00 37.59 O HETATM 3179 O HOH A 451 16.416 13.686 36.648 1.00 28.48 O HETATM 3180 O HOH A 452 7.921 10.176 37.008 1.00 38.92 O HETATM 3181 O HOH A 453 7.710 5.788 40.113 1.00 42.71 O HETATM 3182 O HOH A 454 6.542 13.061 24.753 1.00 38.24 O HETATM 3183 O HOH A 455 30.898 9.462 34.544 1.00 34.90 O HETATM 3184 O HOH A 456 30.762 11.929 33.493 1.00 38.73 O HETATM 3185 O HOH A 457 26.981 13.551 36.524 1.00 39.95 O HETATM 3186 O HOH A 458 26.916 10.537 41.182 1.00 40.81 O HETATM 3187 O HOH A 459 28.790 8.820 36.028 1.00 29.05 O HETATM 3188 O HOH A 460 33.119 3.859 35.143 1.00 40.44 O HETATM 3189 O HOH A 461 21.384 -8.614 43.712 1.00 48.79 O HETATM 3190 O HOH A 462 29.567 -0.024 40.500 1.00 39.76 O CONECT 430 3042 CONECT 436 450 CONECT 449 450 454 CONECT 450 436 449 451 452 CONECT 451 450 CONECT 452 450 CONECT 453 457 458 CONECT 454 449 455 CONECT 455 454 456 458 CONECT 456 455 457 CONECT 457 453 456 CONECT 458 453 455 459 CONECT 459 458 460 CONECT 460 459 CONECT 3042 430 3049 CONECT 3049 3042 MASTER 357 0 2 17 7 0 1 6 3187 3 16 29 END