HEADER TRANSLATION 28-OCT-02 1N3G TITLE SOLUTION STRUCTURE OF THE RIBOSOME-ASSOCIATED COLD SHOCK RESPONSE TITLE 2 PROTEIN YFIA OF ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YFIA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COLD-SHOCK PROTEIN YFIA, RIBOSOME ASSOCIATED INHIBITOR RAIA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS COLD SHOCK, TRANSLATION INHIBITOR, DSRBD, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR A.RAK,A.KALININ,D.SHCHERBAKOV,P.BAYER REVDAT 4 29-MAY-24 1N3G 1 REMARK REVDAT 3 23-FEB-22 1N3G 1 REMARK REVDAT 2 24-FEB-09 1N3G 1 VERSN REVDAT 1 28-JAN-03 1N3G 0 JRNL AUTH A.RAK,A.KALININ,D.SHCHERBAKOV,P.BAYER JRNL TITL SOLUTION STRUCTURE OF THE RIBOSOME-ASSOCIATED COLD SHOCK JRNL TITL 2 RESPONSE PROTEIN YFIA OF ESCHERICHIA COL JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 299 710 2002 JRNL REFN ISSN 0006-291X JRNL PMID 12470636 JRNL DOI 10.1016/S0006-291X(02)02721-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.E.AGAFONOV,V.A.KOLB,I.V.NAZIMOV,A.S.SPIRIN REMARK 1 TITL A PROTEIN RESIDING AT THE SUBUNIT INTERFACE OF THE BACTERIAL REMARK 1 TITL 2 RIBOSOME REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 12345 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.96.22.12345 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.KALININ,A.RAK,D.SHCHERBAKOV,P.BAYER REMARK 1 TITL 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF THE REMARK 1 TITL 2 RIBOSOME-ASSOCIATED COLD SHOCK RESPONSE PROTEIN YFIA OF REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF J.BIOMOL.NMR V. 23 335 2002 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1020279728394 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.2, CNS 1.0 REMARK 3 AUTHORS : BRUKER, RHEINSTETTEN, GERMANY (XWINNMR), AXEL REMARK 3 BRUENGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N3G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300; 300 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50MM LICL, 50MM KH2PO4; 50MM REMARK 210 LICL, 50MM KH2PO4; 50MM LICL, REMARK 210 50MM KH2PO4; 50MM LICL, 50MM REMARK 210 KH2PO4 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM YFIA, U-15N-13C; 50MM REMARK 210 PHOSPHATE BUFFER, 50MM LICL; REMARK 210 0.5MM YFIA, U-15N; 50MM REMARK 210 PHOSPHATE BUFFER, 50MM LICL; REMARK 210 0.5MM YFIA, U-15N; 50MM REMARK 210 PHOSPHATE BUFFER, 50MM LICL; REMARK 210 0.8MM YFIA; 50MM PHOSPHATE REMARK 210 BUFFER, 50MM LICL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNHA; 3D_15N-SEPARATED_NOESY; REMARK 210 3D_13C-SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE 2.03, VNMR 6.1B, AURELIA REMARK 210 2.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HYDROGEN BONDS WERE EXTRACTED FROM A SERIES OF 15N-HSQC REMARK 210 SPECTRA RECORDED IN D2O; ASSIGNMENT WAS DONE USING TRIPLE- REMARK 210 RESONANCE SPECTRA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 80.42 57.74 REMARK 500 1 LYS A 8 -89.06 -74.50 REMARK 500 1 GLU A 11 -179.30 -55.86 REMARK 500 1 THR A 32 -88.26 -144.23 REMARK 500 1 HIS A 33 -23.68 150.03 REMARK 500 1 LEU A 34 94.88 24.91 REMARK 500 1 ASN A 36 75.93 -110.92 REMARK 500 1 GLN A 46 45.73 -97.81 REMARK 500 1 HIS A 67 146.40 -174.65 REMARK 500 1 HIS A 90 109.10 -55.51 REMARK 500 1 LYS A 91 40.65 -154.83 REMARK 500 1 GLU A 93 75.05 -177.19 REMARK 500 1 ARG A 95 93.70 -61.81 REMARK 500 1 ALA A 97 166.82 63.09 REMARK 500 1 ALA A 98 -167.66 62.55 REMARK 500 1 SER A 100 34.97 -95.15 REMARK 500 1 ASP A 103 111.95 -161.90 REMARK 500 1 ASN A 105 76.59 -68.23 REMARK 500 1 PHE A 106 -100.83 -85.40 REMARK 500 1 VAL A 110 77.07 58.12 REMARK 500 1 GLU A 111 -71.27 -95.37 REMARK 500 1 GLU A 112 -70.66 -149.32 REMARK 500 2 MET A 3 56.87 38.80 REMARK 500 2 LYS A 8 -78.94 -73.83 REMARK 500 2 GLN A 9 -60.01 -102.77 REMARK 500 2 GLU A 11 -166.55 -57.88 REMARK 500 2 TRP A 30 38.49 -91.51 REMARK 500 2 GLN A 31 15.04 49.23 REMARK 500 2 LEU A 34 99.66 21.26 REMARK 500 2 ASN A 36 69.26 -106.86 REMARK 500 2 GLN A 46 49.20 -101.13 REMARK 500 2 HIS A 67 126.38 -177.17 REMARK 500 2 LYS A 87 -70.25 -64.07 REMARK 500 2 HIS A 90 69.57 -67.74 REMARK 500 2 LYS A 91 35.81 176.84 REMARK 500 2 ALA A 94 -54.25 -126.69 REMARK 500 2 ARG A 95 -64.71 70.03 REMARK 500 2 PHE A 106 -117.22 -63.15 REMARK 500 2 GLU A 108 -101.13 61.48 REMARK 500 2 GLU A 109 -163.54 -69.21 REMARK 500 2 VAL A 110 133.98 74.51 REMARK 500 2 GLU A 112 34.78 -173.85 REMARK 500 3 MET A 3 91.36 -55.40 REMARK 500 3 MET A 10 95.86 -163.90 REMARK 500 3 LEU A 34 138.72 62.64 REMARK 500 3 ILE A 35 -55.87 -132.05 REMARK 500 3 ASN A 36 66.87 -111.35 REMARK 500 3 GLN A 46 47.27 -101.84 REMARK 500 3 HIS A 67 146.27 -175.62 REMARK 500 3 HIS A 90 96.04 -57.37 REMARK 500 REMARK 500 THIS ENTRY HAS 501 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5389 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA FOR YFIA DBREF 1N3G A 1 113 UNP P0AD49 YFIA_ECOLI 0 112 SEQRES 1 A 113 MET THR MET ASN ILE THR SER LYS GLN MET GLU ILE THR SEQRES 2 A 113 PRO ALA ILE ARG GLN HIS VAL ALA ASP ARG LEU ALA LYS SEQRES 3 A 113 LEU GLU LYS TRP GLN THR HIS LEU ILE ASN PRO HIS ILE SEQRES 4 A 113 ILE LEU SER LYS GLU PRO GLN GLY PHE VAL ALA ASP ALA SEQRES 5 A 113 THR ILE ASN THR PRO ASN GLY VAL LEU VAL ALA SER GLY SEQRES 6 A 113 LYS HIS GLU ASP MET TYR THR ALA ILE ASN GLU LEU ILE SEQRES 7 A 113 ASN LYS LEU GLU ARG GLN LEU ASN LYS LEU GLN HIS LYS SEQRES 8 A 113 GLY GLU ALA ARG ARG ALA ALA THR SER VAL LYS ASP ALA SEQRES 9 A 113 ASN PHE VAL GLU GLU VAL GLU GLU GLU HELIX 1 1 THR A 13 GLU A 28 1 16 HELIX 2 2 ASP A 69 HIS A 90 1 22 HELIX 3 3 ALA A 97 LYS A 102 5 6 SHEET 1 A 4 ASN A 4 ILE A 5 0 SHEET 2 A 4 ASN A 36 GLU A 44 1 O ILE A 39 N ASN A 4 SHEET 3 A 4 GLY A 47 THR A 56 -1 O THR A 53 N HIS A 38 SHEET 4 A 4 GLY A 59 HIS A 67 -1 O HIS A 67 N PHE A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1