data_1N4E # _entry.id 1N4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1N4E pdb_00001n4e 10.2210/pdb1n4e/pdb NDB BD0059 ? ? RCSB RCSB017504 ? ? WWPDB D_1000017504 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-04 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1N4E _pdbx_database_status.recvd_initial_deposition_date 2002-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, H.' 1 'Zhang, K.' 2 'Ren, Y.' 3 'Nadji, S.' 4 'Sinha, N.' 5 'Taylor, J.-S.' 6 'Kang, C.' 7 # _citation.id primary _citation.title 'Crystal structure of a DNA decamer containing a cis-syn thymine dimer.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 99 _citation.page_first 15965 _citation.page_last 15970 _citation.year 2002 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12456887 _citation.pdbx_database_id_DOI 10.1073/pnas.242422699 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, H.' 1 ? primary 'Zhang, K.' 2 ? primary 'Ren, Y.' 3 ? primary 'Nadji, S.' 4 ? primary 'Sinha, N.' 5 ? primary 'Taylor, J.S.' 6 ? primary 'Kang, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3'" 3035.003 2 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'" 3053.031 2 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DT)(DA)(DA)(DT)(DT)(DC)(DG)' GCTTAATTCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG)(DC)' CGAATTAAGC B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 2 1 DC 1 11 11 DC C B . n B 2 2 DG 2 12 12 DG G B . n B 2 3 DA 3 13 13 DA A B . n B 2 4 DA 4 14 14 DA A B . n B 2 5 DT 5 15 15 DT T B . n B 2 6 DT 6 16 16 DT T B . n B 2 7 DA 7 17 17 DA A B . n B 2 8 DA 8 18 18 DA A B . n B 2 9 DG 9 19 19 DG G B . n B 2 10 DC 10 20 20 DC C B . n C 1 1 DG 1 101 101 DG G C . n C 1 2 DC 2 102 102 DC C C . n C 1 3 DT 3 103 103 DT T C . n C 1 4 DT 4 104 104 DT T C . n C 1 5 DA 5 105 105 DA A C . n C 1 6 DA 6 106 106 DA A C . n C 1 7 DT 7 107 107 DT T C . n C 1 8 DT 8 108 108 DT T C . n C 1 9 DC 9 109 109 DC C C . n C 1 10 DG 10 110 110 DG G C . n D 2 1 DC 1 111 111 DC C D . n D 2 2 DG 2 112 112 DG G D . n D 2 3 DA 3 113 113 DA A D . n D 2 4 DA 4 114 114 DA A D . n D 2 5 DT 5 115 115 DT T D . n D 2 6 DT 6 116 116 DT T D . n D 2 7 DA 7 117 117 DA A D . n D 2 8 DA 8 118 118 DA A D . n D 2 9 DG 9 119 119 DG G D . n D 2 10 DC 10 120 120 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 204 204 HOH HOH A . E 3 HOH 2 207 207 HOH HOH A . E 3 HOH 3 209 209 HOH HOH A . E 3 HOH 4 211 211 HOH HOH A . E 3 HOH 5 218 218 HOH HOH A . E 3 HOH 6 223 223 HOH HOH A . E 3 HOH 7 229 229 HOH HOH A . E 3 HOH 8 231 231 HOH HOH A . E 3 HOH 9 233 233 HOH HOH A . E 3 HOH 10 234 234 HOH HOH A . E 3 HOH 11 239 239 HOH HOH A . E 3 HOH 12 242 242 HOH HOH A . E 3 HOH 13 244 244 HOH HOH A . E 3 HOH 14 245 245 HOH HOH A . E 3 HOH 15 250 250 HOH HOH A . E 3 HOH 16 251 251 HOH HOH A . E 3 HOH 17 253 253 HOH HOH A . E 3 HOH 18 254 254 HOH HOH A . F 3 HOH 1 201 201 HOH HOH B . F 3 HOH 2 202 202 HOH HOH B . F 3 HOH 3 203 203 HOH HOH B . F 3 HOH 4 213 213 HOH HOH B . F 3 HOH 5 217 217 HOH HOH B . F 3 HOH 6 220 220 HOH HOH B . F 3 HOH 7 221 221 HOH HOH B . F 3 HOH 8 225 225 HOH HOH B . F 3 HOH 9 236 236 HOH HOH B . F 3 HOH 10 243 243 HOH HOH B . G 3 HOH 1 210 210 HOH HOH C . G 3 HOH 2 214 214 HOH HOH C . G 3 HOH 3 215 215 HOH HOH C . G 3 HOH 4 224 224 HOH HOH C . G 3 HOH 5 226 226 HOH HOH C . G 3 HOH 6 230 230 HOH HOH C . G 3 HOH 7 235 235 HOH HOH C . G 3 HOH 8 237 237 HOH HOH C . G 3 HOH 9 241 241 HOH HOH C . G 3 HOH 10 247 247 HOH HOH C . G 3 HOH 11 249 249 HOH HOH C . G 3 HOH 12 252 252 HOH HOH C . H 3 HOH 1 205 205 HOH HOH D . H 3 HOH 2 206 206 HOH HOH D . H 3 HOH 3 208 208 HOH HOH D . H 3 HOH 4 212 212 HOH HOH D . H 3 HOH 5 216 216 HOH HOH D . H 3 HOH 6 219 219 HOH HOH D . H 3 HOH 7 222 222 HOH HOH D . H 3 HOH 8 227 227 HOH HOH D . H 3 HOH 9 228 228 HOH HOH D . H 3 HOH 10 232 232 HOH HOH D . H 3 HOH 11 238 238 HOH HOH D . H 3 HOH 12 240 240 HOH HOH D . H 3 HOH 13 246 246 HOH HOH D . H 3 HOH 14 248 248 HOH HOH D . H 3 HOH 15 255 255 HOH HOH D . H 3 HOH 16 256 256 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 3.851 ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1N4E _cell.length_a 21.11 _cell.length_b 54.01 _cell.length_c 74.19 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1N4E _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1N4E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MgCl2, HEPES-Na, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 HEPES-Na ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1999-01-01 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1N4E _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 20 _reflns.number_all 5775 _reflns.number_obs 4616 _reflns.percent_possible_obs 88.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_all 76.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1N4E _refine.ls_d_res_high 2.5 _refine.ls_d_res_low 10 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 3220 _refine.ls_number_reflns_obs 3061 _refine.ls_number_reflns_R_free 159 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.255 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method random _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 864 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 10 # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.5 _refine_ls_shell.d_res_low 2.61 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1N4E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1N4E _struct.title 'Crystal Structure of a DNA Decamer Containing a Thymine-dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1N4E _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'UV-damaged DNA, Thymine dimer, DNA decamer, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1N4E 1N4E ? ? ? 2 2 PDB 1N4E 1N4E ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1N4E A 1 ? 10 ? 1N4E 1 ? 10 ? 1 10 2 2 1N4E B 1 ? 10 ? 1N4E 11 ? 20 ? 11 20 3 1 1N4E C 1 ? 10 ? 1N4E 101 ? 110 ? 101 110 4 2 1N4E D 1 ? 10 ? 1N4E 111 ? 120 ? 111 120 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B DT 5 C5 ? ? ? 1_555 B DT 6 C5 ? ? B DT 15 B DT 16 1_555 ? ? ? ? ? ? ? 1.510 ? ? covale2 covale none ? B DT 5 C6 ? ? ? 1_555 B DT 6 C6 ? ? B DT 15 B DT 16 1_555 ? ? ? ? ? ? ? 1.542 ? ? covale3 covale none ? D DT 5 C5 ? ? ? 1_555 D DT 6 C5 ? ? D DT 115 D DT 116 1_555 ? ? ? ? ? ? ? 1.520 ? ? covale4 covale none ? D DT 5 C6 ? ? ? 1_555 D DT 6 C6 ? ? D DT 115 D DT 116 1_555 ? ? ? ? ? ? ? 1.533 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 101 D DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 101 D DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 101 D DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 102 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 102 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 102 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 103 D DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 103 D DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 104 D DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 104 D DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 105 D DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 105 D DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 106 D DT 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 106 D DT 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 107 D DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 107 D DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 108 D DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 108 D DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 109 D DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 109 D DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 109 D DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 110 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 110 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 110 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? 1.457 1.521 -0.064 0.010 N 2 1 "O3'" A DG 1 ? ? "C3'" A DG 1 ? ? 1.352 1.419 -0.067 0.006 N 3 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.558 1.512 0.046 0.007 N 4 1 "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 1.394 1.518 -0.124 0.010 N 5 1 C6 A DT 3 ? ? N1 A DT 3 ? ? 1.305 1.378 -0.073 0.007 N 6 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.541 1.496 0.045 0.006 N 7 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.505 1.593 -0.088 0.010 N 8 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 1.449 1.516 -0.067 0.008 N 9 1 C4 A DA 5 ? ? C5 A DA 5 ? ? 1.333 1.383 -0.050 0.007 N 10 1 C5 A DA 5 ? ? C6 A DA 5 ? ? 1.351 1.406 -0.055 0.009 N 11 1 "O3'" A DA 5 ? ? P A DA 6 ? ? 1.506 1.607 -0.101 0.012 Y 12 1 C4 A DA 6 ? ? C5 A DA 6 ? ? 1.327 1.383 -0.056 0.007 N 13 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.317 1.373 -0.056 0.008 N 14 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.417 1.509 -0.092 0.011 N 15 1 "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.443 1.518 -0.075 0.010 N 16 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.429 1.521 -0.092 0.010 N 17 1 C5 A DT 8 ? ? C6 A DT 8 ? ? 1.388 1.339 0.049 0.007 N 18 1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.551 1.496 0.055 0.006 N 19 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 1.432 1.516 -0.084 0.008 N 20 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.304 1.375 -0.071 0.008 N 21 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 1.449 1.516 -0.067 0.008 N 22 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.385 1.446 -0.061 0.010 N 23 1 N1 B DC 11 ? ? C2 B DC 11 ? ? 1.298 1.397 -0.099 0.010 N 24 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.261 1.353 -0.092 0.008 N 25 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.334 1.425 -0.091 0.008 N 26 1 "O3'" B DC 11 ? ? P B DG 12 ? ? 1.495 1.607 -0.112 0.012 Y 27 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.506 1.593 -0.087 0.010 N 28 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.336 1.379 -0.043 0.007 N 29 1 C5 B DG 12 ? ? C6 B DG 12 ? ? 1.322 1.419 -0.097 0.010 N 30 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.315 1.375 -0.060 0.008 N 31 1 "O3'" B DG 12 ? ? P B DA 13 ? ? 1.521 1.607 -0.086 0.012 Y 32 1 "C3'" B DA 13 ? ? "C2'" B DA 13 ? ? 1.449 1.516 -0.067 0.008 N 33 1 "O3'" B DA 14 ? ? "C3'" B DA 14 ? ? 1.377 1.419 -0.042 0.006 N 34 1 C6 B DA 14 ? ? N1 B DA 14 ? ? 1.303 1.351 -0.048 0.007 N 35 1 C2 B DT 15 ? ? N3 B DT 15 ? ? 1.315 1.373 -0.058 0.008 N 36 1 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.613 1.496 0.117 0.006 N 37 1 C5 B DT 16 ? ? C6 B DT 16 ? ? 1.291 1.339 -0.048 0.007 N 38 1 C5 B DT 16 ? ? C7 B DT 16 ? ? 1.569 1.496 0.073 0.006 N 39 1 C5 B DA 17 ? ? C6 B DA 17 ? ? 1.334 1.406 -0.072 0.009 N 40 1 C6 B DA 17 ? ? N1 B DA 17 ? ? 1.291 1.351 -0.060 0.007 N 41 1 N9 B DA 17 ? ? C4 B DA 17 ? ? 1.329 1.374 -0.045 0.006 N 42 1 P B DA 18 ? ? "O5'" B DA 18 ? ? 1.530 1.593 -0.063 0.010 N 43 1 "O3'" B DA 18 ? ? "C3'" B DA 18 ? ? 1.376 1.419 -0.043 0.006 N 44 1 N1 B DA 18 ? ? C2 B DA 18 ? ? 1.283 1.339 -0.056 0.009 N 45 1 C4 B DA 18 ? ? C5 B DA 18 ? ? 1.337 1.383 -0.046 0.007 N 46 1 C5 B DA 18 ? ? C6 B DA 18 ? ? 1.342 1.406 -0.064 0.009 N 47 1 "O3'" B DG 19 ? ? "C3'" B DG 19 ? ? 1.368 1.419 -0.051 0.006 N 48 1 "O3'" B DG 19 ? ? P B DC 20 ? ? 1.532 1.607 -0.075 0.012 Y 49 1 "C4'" B DC 20 ? ? "C3'" B DC 20 ? ? 1.448 1.521 -0.073 0.010 N 50 1 "O4'" B DC 20 ? ? "C4'" B DC 20 ? ? 1.366 1.446 -0.080 0.010 N 51 1 "C4'" C DG 101 ? ? "C3'" C DG 101 ? ? 1.460 1.521 -0.061 0.010 N 52 1 "O3'" C DG 101 ? ? "C3'" C DG 101 ? ? 1.362 1.419 -0.057 0.006 N 53 1 "C4'" C DC 102 ? ? "C3'" C DC 102 ? ? 1.431 1.521 -0.090 0.010 N 54 1 "C3'" C DC 102 ? ? "C2'" C DC 102 ? ? 1.448 1.516 -0.068 0.008 N 55 1 "O3'" C DC 102 ? ? P C DT 103 ? ? 1.528 1.607 -0.079 0.012 Y 56 1 "C2'" C DT 103 ? ? "C1'" C DT 103 ? ? 1.452 1.518 -0.066 0.010 N 57 1 "O4'" C DT 103 ? ? "C4'" C DT 103 ? ? 1.383 1.446 -0.063 0.010 N 58 1 C5 C DT 103 ? ? C7 C DT 103 ? ? 1.538 1.496 0.042 0.006 N 59 1 "C5'" C DA 105 ? ? "C4'" C DA 105 ? ? 1.435 1.509 -0.074 0.011 N 60 1 N9 C DA 105 ? ? C4 C DA 105 ? ? 1.316 1.374 -0.058 0.006 N 61 1 C2 C DA 106 ? ? N3 C DA 106 ? ? 1.276 1.331 -0.055 0.009 N 62 1 C4 C DA 106 ? ? C5 C DA 106 ? ? 1.340 1.383 -0.043 0.007 N 63 1 C6 C DA 106 ? ? N1 C DA 106 ? ? 1.307 1.351 -0.044 0.007 N 64 1 C5 C DT 107 ? ? C7 C DT 107 ? ? 1.539 1.496 0.043 0.006 N 65 1 C6 C DT 108 ? ? N1 C DT 108 ? ? 1.326 1.378 -0.052 0.007 N 66 1 C5 C DT 108 ? ? C7 C DT 108 ? ? 1.533 1.496 0.037 0.006 N 67 1 "C5'" C DC 109 ? ? "C4'" C DC 109 ? ? 1.558 1.512 0.046 0.007 N 68 1 "O3'" C DC 109 ? ? "C3'" C DC 109 ? ? 1.374 1.419 -0.045 0.006 N 69 1 N3 C DC 109 ? ? C4 C DC 109 ? ? 1.286 1.335 -0.049 0.007 N 70 1 N1 D DC 111 ? ? C6 D DC 111 ? ? 1.324 1.367 -0.043 0.006 N 71 1 P D DG 112 ? ? "O5'" D DG 112 ? ? 1.458 1.593 -0.135 0.010 N 72 1 "C5'" D DG 112 ? ? "C4'" D DG 112 ? ? 1.438 1.509 -0.071 0.011 N 73 1 "C3'" D DG 112 ? ? "C2'" D DG 112 ? ? 1.430 1.516 -0.086 0.008 N 74 1 "C2'" D DG 112 ? ? "C1'" D DG 112 ? ? 1.435 1.518 -0.083 0.010 N 75 1 "O3'" D DG 112 ? ? "C3'" D DG 112 ? ? 1.377 1.419 -0.042 0.006 N 76 1 N3 D DG 112 ? ? C4 D DG 112 ? ? 1.305 1.350 -0.045 0.007 N 77 1 N9 D DG 112 ? ? C4 D DG 112 ? ? 1.298 1.375 -0.077 0.008 N 78 1 "O3'" D DG 112 ? ? P D DA 113 ? ? 1.510 1.607 -0.097 0.012 Y 79 1 P D DA 113 ? ? "O5'" D DA 113 ? ? 1.503 1.593 -0.090 0.010 N 80 1 "O3'" D DA 113 ? ? "C3'" D DA 113 ? ? 1.374 1.419 -0.045 0.006 N 81 1 N3 D DA 113 ? ? C4 D DA 113 ? ? 1.307 1.344 -0.037 0.006 N 82 1 "O3'" D DA 113 ? ? P D DA 114 ? ? 1.486 1.607 -0.121 0.012 Y 83 1 "C2'" D DA 114 ? ? "C1'" D DA 114 ? ? 1.446 1.518 -0.072 0.010 N 84 1 "O3'" D DA 114 ? ? "C3'" D DA 114 ? ? 1.327 1.419 -0.092 0.006 N 85 1 "C1'" D DA 114 ? ? N9 D DA 114 ? ? 1.378 1.468 -0.090 0.014 N 86 1 C5 D DA 114 ? ? C6 D DA 114 ? ? 1.342 1.406 -0.064 0.009 N 87 1 N9 D DA 114 ? ? C4 D DA 114 ? ? 1.320 1.374 -0.054 0.006 N 88 1 "O3'" D DA 114 ? ? P D DT 115 ? ? 1.529 1.607 -0.078 0.012 Y 89 1 C2 D DT 115 ? ? N3 D DT 115 ? ? 1.316 1.373 -0.057 0.008 N 90 1 C5 D DT 115 ? ? C7 D DT 115 ? ? 1.547 1.496 0.051 0.006 N 91 1 C5 D DT 116 ? ? C6 D DT 116 ? ? 1.296 1.339 -0.043 0.007 N 92 1 C5 D DT 116 ? ? C7 D DT 116 ? ? 1.569 1.496 0.073 0.006 N 93 1 N9 D DA 117 ? ? C4 D DA 117 ? ? 1.334 1.374 -0.040 0.006 N 94 1 "C4'" D DG 119 ? ? "C3'" D DG 119 ? ? 1.455 1.521 -0.066 0.010 N 95 1 "O4'" D DC 120 ? ? "C4'" D DC 120 ? ? 1.378 1.446 -0.068 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? "C2'" A DG 1 ? ? 99.99 105.90 -5.91 0.80 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 113.93 108.30 5.63 0.30 N 3 1 C8 A DG 1 ? ? N9 A DG 1 ? ? C4 A DG 1 ? ? 103.99 106.40 -2.41 0.40 N 4 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 98.82 104.50 -5.68 0.40 N 5 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 103.28 108.00 -4.72 0.70 N 6 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 103.88 109.40 -5.52 0.80 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.14 108.00 -4.86 0.70 N 8 1 "O3'" A DT 4 ? ? P A DA 5 ? ? "O5'" A DA 5 ? ? 83.44 104.00 -20.56 1.90 Y 9 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 101.50 109.40 -7.90 0.80 N 10 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 98.62 104.50 -5.88 0.40 N 11 1 "C1'" A DA 5 ? ? "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? 103.79 110.10 -6.31 1.00 N 12 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.19 108.30 4.89 0.30 N 13 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.20 118.60 4.60 0.60 N 14 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 117.37 123.70 -6.33 0.80 N 15 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 129.86 119.70 10.16 1.20 Y 16 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 114.46 108.30 6.16 0.30 N 17 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.50 129.30 -3.80 0.50 N 18 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 94.22 102.40 -8.18 0.80 N 19 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 98.69 104.50 -5.81 0.40 N 20 1 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? "O4'" A DT 8 ? ? 116.45 109.80 6.65 1.10 N 21 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 116.14 110.30 5.84 0.70 N 22 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 97.00 102.20 -5.20 0.70 N 23 1 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 112.28 102.50 9.78 1.20 N 24 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 93.28 105.90 -12.62 0.80 N 25 1 C6 A DT 8 ? ? N1 A DT 8 ? ? C2 A DT 8 ? ? 117.84 121.30 -3.46 0.50 N 26 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 120.16 114.60 5.56 0.60 N 27 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 123.26 118.00 5.26 0.60 N 28 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 114.50 122.30 -7.80 0.60 N 29 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 112.10 119.00 -6.90 0.60 N 30 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 128.19 119.70 8.49 1.20 Y 31 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 101.73 108.00 -6.27 0.70 N 32 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 110.25 106.00 4.25 0.60 N 33 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 100.51 110.10 -9.59 1.00 N 34 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 113.84 106.80 7.04 0.50 N 35 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 107.27 111.90 -4.63 0.50 N 36 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 100.85 104.30 -3.45 0.50 N 37 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.69 119.90 3.79 0.60 N 38 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 96.04 104.50 -8.46 0.40 N 39 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 92.95 102.40 -9.45 0.80 N 40 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 100.99 108.00 -7.01 0.70 N 41 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 124.94 120.30 4.64 0.40 N 42 1 N1 B DC 11 ? ? C2 B DC 11 ? ? N3 B DC 11 ? ? 112.69 119.20 -6.51 0.70 N 43 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 124.22 119.90 4.32 0.50 N 44 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 124.93 121.90 3.03 0.40 N 45 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 111.25 117.40 -6.15 0.50 N 46 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.59 118.90 3.69 0.60 N 47 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.22 118.00 4.22 0.70 N 48 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 112.23 120.20 -7.97 0.70 N 49 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 132.64 119.70 12.94 1.20 Y 50 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 109.71 106.00 3.71 0.60 N 51 1 "C1'" B DG 12 ? ? "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 100.10 110.10 -10.00 1.00 N 52 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 93.97 102.40 -8.43 0.80 N 53 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 113.58 106.80 6.78 0.50 N 54 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 132.22 128.60 3.62 0.50 N 55 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.80 128.60 -3.80 0.60 N 56 1 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 136.75 127.00 9.75 1.30 N 57 1 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 115.34 126.50 -11.16 1.30 N 58 1 "O3'" B DG 12 ? ? P B DA 13 ? ? "O5'" B DA 13 ? ? 88.12 104.00 -15.88 1.90 Y 59 1 "O5'" B DA 13 ? ? "C5'" B DA 13 ? ? "C4'" B DA 13 ? ? 102.27 109.40 -7.13 0.80 N 60 1 "C3'" B DA 13 ? ? "C2'" B DA 13 ? ? "C1'" B DA 13 ? ? 110.85 102.50 8.35 1.20 N 61 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 112.05 108.30 3.75 0.30 N 62 1 "C3'" B DA 13 ? ? "O3'" B DA 13 ? ? P B DA 14 ? ? 131.22 119.70 11.52 1.20 Y 63 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 117.81 108.30 9.51 0.30 N 64 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 99.49 108.00 -8.51 0.70 N 65 1 C5 B DT 15 ? ? C6 B DT 15 ? ? N1 B DT 15 ? ? 117.42 123.70 -6.28 0.60 N 66 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 103.97 119.00 -15.03 0.60 N 67 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 112.83 122.90 -10.07 0.60 N 68 1 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 97.72 110.10 -12.38 1.00 N 69 1 "C3'" B DT 16 ? ? "C2'" B DT 16 ? ? "C1'" B DT 16 ? ? 97.10 102.40 -5.30 0.80 N 70 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 121.65 108.30 13.35 0.30 N 71 1 N3 B DT 16 ? ? C4 B DT 16 ? ? O4 B DT 16 ? ? 115.43 119.90 -4.47 0.60 N 72 1 C5 B DT 16 ? ? C4 B DT 16 ? ? O4 B DT 16 ? ? 129.10 124.90 4.20 0.70 N 73 1 C4 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 108.83 119.00 -10.17 0.60 N 74 1 C6 B DT 16 ? ? N1 B DT 16 ? ? "C1'" B DT 16 ? ? 129.45 120.40 9.05 1.50 N 75 1 "C3'" B DT 16 ? ? "O3'" B DT 16 ? ? P B DA 17 ? ? 107.66 119.70 -12.04 1.20 Y 76 1 "O3'" B DT 16 ? ? P B DA 17 ? ? "O5'" B DA 17 ? ? 87.68 104.00 -16.32 1.90 Y 77 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 100.20 104.50 -4.30 0.40 N 78 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 105.71 110.60 -4.89 0.50 N 79 1 "O3'" B DA 17 ? ? P B DA 18 ? ? "O5'" B DA 18 ? ? 89.47 104.00 -14.53 1.90 Y 80 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.92 108.30 2.62 0.30 N 81 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DG 19 ? ? 109.23 119.70 -10.47 1.20 Y 82 1 "O4'" B DG 19 ? ? "C4'" B DG 19 ? ? "C3'" B DG 19 ? ? 101.61 104.50 -2.89 0.40 N 83 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 88.12 105.90 -17.78 0.80 N 84 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 112.86 108.30 4.56 0.30 N 85 1 C4 B DG 19 ? ? C5 B DG 19 ? ? N7 B DG 19 ? ? 113.48 110.80 2.68 0.40 N 86 1 C5 B DG 19 ? ? N7 B DG 19 ? ? C8 B DG 19 ? ? 100.49 104.30 -3.81 0.50 N 87 1 N7 B DG 19 ? ? C8 B DG 19 ? ? N9 B DG 19 ? ? 116.42 113.10 3.32 0.50 N 88 1 C8 B DG 19 ? ? N9 B DG 19 ? ? C4 B DG 19 ? ? 103.57 106.40 -2.83 0.40 N 89 1 "O3'" B DG 19 ? ? P B DC 20 ? ? "O5'" B DC 20 ? ? 90.64 104.00 -13.36 1.90 Y 90 1 "O4'" B DC 20 ? ? "C4'" B DC 20 ? ? "C3'" B DC 20 ? ? 97.65 104.50 -6.85 0.40 N 91 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? "C2'" B DC 20 ? ? 98.04 105.90 -7.86 0.80 N 92 1 "O4'" C DG 101 ? ? "C1'" C DG 101 ? ? N9 C DG 101 ? ? 110.42 108.30 2.12 0.30 N 93 1 "C3'" C DG 101 ? ? "O3'" C DG 101 ? ? P C DC 102 ? ? 127.15 119.70 7.45 1.20 Y 94 1 "C5'" C DC 102 ? ? "C4'" C DC 102 ? ? "C3'" C DC 102 ? ? 101.06 114.10 -13.04 1.80 N 95 1 "C5'" C DC 102 ? ? "C4'" C DC 102 ? ? "O4'" C DC 102 ? ? 117.08 109.80 7.28 1.10 N 96 1 "O4'" C DC 102 ? ? "C1'" C DC 102 ? ? "C2'" C DC 102 ? ? 99.92 105.90 -5.98 0.80 N 97 1 "O4'" C DC 102 ? ? "C1'" C DC 102 ? ? N1 C DC 102 ? ? 112.31 108.30 4.01 0.30 N 98 1 C2 C DC 102 ? ? N3 C DC 102 ? ? C4 C DC 102 ? ? 124.31 119.90 4.41 0.50 N 99 1 N3 C DC 102 ? ? C4 C DC 102 ? ? C5 C DC 102 ? ? 118.33 121.90 -3.57 0.40 N 100 1 C5 C DC 102 ? ? C6 C DC 102 ? ? N1 C DC 102 ? ? 124.31 121.00 3.31 0.50 N 101 1 N3 C DC 102 ? ? C4 C DC 102 ? ? N4 C DC 102 ? ? 123.36 118.00 5.36 0.70 N 102 1 "O3'" C DC 102 ? ? P C DT 103 ? ? "O5'" C DT 103 ? ? 89.90 104.00 -14.10 1.90 Y 103 1 "O4'" C DT 103 ? ? "C1'" C DT 103 ? ? N1 C DT 103 ? ? 113.75 108.30 5.45 0.30 N 104 1 C4 C DT 103 ? ? C5 C DT 103 ? ? C7 C DT 103 ? ? 123.99 119.00 4.99 0.60 N 105 1 C6 C DT 103 ? ? C5 C DT 103 ? ? C7 C DT 103 ? ? 116.32 122.90 -6.58 0.60 N 106 1 "O4'" C DT 104 ? ? "C4'" C DT 104 ? ? "C3'" C DT 104 ? ? 101.20 104.50 -3.30 0.40 N 107 1 "C3'" C DT 104 ? ? "C2'" C DT 104 ? ? "C1'" C DT 104 ? ? 92.97 102.40 -9.43 0.80 N 108 1 "C3'" C DA 105 ? ? "C2'" C DA 105 ? ? "C1'" C DA 105 ? ? 96.56 102.40 -5.84 0.80 N 109 1 "O4'" C DA 105 ? ? "C1'" C DA 105 ? ? "C2'" C DA 105 ? ? 110.76 106.80 3.96 0.50 N 110 1 N1 C DA 105 ? ? C6 C DA 105 ? ? N6 C DA 105 ? ? 122.21 118.60 3.61 0.60 N 111 1 C5 C DA 105 ? ? C6 C DA 105 ? ? N6 C DA 105 ? ? 117.55 123.70 -6.15 0.80 N 112 1 "O5'" C DA 106 ? ? "C5'" C DA 106 ? ? "C4'" C DA 106 ? ? 101.38 109.40 -8.02 0.80 N 113 1 C6 C DA 106 ? ? N1 C DA 106 ? ? C2 C DA 106 ? ? 122.41 118.60 3.81 0.60 N 114 1 C5 C DA 106 ? ? C6 C DA 106 ? ? N1 C DA 106 ? ? 114.65 117.70 -3.05 0.50 N 115 1 "C3'" C DA 106 ? ? "O3'" C DA 106 ? ? P C DT 107 ? ? 134.27 119.70 14.57 1.20 Y 116 1 "O4'" C DT 107 ? ? "C1'" C DT 107 ? ? N1 C DT 107 ? ? 113.88 108.30 5.58 0.30 N 117 1 C6 C DT 107 ? ? N1 C DT 107 ? ? C2 C DT 107 ? ? 116.81 121.30 -4.49 0.50 N 118 1 N1 C DT 107 ? ? C2 C DT 107 ? ? N3 C DT 107 ? ? 119.22 114.60 4.62 0.60 N 119 1 C4 C DT 107 ? ? C5 C DT 107 ? ? C6 C DT 107 ? ? 122.09 118.00 4.09 0.60 N 120 1 C4 C DT 107 ? ? C5 C DT 107 ? ? C7 C DT 107 ? ? 114.96 119.00 -4.04 0.60 N 121 1 "O4'" C DT 108 ? ? "C1'" C DT 108 ? ? "C2'" C DT 108 ? ? 98.72 105.90 -7.18 0.80 N 122 1 "O4'" C DT 108 ? ? "C1'" C DT 108 ? ? N1 C DT 108 ? ? 111.36 108.30 3.06 0.30 N 123 1 C4 C DT 108 ? ? C5 C DT 108 ? ? C6 C DT 108 ? ? 121.63 118.00 3.63 0.60 N 124 1 "O4'" C DC 109 ? ? "C1'" C DC 109 ? ? "C2'" C DC 109 ? ? 100.11 105.90 -5.79 0.80 N 125 1 "O4'" C DG 110 ? ? "C4'" C DG 110 ? ? "C3'" C DG 110 ? ? 110.66 106.00 4.66 0.60 N 126 1 "C4'" C DG 110 ? ? "C3'" C DG 110 ? ? "C2'" C DG 110 ? ? 96.64 102.20 -5.56 0.70 N 127 1 "C3'" C DG 110 ? ? "C2'" C DG 110 ? ? "C1'" C DG 110 ? ? 111.08 102.50 8.58 1.20 N 128 1 "O4'" C DG 110 ? ? "C1'" C DG 110 ? ? "C2'" C DG 110 ? ? 100.68 105.90 -5.22 0.80 N 129 1 "O4'" C DG 110 ? ? "C1'" C DG 110 ? ? N9 C DG 110 ? ? 110.58 108.30 2.28 0.30 N 130 1 N7 C DG 110 ? ? C8 C DG 110 ? ? N9 C DG 110 ? ? 116.44 113.10 3.34 0.50 N 131 1 C8 C DG 110 ? ? N9 C DG 110 ? ? C4 C DG 110 ? ? 103.91 106.40 -2.49 0.40 N 132 1 N3 C DG 110 ? ? C2 C DG 110 ? ? N2 C DG 110 ? ? 114.97 119.90 -4.93 0.70 N 133 1 N1 C DG 110 ? ? C6 C DG 110 ? ? O6 C DG 110 ? ? 124.00 119.90 4.10 0.60 N 134 1 "C1'" D DC 111 ? ? "O4'" D DC 111 ? ? "C4'" D DC 111 ? ? 101.14 110.10 -8.96 1.00 N 135 1 "O4'" D DC 111 ? ? "C1'" D DC 111 ? ? "C2'" D DC 111 ? ? 97.23 105.90 -8.67 0.80 N 136 1 "O4'" D DC 111 ? ? "C1'" D DC 111 ? ? N1 D DC 111 ? ? 112.44 108.30 4.14 0.30 N 137 1 N1 D DC 111 ? ? C2 D DC 111 ? ? O2 D DC 111 ? ? 122.99 118.90 4.09 0.60 N 138 1 N3 D DC 111 ? ? C2 D DC 111 ? ? O2 D DC 111 ? ? 117.59 121.90 -4.31 0.70 N 139 1 "O5'" D DG 112 ? ? "C5'" D DG 112 ? ? "C4'" D DG 112 ? ? 98.74 109.40 -10.66 0.80 N 140 1 "O4'" D DG 112 ? ? "C1'" D DG 112 ? ? "C2'" D DG 112 ? ? 111.40 106.80 4.60 0.50 N 141 1 "O4'" D DG 112 ? ? "C1'" D DG 112 ? ? N9 D DG 112 ? ? 113.51 108.30 5.21 0.30 N 142 1 C5 D DG 112 ? ? N7 D DG 112 ? ? C8 D DG 112 ? ? 100.15 104.30 -4.15 0.50 N 143 1 "C3'" D DG 112 ? ? "O3'" D DG 112 ? ? P D DA 113 ? ? 127.02 119.70 7.32 1.20 Y 144 1 "O3'" D DG 112 ? ? P D DA 113 ? ? "O5'" D DA 113 ? ? 92.51 104.00 -11.49 1.90 Y 145 1 "O4'" D DA 113 ? ? "C1'" D DA 113 ? ? "C2'" D DA 113 ? ? 100.55 105.90 -5.35 0.80 N 146 1 "O4'" D DA 113 ? ? "C1'" D DA 113 ? ? N9 D DA 113 ? ? 111.79 108.30 3.49 0.30 N 147 1 C8 D DA 113 ? ? N9 D DA 113 ? ? C4 D DA 113 ? ? 103.14 105.80 -2.66 0.40 N 148 1 "C4'" D DA 114 ? ? "C3'" D DA 114 ? ? "C2'" D DA 114 ? ? 110.26 103.10 7.16 0.90 N 149 1 "C3'" D DA 114 ? ? "C2'" D DA 114 ? ? "C1'" D DA 114 ? ? 97.18 102.40 -5.22 0.80 N 150 1 C8 D DA 114 ? ? N9 D DA 114 ? ? C4 D DA 114 ? ? 108.40 105.80 2.60 0.40 N 151 1 "C1'" D DT 115 ? ? "O4'" D DT 115 ? ? "C4'" D DT 115 ? ? 102.94 110.10 -7.16 1.00 N 152 1 "O4'" D DT 115 ? ? "C1'" D DT 115 ? ? "C2'" D DT 115 ? ? 100.01 105.90 -5.89 0.80 N 153 1 "O4'" D DT 115 ? ? "C1'" D DT 115 ? ? N1 D DT 115 ? ? 95.79 108.00 -12.21 0.70 N 154 1 C5 D DT 115 ? ? C6 D DT 115 ? ? N1 D DT 115 ? ? 118.76 123.70 -4.94 0.60 N 155 1 C4 D DT 115 ? ? C5 D DT 115 ? ? C7 D DT 115 ? ? 102.36 119.00 -16.64 0.60 N 156 1 C6 D DT 115 ? ? C5 D DT 115 ? ? C7 D DT 115 ? ? 115.28 122.90 -7.62 0.60 N 157 1 "C1'" D DT 116 ? ? "O4'" D DT 116 ? ? "C4'" D DT 116 ? ? 98.12 110.10 -11.98 1.00 N 158 1 "C3'" D DT 116 ? ? "C2'" D DT 116 ? ? "C1'" D DT 116 ? ? 97.21 102.40 -5.19 0.80 N 159 1 "O4'" D DT 116 ? ? "C1'" D DT 116 ? ? N1 D DT 116 ? ? 118.08 108.30 9.78 0.30 N 160 1 N1 D DT 116 ? ? C2 D DT 116 ? ? N3 D DT 116 ? ? 118.49 114.60 3.89 0.60 N 161 1 N3 D DT 116 ? ? C4 D DT 116 ? ? O4 D DT 116 ? ? 116.12 119.90 -3.78 0.60 N 162 1 C4 D DT 116 ? ? C5 D DT 116 ? ? C7 D DT 116 ? ? 108.82 119.00 -10.18 0.60 N 163 1 C6 D DT 116 ? ? N1 D DT 116 ? ? "C1'" D DT 116 ? ? 131.10 120.40 10.70 1.50 N 164 1 C2 D DT 116 ? ? N1 D DT 116 ? ? "C1'" D DT 116 ? ? 108.57 118.20 -9.63 1.60 N 165 1 "C3'" D DT 116 ? ? "O3'" D DT 116 ? ? P D DA 117 ? ? 107.40 119.70 -12.30 1.20 Y 166 1 "O4'" D DA 117 ? ? "C1'" D DA 117 ? ? N9 D DA 117 ? ? 114.13 108.30 5.83 0.30 N 167 1 N1 D DA 117 ? ? C6 D DA 117 ? ? N6 D DA 117 ? ? 123.20 118.60 4.60 0.60 N 168 1 "O4'" D DA 118 ? ? "C4'" D DA 118 ? ? "C3'" D DA 118 ? ? 100.75 104.50 -3.75 0.40 N 169 1 "C3'" D DA 118 ? ? "C2'" D DA 118 ? ? "C1'" D DA 118 ? ? 97.54 102.40 -4.86 0.80 N 170 1 P D DG 119 ? ? "O5'" D DG 119 ? ? "C5'" D DG 119 ? ? 109.81 120.90 -11.09 1.60 N 171 1 "O4'" D DG 119 ? ? "C1'" D DG 119 ? ? N9 D DG 119 ? ? 116.26 108.30 7.96 0.30 N 172 1 C8 D DG 119 ? ? N9 D DG 119 ? ? C4 D DG 119 ? ? 103.78 106.40 -2.62 0.40 N 173 1 "O4'" D DC 120 ? ? "C4'" D DC 120 ? ? "C3'" D DC 120 ? ? 95.28 104.50 -9.22 0.40 N 174 1 "O4'" D DC 120 ? ? "C1'" D DC 120 ? ? "C2'" D DC 120 ? ? 100.87 105.90 -5.03 0.80 N 175 1 "O4'" D DC 120 ? ? "C1'" D DC 120 ? ? N1 D DC 120 ? ? 103.08 108.00 -4.92 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 2 ? ? 0.070 'SIDE CHAIN' 2 1 DG A 10 ? ? 0.055 'SIDE CHAIN' 3 1 DC B 11 ? ? 0.069 'SIDE CHAIN' 4 1 DA C 105 ? ? 0.062 'SIDE CHAIN' 5 1 DG D 112 ? ? 0.077 'SIDE CHAIN' 6 1 DG D 119 ? ? 0.054 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1N4E 'double helix' 1N4E 'b-form double helix' 1N4E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -1.139 -0.581 0.021 1.984 -3.475 1.626 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.683 -0.824 0.353 -9.402 -14.836 -6.049 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 0.100 -0.523 0.016 -3.567 -10.730 -6.228 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 -0.261 -0.593 -0.421 15.321 -10.064 1.069 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 0.015 -0.601 0.398 17.630 -0.194 -8.976 5 A_DA5:DT16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.057 -0.144 -1.428 -29.687 -25.899 -7.025 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DT 7 1_555 B DA 4 1_555 0.255 -0.431 -0.098 4.083 -20.879 -2.911 7 A_DT7:DA14_B A 7 ? B 14 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 1.299 -0.998 -0.568 18.005 -21.441 -1.618 8 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.405 -0.694 0.527 10.996 -3.259 -8.321 9 A_DG10:DC11_B A 10 ? B 11 ? 19 1 1 C DG 1 1_555 D DC 10 1_555 -0.078 -0.353 -0.106 2.914 -4.817 -6.699 10 C_DG101:DC120_D C 101 ? D 120 ? 19 1 1 C DC 2 1_555 D DG 9 1_555 -0.070 -0.102 0.578 -6.300 -7.266 7.169 11 C_DC102:DG119_D C 102 ? D 119 ? 19 1 1 C DT 3 1_555 D DA 8 1_555 0.456 -0.166 -0.020 -2.665 -10.889 -2.240 12 C_DT103:DA118_D C 103 ? D 118 ? 20 1 1 C DT 4 1_555 D DA 7 1_555 0.376 -0.543 0.400 2.106 -11.672 0.596 13 C_DT104:DA117_D C 104 ? D 117 ? 20 1 1 C DA 5 1_555 D DT 6 1_555 -0.121 -0.646 0.616 16.112 0.873 -4.441 14 C_DA105:DT116_D C 105 ? D 116 ? 20 1 1 C DA 6 1_555 D DT 5 1_555 0.726 -0.660 -1.390 -34.254 -23.950 7.517 15 C_DA106:DT115_D C 106 ? D 115 ? 20 1 1 C DT 7 1_555 D DA 4 1_555 0.705 -0.619 0.521 -7.368 -22.984 3.407 16 C_DT107:DA114_D C 107 ? D 114 ? 20 1 1 C DT 8 1_555 D DA 3 1_555 0.457 -0.480 0.008 0.011 -17.335 -7.780 17 C_DT108:DA113_D C 108 ? D 113 ? 20 1 1 C DC 9 1_555 D DG 2 1_555 0.825 -0.409 -0.239 11.423 -21.043 3.304 18 C_DC109:DG112_D C 109 ? D 112 ? 19 1 1 C DG 10 1_555 D DC 1 1_555 0.970 -0.395 -0.010 7.408 5.889 -8.513 19 C_DG110:DC111_D C 110 ? D 111 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.904 -0.072 3.546 -1.433 -4.027 47.044 0.268 1.002 3.565 -5.033 1.791 47.227 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.454 -0.023 3.046 2.970 7.018 30.574 -1.255 1.349 2.913 13.056 -5.525 31.487 2 AA_DC2DT3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DT 4 1_555 B DA 7 1_555 0.394 0.246 2.739 1.139 -3.595 30.535 1.051 -0.556 2.706 -6.794 -2.152 30.761 3 AA_DT3DT4:DA17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B DT 6 1_555 1.371 0.346 3.063 -3.385 3.467 39.969 0.140 -2.346 2.961 5.049 4.931 40.249 4 AA_DT4DA5:DT16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B DT 6 1_555 A DA 6 1_555 B DT 5 1_555 -1.343 -0.065 4.314 18.278 26.452 23.471 -3.887 4.601 1.935 45.073 -31.144 39.625 5 AA_DA5DA6:DT15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 0.505 -0.221 2.513 -15.488 1.813 24.588 -0.729 -3.478 1.855 3.808 32.521 29.051 6 AA_DA6DT7:DA14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DT 7 1_555 B DA 4 1_555 A DC 9 1_555 B DG 2 1_555 -0.267 0.751 6.287 10.976 6.282 84.480 0.277 0.683 6.258 4.649 -8.124 85.245 7 AA_DT7DC9:DG12DA14_BB A 7 ? B 14 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.329 0.493 3.502 -8.319 4.681 27.980 -0.127 -1.298 3.489 9.344 16.605 29.532 8 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 C DG 1 1_555 D DC 10 1_555 C DC 2 1_555 D DG 9 1_555 0.508 -0.558 3.315 -3.908 -1.851 30.310 -0.688 -1.741 3.253 -3.517 7.426 30.610 9 CC_DG101DC102:DG119DC120_DD C 101 ? D 120 ? C 102 ? D 119 ? 1 C DC 2 1_555 D DG 9 1_555 C DT 3 1_555 D DA 8 1_555 -0.564 -0.208 2.957 4.405 1.494 32.758 -0.590 1.653 2.847 2.633 -7.762 33.077 10 CC_DC102DT103:DA118DG119_DD C 102 ? D 119 ? C 103 ? D 118 ? 1 C DT 3 1_555 D DA 8 1_555 C DT 4 1_555 D DA 7 1_555 1.020 -0.007 3.050 -0.870 6.706 36.447 -0.847 -1.713 2.978 10.610 1.377 37.048 11 CC_DT103DT104:DA117DA118_DD C 103 ? D 118 ? C 104 ? D 117 ? 1 C DT 4 1_555 D DA 7 1_555 C DA 5 1_555 D DT 6 1_555 0.605 -0.591 2.736 -0.656 -3.109 38.089 -0.573 -0.993 2.763 -4.754 1.002 38.216 12 CC_DT104DA105:DT116DA117_DD C 104 ? D 117 ? C 105 ? D 116 ? 1 C DA 5 1_555 D DT 6 1_555 C DA 6 1_555 D DT 5 1_555 -1.201 -0.221 4.241 22.339 21.456 32.932 -2.629 4.008 2.464 30.721 -31.985 44.914 13 CC_DA105DA106:DT115DT116_DD C 105 ? D 116 ? C 106 ? D 115 ? 1 C DA 6 1_555 D DT 5 1_555 C DT 7 1_555 D DA 4 1_555 -0.224 -0.533 2.709 -20.573 1.400 23.611 -1.217 -2.932 2.179 2.828 41.547 31.251 14 CC_DA106DT107:DA114DT115_DD C 106 ? D 115 ? C 107 ? D 114 ? 1 C DT 7 1_555 D DA 4 1_555 C DT 8 1_555 D DA 3 1_555 -1.244 -0.037 2.880 3.010 3.477 34.823 -0.510 2.451 2.749 5.779 -5.002 35.116 15 CC_DT107DT108:DA113DA114_DD C 107 ? D 114 ? C 108 ? D 113 ? 1 C DT 8 1_555 D DA 3 1_555 C DC 9 1_555 D DG 2 1_555 0.246 0.701 2.858 5.403 5.981 33.671 0.350 0.336 2.939 10.146 -9.165 34.595 16 CC_DT108DC109:DG112DA113_DD C 108 ? D 113 ? C 109 ? D 112 ? 1 C DC 9 1_555 D DG 2 1_555 C DG 10 1_555 D DC 1 1_555 -1.144 1.003 3.409 -5.055 -3.705 43.061 1.730 1.031 3.422 -5.015 6.843 43.493 17 CC_DC109DG110:DC111DG112_DD C 109 ? D 112 ? C 110 ? D 111 ? # _atom_sites.entry_id 1N4E _atom_sites.fract_transf_matrix[1][1] 0.047371 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018515 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013479 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_