HEADER DNA 30-OCT-02 1N4E TITLE CRYSTAL STRUCTURE OF A DNA DECAMER CONTAINING A THYMINE-DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3'; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS UV-DAMAGED DNA, THYMINE DIMER, DNA DECAMER, DNA EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,K.ZHANG,Y.REN,S.NADJI,N.SINHA,J.-S.TAYLOR,C.KANG REVDAT 4 14-FEB-24 1N4E 1 LINK REVDAT 3 27-APR-11 1N4E 1 JRNL REVDAT 2 24-FEB-09 1N4E 1 VERSN REVDAT 1 04-FEB-03 1N4E 0 JRNL AUTH H.PARK,K.ZHANG,Y.REN,S.NADJI,N.SINHA,J.S.TAYLOR,C.KANG JRNL TITL CRYSTAL STRUCTURE OF A DNA DECAMER CONTAINING A CIS-SYN JRNL TITL 2 THYMINE DIMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 15965 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12456887 JRNL DOI 10.1073/PNAS.242422699 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 3061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 14 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 808 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, HEPES-NA, PEG 400, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 10.55500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 10.55500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 1 C4' DG A 1 C3' -0.064 REMARK 500 DG A 1 O3' DG A 1 C3' -0.067 REMARK 500 DC A 2 C5' DC A 2 C4' 0.046 REMARK 500 DC A 2 C2' DC A 2 C1' -0.124 REMARK 500 DT A 3 C6 DT A 3 N1 -0.073 REMARK 500 DT A 3 C5 DT A 3 C7 0.045 REMARK 500 DT A 4 P DT A 4 O5' -0.088 REMARK 500 DA A 5 C3' DA A 5 C2' -0.067 REMARK 500 DA A 5 C4 DA A 5 C5 -0.050 REMARK 500 DA A 5 C5 DA A 5 C6 -0.055 REMARK 500 DA A 5 O3' DA A 6 P -0.101 REMARK 500 DA A 6 C4 DA A 6 C5 -0.056 REMARK 500 DA A 6 C8 DA A 6 N9 -0.056 REMARK 500 DT A 7 C5' DT A 7 C4' -0.092 REMARK 500 DT A 7 C2' DT A 7 C1' -0.075 REMARK 500 DT A 8 C4' DT A 8 C3' -0.092 REMARK 500 DT A 8 C5 DT A 8 C6 0.049 REMARK 500 DT A 8 C5 DT A 8 C7 0.055 REMARK 500 DG A 10 C3' DG A 10 C2' -0.084 REMARK 500 DG A 10 N9 DG A 10 C4 -0.071 REMARK 500 DC B 11 C3' DC B 11 C2' -0.067 REMARK 500 DC B 11 O4' DC B 11 C4' -0.061 REMARK 500 DC B 11 N1 DC B 11 C2 -0.099 REMARK 500 DC B 11 C2 DC B 11 N3 -0.092 REMARK 500 DC B 11 C4 DC B 11 C5 -0.091 REMARK 500 DC B 11 O3' DG B 12 P -0.112 REMARK 500 DG B 12 P DG B 12 O5' -0.087 REMARK 500 DG B 12 C4 DG B 12 C5 -0.043 REMARK 500 DG B 12 C5 DG B 12 C6 -0.097 REMARK 500 DG B 12 N9 DG B 12 C4 -0.060 REMARK 500 DG B 12 O3' DA B 13 P -0.086 REMARK 500 DA B 13 C3' DA B 13 C2' -0.067 REMARK 500 DA B 14 O3' DA B 14 C3' -0.042 REMARK 500 DA B 14 C6 DA B 14 N1 -0.048 REMARK 500 DT B 15 C2 DT B 15 N3 -0.058 REMARK 500 DT B 15 C5 DT B 15 C7 0.117 REMARK 500 DT B 16 C5 DT B 16 C6 -0.048 REMARK 500 DT B 16 C5 DT B 16 C7 0.073 REMARK 500 DA B 17 C5 DA B 17 C6 -0.072 REMARK 500 DA B 17 C6 DA B 17 N1 -0.060 REMARK 500 DA B 17 N9 DA B 17 C4 -0.045 REMARK 500 DA B 18 P DA B 18 O5' -0.063 REMARK 500 DA B 18 O3' DA B 18 C3' -0.043 REMARK 500 DA B 18 N1 DA B 18 C2 -0.056 REMARK 500 DA B 18 C4 DA B 18 C5 -0.046 REMARK 500 DA B 18 C5 DA B 18 C6 -0.064 REMARK 500 DG B 19 O3' DG B 19 C3' -0.051 REMARK 500 DG B 19 O3' DC B 20 P -0.075 REMARK 500 DC B 20 C4' DC B 20 C3' -0.073 REMARK 500 DC B 20 O4' DC B 20 C4' -0.080 REMARK 500 REMARK 500 THIS ENTRY HAS 95 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 1 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT A 3 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT A 4 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 5 O3' - P - O5' ANGL. DEV. = -20.6 DEGREES REMARK 500 DA A 5 O5' - C5' - C4' ANGL. DEV. = -7.9 DEGREES REMARK 500 DA A 5 O4' - C4' - C3' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA A 5 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA A 5 N1 - C6 - N6 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA A 5 C5 - C6 - N6 ANGL. DEV. = -6.3 DEGREES REMARK 500 DA A 5 C3' - O3' - P ANGL. DEV. = 10.2 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DA A 6 N1 - C2 - N3 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT A 7 C3' - C2' - C1' ANGL. DEV. = -8.2 DEGREES REMARK 500 DT A 8 O4' - C4' - C3' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 8 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DT A 8 C1' - O4' - C4' ANGL. DEV. = 5.8 DEGREES REMARK 500 DT A 8 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT A 8 C3' - C2' - C1' ANGL. DEV. = 9.8 DEGREES REMARK 500 DT A 8 O4' - C1' - C2' ANGL. DEV. = -12.6 DEGREES REMARK 500 DT A 8 C6 - N1 - C2 ANGL. DEV. = -3.5 DEGREES REMARK 500 DT A 8 N1 - C2 - N3 ANGL. DEV. = 5.6 DEGREES REMARK 500 DT A 8 C4 - C5 - C6 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT A 8 N3 - C2 - O2 ANGL. DEV. = -7.8 DEGREES REMARK 500 DT A 8 C4 - C5 - C7 ANGL. DEV. = -6.9 DEGREES REMARK 500 DT A 8 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG A 10 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 10 C1' - O4' - C4' ANGL. DEV. = -9.6 DEGREES REMARK 500 DG A 10 O4' - C1' - C2' ANGL. DEV. = 7.0 DEGREES REMARK 500 DG A 10 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 10 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG A 10 N1 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC B 11 O4' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 DC B 11 C3' - C2' - C1' ANGL. DEV. = -9.4 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC B 11 C6 - N1 - C2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC B 11 N1 - C2 - N3 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC B 11 C2 - N3 - C4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC B 11 N3 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC B 11 C4 - C5 - C6 ANGL. DEV. = -6.2 DEGREES REMARK 500 DC B 11 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 11 N3 - C4 - N4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 11 C5 - C4 - N4 ANGL. DEV. = -8.0 DEGREES REMARK 500 DC B 11 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 DG B 12 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 175 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A 2 0.07 SIDE CHAIN REMARK 500 DG A 10 0.06 SIDE CHAIN REMARK 500 DC B 11 0.07 SIDE CHAIN REMARK 500 DA C 105 0.06 SIDE CHAIN REMARK 500 DG D 112 0.08 SIDE CHAIN REMARK 500 DG D 119 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1N4E A 1 10 PDB 1N4E 1N4E 1 10 DBREF 1N4E B 11 20 PDB 1N4E 1N4E 11 20 DBREF 1N4E C 101 110 PDB 1N4E 1N4E 101 110 DBREF 1N4E D 111 120 PDB 1N4E 1N4E 111 120 SEQRES 1 A 10 DG DC DT DT DA DA DT DT DC DG SEQRES 1 B 10 DC DG DA DA DT DT DA DA DG DC SEQRES 1 C 10 DG DC DT DT DA DA DT DT DC DG SEQRES 1 D 10 DC DG DA DA DT DT DA DA DG DC FORMUL 5 HOH *56(H2 O) LINK C5 DT B 15 C5 DT B 16 1555 1555 1.51 LINK C6 DT B 15 C6 DT B 16 1555 1555 1.54 LINK C5 DT D 115 C5 DT D 116 1555 1555 1.52 LINK C6 DT D 115 C6 DT D 116 1555 1555 1.53 CRYST1 21.110 54.010 74.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.047371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013479 0.00000