HEADER HYDROLASE/HYDROLASE INHIBITOR 03-NOV-02 1N51 TITLE AMINOPEPTIDASE P IN COMPLEX WITH THE INHIBITOR APSTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOPEPTIDASE P; COMPND 5 EC: 3.4.11.9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: APSTATIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PEPP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AN1459; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPL450; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPL670; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC KEYWDS AMINOPEPTIDASE, PROLINE SPECIFIC, MANGANESE ENZYME, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GRAHAM,M.J.MAHER,M.H.LEE,W.H.SIMMONS,H.C.FREEMAN,J.M.GUSS REVDAT 6 15-NOV-23 1N51 1 LINK ATOM REVDAT 5 25-OCT-23 1N51 1 REMARK LINK REVDAT 4 13-JUL-11 1N51 1 VERSN REVDAT 3 24-FEB-09 1N51 1 VERSN REVDAT 2 12-OCT-04 1N51 1 JRNL REVDAT 1 16-DEC-03 1N51 0 JRNL AUTH S.C.GRAHAM,M.J.MAHER,W.H.SIMMONS,H.C.FREEMAN,J.M.GUSS JRNL TITL STRUCTURE OF ESCHERICHIA COLI AMINOPEPTIDASE P IN COMPLEX JRNL TITL 2 WITH THE INHIBITOR APSTATIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1770 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15388923 JRNL DOI 10.1107/S0907444904018724 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.T.BRUNGER,P.D.ADAMS,G.M.CLORE,W.L.DELANO,P.GROS, REMARK 1 AUTH 2 R.GROSSE-KUNSTLEVE,J.-S.JIANG,J.KUSZEWSKI,M.NILGES, REMARK 1 AUTH 3 N.S.PANNU,R.J.READ,L.M.RICE,T.SIMONSON,G.WARREN REMARK 1 TITL CRYSTALLOGRAPHY & NMR SYSTEM: A NEW SOFTWARE SUITE FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE DETERMINATION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 905 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 48993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5652 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 308 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.17000 REMARK 3 B22 (A**2) : 5.15000 REMARK 3 B33 (A**2) : -10.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 37.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.83 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB 1AZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE, SODIUM CACODYLATE, REMARK 280 MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.65950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.50250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.75125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.65950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.25375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 173.25375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.65950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.75125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.65950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.50250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.65950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 115.50250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.65950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 173.25375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.75125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.65950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.75125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 173.25375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.65950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.65950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 115.50250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A TETRAMER FORMED BY THE REMARK 300 CRYSTALLOGRAPHIC OPERATIONS: (X,Y,Z), (-Y+1/2,-X+1/2,-Z+1/2), (Y-1/ REMARK 300 2,X+1/2,-Z+1/2), (-X,1-Y,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -69.65950 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 69.65950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.50250 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 139.31900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 69.65950 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 69.65950 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 115.50250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 69.65950 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 69.65950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.50250 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -69.65950 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 69.65950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.50250 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 139.31900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 69.65950 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 69.65950 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 115.50250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2157 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2427 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE APSTATIN IS PEPTIDE-LIKE, A MEMBER OF ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: APSTATIN REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO B 3 REMARK 475 ALA B 4 REMARK 475 NH2 B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -121.77 50.77 REMARK 500 THR A 53 -38.25 -142.21 REMARK 500 ASN A 56 42.37 -95.73 REMARK 500 TRP A 88 -68.98 -100.53 REMARK 500 PHE A 89 44.05 -96.29 REMARK 500 HIS A 243 58.79 -114.56 REMARK 500 LYS A 425 -17.65 -141.75 REMARK 500 PRO B 2 112.46 -36.44 REMARK 500 PRO B 3 114.24 -33.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 ASP A 260 OD2 55.9 REMARK 620 3 ASP A 271 OD1 91.9 147.6 REMARK 620 4 GLU A 406 OE1 99.1 102.8 84.3 REMARK 620 5 01B B 1 O2 150.6 96.7 113.9 97.4 REMARK 620 6 01B B 1 N 88.8 84.3 92.1 171.4 76.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 HIS A 354 NE2 94.8 REMARK 620 3 GLU A 383 OE2 165.7 87.1 REMARK 620 4 GLU A 406 OE2 85.1 138.7 84.2 REMARK 620 5 01B B 1 O2 91.2 126.6 98.9 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2163 O REMARK 620 2 HOH A2166 O 167.8 REMARK 620 3 HOH A2171 O 93.3 98.2 REMARK 620 4 HOH A2172 O 96.3 89.0 85.4 REMARK 620 5 HOH A2173 O 95.4 78.4 100.3 166.7 REMARK 620 6 HOH A2174 O 86.3 83.0 172.4 87.1 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF APSTATIN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AZ9 RELATED DB: PDB REMARK 900 NATIVE, HEXAGONAL FORM, HIGH PH REMARK 900 RELATED ID: 1A16 RELATED DB: PDB REMARK 900 PROLEU DIPEPTIDE INHIBITOR COMPLEX, TETRAGONAL FORM, HIGH PH REMARK 900 RELATED ID: 1JAW RELATED DB: PDB REMARK 900 ACETATE BOUND, TETRAGONAL FORM, LOW PH REMARK 900 RELATED ID: 1M35 RELATED DB: PDB REMARK 900 NATIVE, ORTHORHOMBIC FORM, HIGH PH DBREF 1N51 A 1 440 UNP P15034 AMPP_ECOLI 1 440 DBREF 1N51 B 1 5 PDB 1N51 1N51 1 5 SEQRES 1 A 440 SER GLU ILE SER ARG GLN GLU PHE GLN ARG ARG ARG GLN SEQRES 2 A 440 ALA LEU VAL GLU GLN MET GLN PRO GLY SER ALA ALA LEU SEQRES 3 A 440 ILE PHE ALA ALA PRO GLU VAL THR ARG SER ALA ASP SER SEQRES 4 A 440 GLU TYR PRO TYR ARG GLN ASN SER ASP PHE TRP TYR PHE SEQRES 5 A 440 THR GLY PHE ASN GLU PRO GLU ALA VAL LEU VAL LEU ILE SEQRES 6 A 440 LYS SER ASP ASP THR HIS ASN HIS SER VAL LEU PHE ASN SEQRES 7 A 440 ARG VAL ARG ASP LEU THR ALA GLU ILE TRP PHE GLY ARG SEQRES 8 A 440 ARG LEU GLY GLN ASP ALA ALA PRO GLU LYS LEU GLY VAL SEQRES 9 A 440 ASP ARG ALA LEU ALA PHE SER GLU ILE ASN GLN GLN LEU SEQRES 10 A 440 TYR GLN LEU LEU ASN GLY LEU ASP VAL VAL TYR HIS ALA SEQRES 11 A 440 GLN GLY GLU TYR ALA TYR ALA ASP VAL ILE VAL ASN SER SEQRES 12 A 440 ALA LEU GLU LYS LEU ARG LYS GLY SER ARG GLN ASN LEU SEQRES 13 A 440 THR ALA PRO ALA THR MET ILE ASP TRP ARG PRO VAL VAL SEQRES 14 A 440 HIS GLU MET ARG LEU PHE LYS SER PRO GLU GLU ILE ALA SEQRES 15 A 440 VAL LEU ARG ARG ALA GLY GLU ILE THR ALA MET ALA HIS SEQRES 16 A 440 THR ARG ALA MET GLU LYS CYS ARG PRO GLY MET PHE GLU SEQRES 17 A 440 TYR HIS LEU GLU GLY GLU ILE HIS HIS GLU PHE ASN ARG SEQRES 18 A 440 HIS GLY ALA ARG TYR PRO SER TYR ASN THR ILE VAL GLY SEQRES 19 A 440 SER GLY GLU ASN GLY CYS ILE LEU HIS TYR THR GLU ASN SEQRES 20 A 440 GLU CYS GLU MET ARG ASP GLY ASP LEU VAL LEU ILE ASP SEQRES 21 A 440 ALA GLY CYS GLU TYR LYS GLY TYR ALA GLY ASP ILE THR SEQRES 22 A 440 ARG THR PHE PRO VAL ASN GLY LYS PHE THR GLN ALA GLN SEQRES 23 A 440 ARG GLU ILE TYR ASP ILE VAL LEU GLU SER LEU GLU THR SEQRES 24 A 440 SER LEU ARG LEU TYR ARG PRO GLY THR SER ILE LEU GLU SEQRES 25 A 440 VAL THR GLY GLU VAL VAL ARG ILE MET VAL SER GLY LEU SEQRES 26 A 440 VAL LYS LEU GLY ILE LEU LYS GLY ASP VAL ASP GLU LEU SEQRES 27 A 440 ILE ALA GLN ASN ALA HIS ARG PRO PHE PHE MET HIS GLY SEQRES 28 A 440 LEU SER HIS TRP LEU GLY LEU ASP VAL HIS ASP VAL GLY SEQRES 29 A 440 VAL TYR GLY GLN ASP ARG SER ARG ILE LEU GLU PRO GLY SEQRES 30 A 440 MET VAL LEU THR VAL GLU PRO GLY LEU TYR ILE ALA PRO SEQRES 31 A 440 ASP ALA GLU VAL PRO GLU GLN TYR ARG GLY ILE GLY ILE SEQRES 32 A 440 ARG ILE GLU ASP ASP ILE VAL ILE THR GLU THR GLY ASN SEQRES 33 A 440 GLU ASN LEU THR ALA SER VAL VAL LYS LYS PRO GLU GLU SEQRES 34 A 440 ILE GLU ALA LEU MET VAL ALA ALA ARG LYS GLN SEQRES 1 B 5 01B PRO PRO ALA NH2 HET 01B B 1 13 HET NH2 B 5 1 HET MN A2001 1 HET MN A2002 1 HET MN A2003 1 HETNAM 01B (2S,3R)-3-AMINO-2-HYDROXY-4-PHENYLBUTANOIC ACID HETNAM NH2 AMINO GROUP HETNAM MN MANGANESE (II) ION FORMUL 2 01B C10 H13 N O3 FORMUL 2 NH2 H2 N FORMUL 3 MN 3(MN 2+) FORMUL 6 HOH *425(H2 O) HELIX 1 1 SER A 4 MET A 19 1 16 HELIX 2 2 ASN A 46 GLY A 54 1 9 HELIX 3 3 ASP A 82 GLY A 90 1 9 HELIX 4 4 LEU A 93 GLY A 103 1 11 HELIX 5 5 GLU A 112 ASN A 122 1 11 HELIX 6 6 TYR A 134 GLY A 151 1 18 HELIX 7 7 SER A 152 ASN A 155 5 4 HELIX 8 8 TRP A 165 LEU A 174 1 10 HELIX 9 9 SER A 177 CYS A 202 1 26 HELIX 10 10 PHE A 207 HIS A 222 1 16 HELIX 11 11 GLU A 237 ILE A 241 5 5 HELIX 12 12 THR A 283 TYR A 304 1 22 HELIX 13 13 SER A 309 LEU A 328 1 20 HELIX 14 14 ASP A 334 GLN A 341 1 8 HELIX 15 15 GLY A 367 SER A 371 5 5 HELIX 16 16 PRO A 395 ARG A 399 5 5 HELIX 17 17 LYS A 426 ARG A 438 1 13 SHEET 1 A 6 ARG A 106 ALA A 109 0 SHEET 2 A 6 HIS A 71 ASN A 78 1 N LEU A 76 O LEU A 108 SHEET 3 A 6 VAL A 61 ASP A 68 -1 N VAL A 63 O VAL A 75 SHEET 4 A 6 SER A 23 PHE A 28 -1 N SER A 23 O LYS A 66 SHEET 5 A 6 VAL A 126 HIS A 129 1 O TYR A 128 N ALA A 24 SHEET 6 A 6 THR A 161 ILE A 163 1 O THR A 161 N VAL A 127 SHEET 1 B 2 THR A 34 SER A 36 0 SHEET 2 B 2 SER A 39 GLU A 40 -1 O SER A 39 N SER A 36 SHEET 1 C 3 TYR A 226 PRO A 227 0 SHEET 2 C 3 CYS A 263 TYR A 265 -1 O GLU A 264 N TYR A 226 SHEET 3 C 3 TYR A 268 ALA A 269 -1 O TYR A 268 N TYR A 265 SHEET 1 D 3 ILE A 232 SER A 235 0 SHEET 2 D 3 LEU A 256 ALA A 261 -1 O LEU A 258 N GLY A 234 SHEET 3 D 3 ILE A 272 PRO A 277 -1 O ARG A 274 N ILE A 259 SHEET 1 E 3 VAL A 379 VAL A 382 0 SHEET 2 E 3 ASP A 407 ILE A 411 -1 O ILE A 409 N LEU A 380 SHEET 3 E 3 ASN A 416 ASN A 418 -1 O GLU A 417 N VAL A 410 SHEET 1 F 2 GLY A 385 ILE A 388 0 SHEET 2 F 2 ILE A 401 ARG A 404 -1 O ILE A 401 N ILE A 388 LINK C 01B B 1 N PRO B 2 1555 1555 1.34 LINK OD1 ASP A 260 MN MN A2002 1555 1555 2.17 LINK OD2 ASP A 260 MN MN A2002 1555 1555 2.46 LINK OD2 ASP A 271 MN MN A2001 1555 1555 2.08 LINK OD1 ASP A 271 MN MN A2002 1555 1555 2.08 LINK NE2 HIS A 354 MN MN A2001 1555 1555 2.07 LINK OE2 GLU A 383 MN MN A2001 1555 1555 2.33 LINK OE2 GLU A 406 MN MN A2001 1555 1555 1.97 LINK OE1 GLU A 406 MN MN A2002 1555 1555 2.11 LINK MN MN A2001 O2 01B B 1 1555 1555 2.20 LINK MN MN A2002 O2 01B B 1 1555 1555 1.88 LINK MN MN A2002 N 01B B 1 1555 1555 2.56 LINK MN MN A2003 O HOH A2163 1555 6555 2.35 LINK MN MN A2003 O HOH A2166 1555 1555 2.21 LINK MN MN A2003 O HOH A2171 1555 1555 2.31 LINK MN MN A2003 O HOH A2172 1555 1555 2.27 LINK MN MN A2003 O HOH A2173 1555 1555 2.13 LINK MN MN A2003 O HOH A2174 1555 1555 2.03 SITE 1 AC1 7 ASP A 271 HIS A 354 THR A 381 GLU A 383 SITE 2 AC1 7 GLU A 406 MN A2002 01B B 1 SITE 1 AC2 7 TYR A 229 ASP A 260 ASP A 271 THR A 273 SITE 2 AC2 7 GLU A 406 MN A2001 01B B 1 SITE 1 AC3 6 HOH A2163 HOH A2166 HOH A2171 HOH A2172 SITE 2 AC3 6 HOH A2173 HOH A2174 SITE 1 AC4 14 TRP A 88 TYR A 229 HIS A 243 ASP A 260 SITE 2 AC4 14 ASP A 271 HIS A 350 HIS A 354 HIS A 361 SITE 3 AC4 14 GLU A 383 ARG A 404 GLU A 406 MN A2001 SITE 4 AC4 14 MN A2002 HOH A2222 CRYST1 139.319 139.319 231.005 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004329 0.00000