HEADER ISOMERASE 04-NOV-02 1N55 TITLE 0.83A RESOLUTION STRUCTURE OF THE E65Q MUTANT OF LEISHMANIA MEXICANA TITLE 2 TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 2-PHOSPHOGLYCOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM, ATOMIC RESOLUTION, ENZYME-LIGAND COMPLEX, TRANSITION-STATE KEYWDS 2 ANALOGUE, LOW-BARRIER HYDROGEN BOND, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KURSULA,R.K.WIERENGA REVDAT 7 14-FEB-24 1N55 1 REMARK REVDAT 6 27-OCT-21 1N55 1 REMARK SEQADV REVDAT 5 13-JUL-11 1N55 1 VERSN REVDAT 4 19-MAY-09 1N55 1 REMARK REVDAT 3 24-FEB-09 1N55 1 VERSN REVDAT 2 11-JAN-05 1N55 1 JRNL REVDAT 1 21-JAN-03 1N55 0 JRNL AUTH I.KURSULA,R.K.WIERENGA JRNL TITL CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE COMPLEXED JRNL TITL 2 WITH 2-PHOSPHOGLYCOLATE AT 0.83-A RESOLUTION JRNL REF J.BIOL.CHEM. V. 278 9544 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12522213 JRNL DOI 10.1074/JBC.M211389200 REMARK 2 REMARK 2 RESOLUTION. 0.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.095 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.109 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4859 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 561 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.026 REMARK 3 ANGLE DISTANCES (A) : 0.044 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.441 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.081 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.110 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 241678 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.830 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1 M NA-ACETATE/NAOH, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.03600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.03600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.34600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.94800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 GOL A 801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1163 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1332 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 961 O HOH A 1179 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 70 CD LYS A 70 CE 0.178 REMARK 500 GLN A 132 CG GLN A 132 CD 0.151 REMARK 500 GLU A 135 CB GLU A 135 CG -0.116 REMARK 500 GLU A 135 CD GLU A 135 OE1 0.118 REMARK 500 GLU A 135 CD GLU A 135 OE2 -0.079 REMARK 500 GLU A 185 CD GLU A 185 OE1 -0.127 REMARK 500 GLU A 185 CD GLU A 185 OE2 0.079 REMARK 500 ARG A 250 CZ ARG A 250 NH1 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 26 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 ILE A 33 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 106 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 GLU A 115 CA - CB - CG ANGL. DEV. = -21.8 DEGREES REMARK 500 GLU A 115 OE1 - CD - OE2 ANGL. DEV. = 30.1 DEGREES REMARK 500 GLU A 115 CG - CD - OE2 ANGL. DEV. = -20.5 DEGREES REMARK 500 GLU A 135 OE1 - CD - OE2 ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU A 135 CG - CD - OE2 ANGL. DEV. = -16.7 DEGREES REMARK 500 LYS A 141 CD - CE - NZ ANGL. DEV. = -14.0 DEGREES REMARK 500 THR A 155 CA - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 THR A 155 CA - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 ASN A 160 CA - CB - CG ANGL. DEV. = -16.7 DEGREES REMARK 500 GLY A 175 C - N - CA ANGL. DEV. = -14.6 DEGREES REMARK 500 GLY A 175 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU A 189 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 201 CB - CG - OD1 ANGL. DEV. = 10.0 DEGREES REMARK 500 THR A 221 CA - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU A 241 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 GLU A 241 CB - CG - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 GLU A 241 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 244 CB - CG - OD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 244 CB - CG - OD2 ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 250 CD - NE - CZ ANGL. DEV. = 48.1 DEGREES REMARK 500 ARG A 250 NH1 - CZ - NH2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -149.61 54.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 210 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 175 10.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA A 650 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QDS RELATED DB: PDB REMARK 900 L.MEXICANA TIM E65Q MUTANT COMPLEXED WITH 2-PHOSPHOGLYCOLATE AT 2A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1IF2 RELATED DB: PDB REMARK 900 L.MEXICANA TIM E65Q MUTANT COMPLEXED WITH IPP DBREF 1N55 A 0 250 UNP P48499 TPIS_LEIME 1 251 SEQADV 1N55 GLN A 65 UNP P48499 GLU 66 ENGINEERED MUTATION SEQRES 1 A 251 MET SER ALA LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP SEQRES 2 A 251 LYS CYS ASN GLY THR THR ALA SER ILE GLU LYS LEU VAL SEQRES 3 A 251 GLN VAL PHE ASN GLU HIS THR ILE SER HIS ASP VAL GLN SEQRES 4 A 251 CYS VAL VAL ALA PRO THR PHE VAL HIS ILE PRO LEU VAL SEQRES 5 A 251 GLN ALA LYS LEU ARG ASN PRO LYS TYR VAL ILE SER ALA SEQRES 6 A 251 GLN ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU SEQRES 7 A 251 VAL SER MET PRO ILE LEU LYS ASP ILE GLY VAL HIS TRP SEQRES 8 A 251 VAL ILE LEU GLY HIS SER GLU ARG ARG THR TYR TYR GLY SEQRES 9 A 251 GLU THR ASP GLU ILE VAL ALA GLN LYS VAL SER GLU ALA SEQRES 10 A 251 CYS LYS GLN GLY PHE MET VAL ILE ALA CYS ILE GLY GLU SEQRES 11 A 251 THR LEU GLN GLN ARG GLU ALA ASN GLN THR ALA LYS VAL SEQRES 12 A 251 VAL LEU SER GLN THR SER ALA ILE ALA ALA LYS LEU THR SEQRES 13 A 251 LYS ASP ALA TRP ASN GLN VAL VAL LEU ALA TYR GLU PRO SEQRES 14 A 251 VAL TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLU SEQRES 15 A 251 GLN ALA GLN GLU VAL HIS LEU LEU LEU ARG LYS TRP VAL SEQRES 16 A 251 SER GLU ASN ILE GLY THR ASP VAL ALA ALA LYS LEU ARG SEQRES 17 A 251 ILE LEU TYR GLY GLY SER VAL ASN ALA ALA ASN ALA ALA SEQRES 18 A 251 THR LEU TYR ALA LYS PRO ASP ILE ASN GLY PHE LEU VAL SEQRES 19 A 251 GLY GLY ALA SER LEU LYS PRO GLU PHE ARG ASP ILE ILE SEQRES 20 A 251 ASP ALA THR ARG HET PGA A 650 18 HET ACY A 700 4 HET ACY A 701 4 HET GOL A 800 6 HET GOL A 801 6 HET GOL A 802 6 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PGA C2 H5 O6 P FORMUL 3 ACY 2(C2 H4 O2) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *561(H2 O) HELIX 1 1 THR A 17 HIS A 31 1 15 HELIX 2 2 THR A 44 VAL A 46 5 3 HELIX 3 3 HIS A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 GLY A 87 1 9 HELIX 5 5 HIS A 95 TYR A 102 1 8 HELIX 6 6 THR A 105 GLN A 119 1 15 HELIX 7 7 THR A 130 ALA A 136 1 7 HELIX 8 8 GLN A 138 ALA A 152 1 15 HELIX 9 9 LYS A 153 LEU A 154 5 2 HELIX 10 10 THR A 155 ASN A 160 5 6 HELIX 11 11 PRO A 168 ILE A 172 5 5 HELIX 12 12 THR A 179 ILE A 198 1 20 HELIX 13 13 GLY A 199 LEU A 206 1 8 HELIX 14 14 ASN A 218 ALA A 224 1 7 HELIX 15 15 GLY A 234 PRO A 240 5 7 HELIX 16 16 GLU A 241 ALA A 248 1 8 SHEET 1 A 9 ILE A 7 ASN A 11 0 SHEET 2 A 9 GLN A 38 ALA A 42 1 O VAL A 40 N ALA A 10 SHEET 3 A 9 TYR A 60 ALA A 64 1 O SER A 63 N VAL A 41 SHEET 4 A 9 TRP A 90 LEU A 93 1 O TRP A 90 N ALA A 64 SHEET 5 A 9 MET A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 A 9 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 7 A 9 ARG A 207 GLY A 211 1 O LEU A 209 N LEU A 164 SHEET 8 A 9 GLY A 230 VAL A 233 1 O GLY A 230 N TYR A 210 SHEET 9 A 9 ILE A 7 ASN A 11 1 N ALA A 9 O VAL A 233 SITE 1 AC1 16 ASN A 11 LYS A 13 HIS A 95 GLU A 167 SITE 2 AC1 16 ALA A 171 ILE A 172 GLY A 173 GLY A 212 SITE 3 AC1 16 SER A 213 LEU A 232 GLY A 234 GLY A 235 SITE 4 AC1 16 HOH A 803 HOH A 810 HOH A 846 HOH A 988 SITE 1 AC2 8 LYS A 84 GLN A 119 GLY A 120 TRP A 193 SITE 2 AC2 8 GOL A 800 HOH A 854 HOH A1137 HOH A1262 SITE 1 AC3 6 ARG A 134 ASN A 137 GLN A 138 THR A 139 SITE 2 AC3 6 HOH A 963 HOH A1256 SITE 1 AC4 10 LEU A 144 SER A 145 SER A 148 GLN A 161 SITE 2 AC4 10 TRP A 193 ACY A 700 HOH A 834 HOH A1106 SITE 3 AC4 10 HOH A1144 HOH A1252 SITE 1 AC5 9 PHE A 45 ASN A 66 GLY A 76 GLU A 77 SITE 2 AC5 9 ARG A 98 HOH A 809 HOH A 860 HOH A1332 SITE 3 AC5 9 HOH A1360 SITE 1 AC6 8 TRP A 170 LYS A 176 ASP A 244 HOH A 896 SITE 2 AC6 8 HOH A1092 HOH A1173 HOH A1227 HOH A1264 CRYST1 100.072 50.580 58.884 90.00 118.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009993 0.000000 0.005334 0.00000 SCALE2 0.000000 0.019771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019250 0.00000