data_1N69 # _entry.id 1N69 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.344 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1N69 RCSB RCSB017570 WWPDB D_1000017570 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1N69 _pdbx_database_status.recvd_initial_deposition_date 2002-11-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ahn, V.E.' 1 'Faull, K.F.' 2 'Whitelegge, J.P.' 3 'Fluharty, A.L.' 4 'Prive, G.G.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure of saposin B reveals a dimeric shell for lipid binding' Proc.Natl.Acad.Sci.USA 100 38 43 2003 PNASA6 US 0027-8424 0040 ? 12518053 10.1073/pnas.0136947100 1 'Expression, purification, crystallization and preliminary X-ray analysis of recombinant human saposin B' 'Protein Expr.Purif.' 27 186 193 2003 PEXPEJ US 1046-5928 0757 ? ? '10.1016/S1046-5928(02)00597-1' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ahn, V.E.' 1 ? primary 'Faull, K.F.' 2 ? primary 'Whitelegge, J.P.' 3 ? primary 'Fluharty, A.L.' 4 ? primary 'Prive, G.G.' 5 ? 1 'Ahn, V.E.' 6 ? 1 'Faull, K.F.' 7 ? 1 'Whitelegge, J.P.' 8 ? 1 'Higginson, J.' 9 ? 1 'Fluharty, A.L.' 10 ? 1 'Prive, G.G.' 11 ? # _cell.entry_id 1N69 _cell.length_a 72.140 _cell.length_b 72.140 _cell.length_c 94.366 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N69 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SAPOSIN B' 9128.529 3 ? ? ? ? 2 non-polymer syn 1,2-Distearoyl-sn-glycerophosphoethanolamine 748.065 1 ? ? ? ? 3 water nat water 18.015 90 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Proactivator polypeptide, Sap-B, Sphingolipid activator protein 1, SAP-1, Cerebroside sulfate activator, CSAct, CS-Act, Sulfatide/GM1 activator, GALACTOSYLCERBROSIDE ACTIVATOR ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQPKEICALVGFCD E ; _entity_poly.pdbx_seq_one_letter_code_can ;MDGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQPKEICALVGFCD E ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 GLY n 1 4 ASP n 1 5 VAL n 1 6 CYS n 1 7 GLN n 1 8 ASP n 1 9 CYS n 1 10 ILE n 1 11 GLN n 1 12 MET n 1 13 VAL n 1 14 THR n 1 15 ASP n 1 16 ILE n 1 17 GLN n 1 18 THR n 1 19 ALA n 1 20 VAL n 1 21 ARG n 1 22 THR n 1 23 ASN n 1 24 SER n 1 25 THR n 1 26 PHE n 1 27 VAL n 1 28 GLN n 1 29 ALA n 1 30 LEU n 1 31 VAL n 1 32 GLU n 1 33 HIS n 1 34 VAL n 1 35 LYS n 1 36 GLU n 1 37 GLU n 1 38 CYS n 1 39 ASP n 1 40 ARG n 1 41 LEU n 1 42 GLY n 1 43 PRO n 1 44 GLY n 1 45 MET n 1 46 ALA n 1 47 ASP n 1 48 ILE n 1 49 CYS n 1 50 LYS n 1 51 ASN n 1 52 TYR n 1 53 ILE n 1 54 SER n 1 55 GLN n 1 56 TYR n 1 57 SER n 1 58 GLU n 1 59 ILE n 1 60 ALA n 1 61 ILE n 1 62 GLN n 1 63 MET n 1 64 MET n 1 65 MET n 1 66 HIS n 1 67 MET n 1 68 GLN n 1 69 PRO n 1 70 LYS n 1 71 GLU n 1 72 ILE n 1 73 CYS n 1 74 ALA n 1 75 LEU n 1 76 VAL n 1 77 GLY n 1 78 PHE n 1 79 CYS n 1 80 ASP n 1 81 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'Prosaposin, PSAP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'AD494(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET-16(B)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAP_HUMAN _struct_ref.pdbx_db_accession P07602 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQPKEICALVGFCDE _struct_ref.pdbx_align_begin 195 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1N69 A 3 ? 81 ? P07602 195 ? 273 ? 1 79 2 1 1N69 B 3 ? 81 ? P07602 195 ? 273 ? 1 79 3 1 1N69 C 3 ? 81 ? P07602 195 ? 273 ? 1 79 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1N69 MET A 1 ? UNP P07602 ? ? 'cloning artifact' -1 1 1 1N69 ASP A 2 ? UNP P07602 ? ? 'cloning artifact' 0 2 2 1N69 MET B 1 ? UNP P07602 ? ? 'cloning artifact' -1 3 2 1N69 ASP B 2 ? UNP P07602 ? ? 'cloning artifact' 0 4 3 1N69 MET C 1 ? UNP P07602 ? ? 'cloning artifact' -1 5 3 1N69 ASP C 2 ? UNP P07602 ? ? 'cloning artifact' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PE non-polymer . 1,2-Distearoyl-sn-glycerophosphoethanolamine '3-SN-PHOSPHATIDYLETHANOLAMINE; 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE' 'C41 H82 N O8 P' 748.065 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1N69 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details ;POLYETHYLENE GLYCOL 3350, MAGNESIUM ACETATE, SODIUM CACODYLATE, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K. THE CRYSTAL WAS TREATED WITH A MOTHER LIQUOR SOLUTION CONTAINING 0.1% HYDROGEN PEROXIDE PRIOR TO FREEZING. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-04-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'MAD, SE-MET' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9789 1.0 2 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F2' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9789, 0.9793' # _reflns.entry_id 1N69 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 14644 _reflns.number_all 14644 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 9 _reflns.B_iso_Wilson_estimate 22.7 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.289 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 14644 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1N69 _refine.ls_number_reflns_obs 14613 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.74 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 729 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.8 _refine.aniso_B[1][1] -3.05 _refine.aniso_B[2][2] -3.05 _refine.aniso_B[3][3] 6.11 _refine.aniso_B[1][2] 1.75 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.321762 _refine.solvent_model_param_bsol 52.3682 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1N69 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.31 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1819 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1955 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 19.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.82 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 2096 _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs 90.8 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 110 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 PEH.PARAM PEH.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1N69 _struct.title 'Crystal structure of human saposin B' _struct.pdbx_descriptor 'Proactivator polypeptide, DI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1N69 _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'LIPID BINDING PROTEIN, GLYCOSPHINGOLIPID ACTIVATOR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 3 ? ASN A 23 ? GLY A 1 ASN A 21 1 ? 21 HELX_P HELX_P2 2 THR A 25 ? CYS A 38 ? THR A 23 CYS A 36 1 ? 14 HELX_P HELX_P3 3 ASP A 39 ? GLY A 42 ? ASP A 37 GLY A 40 5 ? 4 HELX_P HELX_P4 4 GLY A 44 ? MET A 65 ? GLY A 42 MET A 63 1 ? 22 HELX_P HELX_P5 5 GLN A 68 ? VAL A 76 ? GLN A 66 VAL A 74 1 ? 9 HELX_P HELX_P6 6 ASP B 4 ? ASN B 23 ? ASP B 2 ASN B 21 1 ? 20 HELX_P HELX_P7 7 VAL B 27 ? GLU B 37 ? VAL B 25 GLU B 35 1 ? 11 HELX_P HELX_P8 8 CYS B 38 ? GLY B 42 ? CYS B 36 GLY B 40 5 ? 5 HELX_P HELX_P9 9 GLY B 44 ? MET B 65 ? GLY B 42 MET B 63 1 ? 22 HELX_P HELX_P10 10 GLN B 68 ? VAL B 76 ? GLN B 66 VAL B 74 1 ? 9 HELX_P HELX_P11 11 GLY C 3 ? ASN C 23 ? GLY C 1 ASN C 21 1 ? 21 HELX_P HELX_P12 12 THR C 25 ? ASP C 39 ? THR C 23 ASP C 37 1 ? 15 HELX_P HELX_P13 13 ARG C 40 ? GLY C 42 ? ARG C 38 GLY C 40 5 ? 3 HELX_P HELX_P14 14 GLY C 44 ? MET C 65 ? GLY C 42 MET C 63 1 ? 22 HELX_P HELX_P15 15 GLN C 68 ? GLY C 77 ? GLN C 66 GLY C 75 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 79 SG ? ? A CYS 4 A CYS 77 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 7 A CYS 71 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 49 SG ? ? A CYS 36 A CYS 47 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 79 SG ? ? B CYS 4 B CYS 77 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf5 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 73 SG ? ? B CYS 7 B CYS 71 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf6 disulf ? ? B CYS 38 SG ? ? ? 1_555 B CYS 49 SG ? ? B CYS 36 B CYS 47 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf7 disulf ? ? C CYS 6 SG ? ? ? 1_555 C CYS 79 SG ? ? C CYS 4 C CYS 77 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf8 disulf ? ? C CYS 9 SG ? ? ? 1_555 C CYS 73 SG ? ? C CYS 7 C CYS 71 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf9 disulf ? ? C CYS 38 SG ? ? ? 1_555 C CYS 49 SG ? ? C CYS 36 C CYS 47 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3PE _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE 3PE A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 ARG A 40 ? ARG A 38 . ? 1_555 ? 2 AC1 11 LEU A 41 ? LEU A 39 . ? 1_555 ? 3 AC1 11 MET A 45 ? MET A 43 . ? 1_555 ? 4 AC1 11 ILE A 53 ? ILE A 51 . ? 1_555 ? 5 AC1 11 GLN A 68 ? GLN A 66 . ? 6_655 ? 6 AC1 11 HOH E . ? HOH A 515 . ? 6_655 ? 7 AC1 11 VAL B 31 ? VAL B 29 . ? 1_555 ? 8 AC1 11 TYR B 52 ? TYR B 50 . ? 1_555 ? 9 AC1 11 TYR B 56 ? TYR B 54 . ? 1_555 ? 10 AC1 11 ILE B 61 ? ILE B 59 . ? 1_555 ? 11 AC1 11 MET B 67 ? MET B 65 . ? 1_555 ? # _database_PDB_matrix.entry_id 1N69 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1N69 _atom_sites.fract_transf_matrix[1][1] 0.013862 _atom_sites.fract_transf_matrix[1][2] 0.008003 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016006 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010597 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 ASP 2 0 ? ? ? A . n A 1 3 GLY 3 1 1 GLY GLY A . n A 1 4 ASP 4 2 2 ASP ASP A . n A 1 5 VAL 5 3 3 VAL VAL A . n A 1 6 CYS 6 4 4 CYS CYS A . n A 1 7 GLN 7 5 5 GLN GLN A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 CYS 9 7 7 CYS CYS A . n A 1 10 ILE 10 8 8 ILE ILE A . n A 1 11 GLN 11 9 9 GLN GLN A . n A 1 12 MET 12 10 10 MET MET A . n A 1 13 VAL 13 11 11 VAL VAL A . n A 1 14 THR 14 12 12 THR THR A . n A 1 15 ASP 15 13 13 ASP ASP A . n A 1 16 ILE 16 14 14 ILE ILE A . n A 1 17 GLN 17 15 15 GLN GLN A . n A 1 18 THR 18 16 16 THR THR A . n A 1 19 ALA 19 17 17 ALA ALA A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 ARG 21 19 19 ARG ARG A . n A 1 22 THR 22 20 20 THR THR A . n A 1 23 ASN 23 21 21 ASN ASN A . n A 1 24 SER 24 22 22 SER SER A . n A 1 25 THR 25 23 23 THR THR A . n A 1 26 PHE 26 24 24 PHE PHE A . n A 1 27 VAL 27 25 25 VAL VAL A . n A 1 28 GLN 28 26 26 GLN GLN A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 LEU 30 28 28 LEU LEU A . n A 1 31 VAL 31 29 29 VAL VAL A . n A 1 32 GLU 32 30 30 GLU GLU A . n A 1 33 HIS 33 31 31 HIS HIS A . n A 1 34 VAL 34 32 32 VAL VAL A . n A 1 35 LYS 35 33 33 LYS LYS A . n A 1 36 GLU 36 34 34 GLU GLU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 CYS 38 36 36 CYS CYS A . n A 1 39 ASP 39 37 37 ASP ASP A . n A 1 40 ARG 40 38 38 ARG ARG A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 PRO 43 41 41 PRO PRO A . n A 1 44 GLY 44 42 42 GLY GLY A . n A 1 45 MET 45 43 43 MET MET A . n A 1 46 ALA 46 44 44 ALA ALA A . n A 1 47 ASP 47 45 45 ASP ASP A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 CYS 49 47 47 CYS CYS A . n A 1 50 LYS 50 48 48 LYS LYS A . n A 1 51 ASN 51 49 49 ASN ASN A . n A 1 52 TYR 52 50 50 TYR TYR A . n A 1 53 ILE 53 51 51 ILE ILE A . n A 1 54 SER 54 52 52 SER SER A . n A 1 55 GLN 55 53 53 GLN GLN A . n A 1 56 TYR 56 54 54 TYR TYR A . n A 1 57 SER 57 55 55 SER SER A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 ALA 60 58 58 ALA ALA A . n A 1 61 ILE 61 59 59 ILE ILE A . n A 1 62 GLN 62 60 60 GLN GLN A . n A 1 63 MET 63 61 61 MET MET A . n A 1 64 MET 64 62 62 MET MET A . n A 1 65 MET 65 63 63 MET MET A . n A 1 66 HIS 66 64 64 HIS HIS A . n A 1 67 MET 67 65 65 MET MET A . n A 1 68 GLN 68 66 66 GLN GLN A . n A 1 69 PRO 69 67 67 PRO PRO A . n A 1 70 LYS 70 68 68 LYS LYS A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 ILE 72 70 70 ILE ILE A . n A 1 73 CYS 73 71 71 CYS CYS A . n A 1 74 ALA 74 72 72 ALA ALA A . n A 1 75 LEU 75 73 73 LEU LEU A . n A 1 76 VAL 76 74 74 VAL VAL A . n A 1 77 GLY 77 75 75 GLY GLY A . n A 1 78 PHE 78 76 76 PHE PHE A . n A 1 79 CYS 79 77 77 CYS CYS A . n A 1 80 ASP 80 78 78 ASP ASP A . n A 1 81 GLU 81 79 ? ? ? A . n B 1 1 MET 1 -1 -1 MET MET B . n B 1 2 ASP 2 0 0 ASP ASP B . n B 1 3 GLY 3 1 1 GLY GLY B . n B 1 4 ASP 4 2 2 ASP ASP B . n B 1 5 VAL 5 3 3 VAL VAL B . n B 1 6 CYS 6 4 4 CYS CYS B . n B 1 7 GLN 7 5 5 GLN GLN B . n B 1 8 ASP 8 6 6 ASP ASP B . n B 1 9 CYS 9 7 7 CYS CYS B . n B 1 10 ILE 10 8 8 ILE ILE B . n B 1 11 GLN 11 9 9 GLN GLN B . n B 1 12 MET 12 10 10 MET MET B . n B 1 13 VAL 13 11 11 VAL VAL B . n B 1 14 THR 14 12 12 THR THR B . n B 1 15 ASP 15 13 13 ASP ASP B . n B 1 16 ILE 16 14 14 ILE ILE B . n B 1 17 GLN 17 15 15 GLN GLN B . n B 1 18 THR 18 16 16 THR THR B . n B 1 19 ALA 19 17 17 ALA ALA B . n B 1 20 VAL 20 18 18 VAL VAL B . n B 1 21 ARG 21 19 19 ARG ARG B . n B 1 22 THR 22 20 20 THR THR B . n B 1 23 ASN 23 21 21 ASN ASN B . n B 1 24 SER 24 22 22 SER SER B . n B 1 25 THR 25 23 23 THR THR B . n B 1 26 PHE 26 24 24 PHE PHE B . n B 1 27 VAL 27 25 25 VAL VAL B . n B 1 28 GLN 28 26 26 GLN GLN B . n B 1 29 ALA 29 27 27 ALA ALA B . n B 1 30 LEU 30 28 28 LEU LEU B . n B 1 31 VAL 31 29 29 VAL VAL B . n B 1 32 GLU 32 30 30 GLU GLU B . n B 1 33 HIS 33 31 31 HIS HIS B . n B 1 34 VAL 34 32 32 VAL VAL B . n B 1 35 LYS 35 33 33 LYS LYS B . n B 1 36 GLU 36 34 34 GLU GLU B . n B 1 37 GLU 37 35 35 GLU GLU B . n B 1 38 CYS 38 36 36 CYS CYS B . n B 1 39 ASP 39 37 37 ASP ASP B . n B 1 40 ARG 40 38 38 ARG ARG B . n B 1 41 LEU 41 39 39 LEU LEU B . n B 1 42 GLY 42 40 40 GLY GLY B . n B 1 43 PRO 43 41 41 PRO PRO B . n B 1 44 GLY 44 42 42 GLY GLY B . n B 1 45 MET 45 43 43 MET MET B . n B 1 46 ALA 46 44 44 ALA ALA B . n B 1 47 ASP 47 45 45 ASP ASP B . n B 1 48 ILE 48 46 46 ILE ILE B . n B 1 49 CYS 49 47 47 CYS CYS B . n B 1 50 LYS 50 48 48 LYS LYS B . n B 1 51 ASN 51 49 49 ASN ASN B . n B 1 52 TYR 52 50 50 TYR TYR B . n B 1 53 ILE 53 51 51 ILE ILE B . n B 1 54 SER 54 52 52 SER SER B . n B 1 55 GLN 55 53 53 GLN GLN B . n B 1 56 TYR 56 54 54 TYR TYR B . n B 1 57 SER 57 55 55 SER SER B . n B 1 58 GLU 58 56 56 GLU GLU B . n B 1 59 ILE 59 57 57 ILE ILE B . n B 1 60 ALA 60 58 58 ALA ALA B . n B 1 61 ILE 61 59 59 ILE ILE B . n B 1 62 GLN 62 60 60 GLN GLN B . n B 1 63 MET 63 61 61 MET MET B . n B 1 64 MET 64 62 62 MET MET B . n B 1 65 MET 65 63 63 MET MET B . n B 1 66 HIS 66 64 64 HIS HIS B . n B 1 67 MET 67 65 65 MET MET B . n B 1 68 GLN 68 66 66 GLN GLN B . n B 1 69 PRO 69 67 67 PRO PRO B . n B 1 70 LYS 70 68 68 LYS LYS B . n B 1 71 GLU 71 69 69 GLU GLU B . n B 1 72 ILE 72 70 70 ILE ILE B . n B 1 73 CYS 73 71 71 CYS CYS B . n B 1 74 ALA 74 72 72 ALA ALA B . n B 1 75 LEU 75 73 73 LEU LEU B . n B 1 76 VAL 76 74 74 VAL VAL B . n B 1 77 GLY 77 75 75 GLY GLY B . n B 1 78 PHE 78 76 76 PHE PHE B . n B 1 79 CYS 79 77 77 CYS CYS B . n B 1 80 ASP 80 78 78 ASP ASP B . n B 1 81 GLU 81 79 ? ? ? B . n C 1 1 MET 1 -1 ? ? ? C . n C 1 2 ASP 2 0 ? ? ? C . n C 1 3 GLY 3 1 1 GLY GLY C . n C 1 4 ASP 4 2 2 ASP ASP C . n C 1 5 VAL 5 3 3 VAL VAL C . n C 1 6 CYS 6 4 4 CYS CYS C . n C 1 7 GLN 7 5 5 GLN GLN C . n C 1 8 ASP 8 6 6 ASP ASP C . n C 1 9 CYS 9 7 7 CYS CYS C . n C 1 10 ILE 10 8 8 ILE ILE C . n C 1 11 GLN 11 9 9 GLN GLN C . n C 1 12 MET 12 10 10 MET MET C . n C 1 13 VAL 13 11 11 VAL VAL C . n C 1 14 THR 14 12 12 THR THR C . n C 1 15 ASP 15 13 13 ASP ASP C . n C 1 16 ILE 16 14 14 ILE ILE C . n C 1 17 GLN 17 15 15 GLN GLN C . n C 1 18 THR 18 16 16 THR THR C . n C 1 19 ALA 19 17 17 ALA ALA C . n C 1 20 VAL 20 18 18 VAL VAL C . n C 1 21 ARG 21 19 19 ARG ARG C . n C 1 22 THR 22 20 20 THR THR C . n C 1 23 ASN 23 21 21 ASN ASN C . n C 1 24 SER 24 22 22 SER SER C . n C 1 25 THR 25 23 23 THR THR C . n C 1 26 PHE 26 24 24 PHE PHE C . n C 1 27 VAL 27 25 25 VAL VAL C . n C 1 28 GLN 28 26 26 GLN GLN C . n C 1 29 ALA 29 27 27 ALA ALA C . n C 1 30 LEU 30 28 28 LEU LEU C . n C 1 31 VAL 31 29 29 VAL VAL C . n C 1 32 GLU 32 30 30 GLU GLU C . n C 1 33 HIS 33 31 31 HIS HIS C . n C 1 34 VAL 34 32 32 VAL VAL C . n C 1 35 LYS 35 33 33 LYS LYS C . n C 1 36 GLU 36 34 34 GLU GLU C . n C 1 37 GLU 37 35 35 GLU GLU C . n C 1 38 CYS 38 36 36 CYS CYS C . n C 1 39 ASP 39 37 37 ASP ASP C . n C 1 40 ARG 40 38 38 ARG ARG C . n C 1 41 LEU 41 39 39 LEU LEU C . n C 1 42 GLY 42 40 40 GLY GLY C . n C 1 43 PRO 43 41 41 PRO PRO C . n C 1 44 GLY 44 42 42 GLY GLY C . n C 1 45 MET 45 43 43 MET MET C . n C 1 46 ALA 46 44 44 ALA ALA C . n C 1 47 ASP 47 45 45 ASP ASP C . n C 1 48 ILE 48 46 46 ILE ILE C . n C 1 49 CYS 49 47 47 CYS CYS C . n C 1 50 LYS 50 48 48 LYS LYS C . n C 1 51 ASN 51 49 49 ASN ASN C . n C 1 52 TYR 52 50 50 TYR TYR C . n C 1 53 ILE 53 51 51 ILE ILE C . n C 1 54 SER 54 52 52 SER SER C . n C 1 55 GLN 55 53 53 GLN GLN C . n C 1 56 TYR 56 54 54 TYR TYR C . n C 1 57 SER 57 55 55 SER SER C . n C 1 58 GLU 58 56 56 GLU GLU C . n C 1 59 ILE 59 57 57 ILE ILE C . n C 1 60 ALA 60 58 58 ALA ALA C . n C 1 61 ILE 61 59 59 ILE ILE C . n C 1 62 GLN 62 60 60 GLN GLN C . n C 1 63 MET 63 61 61 MET MET C . n C 1 64 MET 64 62 62 MET MET C . n C 1 65 MET 65 63 63 MET MET C . n C 1 66 HIS 66 64 64 HIS HIS C . n C 1 67 MET 67 65 65 MET MET C . n C 1 68 GLN 68 66 66 GLN GLN C . n C 1 69 PRO 69 67 67 PRO PRO C . n C 1 70 LYS 70 68 68 LYS LYS C . n C 1 71 GLU 71 69 69 GLU GLU C . n C 1 72 ILE 72 70 70 ILE ILE C . n C 1 73 CYS 73 71 71 CYS CYS C . n C 1 74 ALA 74 72 72 ALA ALA C . n C 1 75 LEU 75 73 73 LEU LEU C . n C 1 76 VAL 76 74 74 VAL VAL C . n C 1 77 GLY 77 75 75 GLY GLY C . n C 1 78 PHE 78 76 76 PHE PHE C . n C 1 79 CYS 79 77 77 CYS CYS C . n C 1 80 ASP 80 78 78 ASP ASP C . n C 1 81 GLU 81 79 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 3PE 1 300 300 3PE PEH A . E 3 HOH 1 503 503 HOH HOH A . E 3 HOH 2 507 507 HOH HOH A . E 3 HOH 3 509 509 HOH HOH A . E 3 HOH 4 513 513 HOH HOH A . E 3 HOH 5 515 515 HOH HOH A . E 3 HOH 6 516 516 HOH HOH A . E 3 HOH 7 517 517 HOH HOH A . E 3 HOH 8 518 518 HOH HOH A . E 3 HOH 9 519 519 HOH HOH A . E 3 HOH 10 530 530 HOH HOH A . E 3 HOH 11 531 531 HOH HOH A . E 3 HOH 12 537 537 HOH HOH A . E 3 HOH 13 539 539 HOH HOH A . E 3 HOH 14 541 541 HOH HOH A . E 3 HOH 15 543 543 HOH HOH A . E 3 HOH 16 548 548 HOH HOH A . E 3 HOH 17 551 551 HOH HOH A . E 3 HOH 18 555 555 HOH HOH A . E 3 HOH 19 559 559 HOH HOH A . E 3 HOH 20 562 562 HOH HOH A . E 3 HOH 21 564 564 HOH HOH A . E 3 HOH 22 565 565 HOH HOH A . E 3 HOH 23 566 566 HOH HOH A . E 3 HOH 24 567 567 HOH HOH A . E 3 HOH 25 568 568 HOH HOH A . E 3 HOH 26 569 569 HOH HOH A . E 3 HOH 27 584 584 HOH HOH A . E 3 HOH 28 588 588 HOH HOH A . E 3 HOH 29 589 589 HOH HOH A . F 3 HOH 1 501 501 HOH HOH B . F 3 HOH 2 502 502 HOH HOH B . F 3 HOH 3 504 504 HOH HOH B . F 3 HOH 4 508 508 HOH HOH B . F 3 HOH 5 512 512 HOH HOH B . F 3 HOH 6 520 520 HOH HOH B . F 3 HOH 7 522 522 HOH HOH B . F 3 HOH 8 526 526 HOH HOH B . F 3 HOH 9 532 532 HOH HOH B . F 3 HOH 10 533 533 HOH HOH B . F 3 HOH 11 540 540 HOH HOH B . F 3 HOH 12 544 544 HOH HOH B . F 3 HOH 13 546 546 HOH HOH B . F 3 HOH 14 547 547 HOH HOH B . F 3 HOH 15 549 549 HOH HOH B . F 3 HOH 16 550 550 HOH HOH B . F 3 HOH 17 560 560 HOH HOH B . F 3 HOH 18 561 561 HOH HOH B . F 3 HOH 19 563 563 HOH HOH B . F 3 HOH 20 570 570 HOH HOH B . F 3 HOH 21 571 571 HOH HOH B . F 3 HOH 22 572 572 HOH HOH B . F 3 HOH 23 580 580 HOH HOH B . F 3 HOH 24 581 581 HOH HOH B . F 3 HOH 25 590 590 HOH HOH B . G 3 HOH 1 505 505 HOH HOH C . G 3 HOH 2 506 506 HOH HOH C . G 3 HOH 3 510 510 HOH HOH C . G 3 HOH 4 511 511 HOH HOH C . G 3 HOH 5 514 514 HOH HOH C . G 3 HOH 6 521 521 HOH HOH C . G 3 HOH 7 523 523 HOH HOH C . G 3 HOH 8 524 524 HOH HOH C . G 3 HOH 9 525 525 HOH HOH C . G 3 HOH 10 527 527 HOH HOH C . G 3 HOH 11 528 528 HOH HOH C . G 3 HOH 12 529 529 HOH HOH C . G 3 HOH 13 534 534 HOH HOH C . G 3 HOH 14 535 535 HOH HOH C . G 3 HOH 15 536 536 HOH HOH C . G 3 HOH 16 538 538 HOH HOH C . G 3 HOH 17 542 542 HOH HOH C . G 3 HOH 18 545 545 HOH HOH C . G 3 HOH 19 552 552 HOH HOH C . G 3 HOH 20 553 553 HOH HOH C . G 3 HOH 21 554 554 HOH HOH C . G 3 HOH 22 556 556 HOH HOH C . G 3 HOH 23 557 557 HOH HOH C . G 3 HOH 24 558 558 HOH HOH C . G 3 HOH 25 573 573 HOH HOH C . G 3 HOH 26 574 574 HOH HOH C . G 3 HOH 27 575 575 HOH HOH C . G 3 HOH 28 576 576 HOH HOH C . G 3 HOH 29 577 577 HOH HOH C . G 3 HOH 30 578 578 HOH HOH C . G 3 HOH 31 579 579 HOH HOH C . G 3 HOH 32 582 582 HOH HOH C . G 3 HOH 33 583 583 HOH HOH C . G 3 HOH 34 585 585 HOH HOH C . G 3 HOH 35 586 586 HOH HOH C . G 3 HOH 36 587 587 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E,F 2 1,2 C,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4160 ? 1 MORE -50 ? 1 'SSA (A^2)' 8840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.4553333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-07 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 2 0 2021-06-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' Advisory 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Non-polymer description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' pdbx_distant_solvent_atoms 6 5 'Structure model' pdbx_entity_nonpoly 7 5 'Structure model' pdbx_nonpoly_scheme 8 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_comp_id' 6 5 'Structure model' '_atom_site.label_comp_id' 7 5 'Structure model' '_chem_comp.formula' 8 5 'Structure model' '_chem_comp.formula_weight' 9 5 'Structure model' '_chem_comp.id' 10 5 'Structure model' '_chem_comp.mon_nstd_flag' 11 5 'Structure model' '_chem_comp.name' 12 5 'Structure model' '_chem_comp.pdbx_synonyms' 13 5 'Structure model' '_chem_comp.type' 14 5 'Structure model' '_entity.pdbx_description' 15 5 'Structure model' '_pdbx_entity_nonpoly.comp_id' 16 5 'Structure model' '_pdbx_entity_nonpoly.name' 17 5 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 18 5 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 19 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_comp_id' 20 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_comp_id' 21 5 'Structure model' '_struct_ref_seq_dif.details' 22 5 'Structure model' '_struct_site.details' 23 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 SnB phasing . ? 3 SHARP phasing . ? 4 DM 'model building' . ? 5 CNS refinement 1.1 ? 6 CCP4 'data scaling' '(SCALA)' ? 7 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 9 'BIOLOGICAL_UNIT: HOMODIMER' 10 'OTHER DETAILS: METHIONINES SUBSTITUTED WITH SELENOMETHIONINE' 600 ;HETEROGEN The PEH ligand is disordered and is probably a mixture of phosphatidylethanolamines with different acyl chain lengths. This ensemble has been modelled as a single phospholipid. As a result, the PEH atoms C2I, C3F, C3G, C3H and C3I are not present in this model. ; 5 ;WARNING 1N69: THE PEH LIGAND IS DISORDERED ; 300 ; BIOMOLECULE: 1, 2 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 3 CHAINS (A,B AND C). CHAINS A AND B FORM AN ASYMMETRIC HOMODIMER. CHAIN C FORMS A HOMODIMER WITH A CRYSTALLOGRAPHICALLY RELATED SYMMETRY MATE. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 6 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 13 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 47 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 47 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 47 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.41 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 22 ? ? -58.68 -9.80 2 1 SER B 22 ? ? -58.51 -6.81 3 1 ASP C 37 ? ? -39.07 -37.21 4 1 ARG C 38 ? ? -60.16 1.64 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 580 ? 8.80 . 2 1 O ? B HOH 581 ? 8.15 . 3 1 O ? C HOH 585 ? 8.79 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 3PE 300 ? C3F ? D 3PE 1 C3F 2 1 N 1 A 3PE 300 ? C3G ? D 3PE 1 C3G 3 1 N 1 A 3PE 300 ? C3H ? D 3PE 1 C3H 4 1 N 1 A 3PE 300 ? C3I ? D 3PE 1 C3I 5 1 N 1 A 3PE 300 ? C2I ? D 3PE 1 C2I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A ASP 0 ? A ASP 2 3 1 Y 1 A GLU 79 ? A GLU 81 4 1 Y 1 B GLU 79 ? B GLU 81 5 1 Y 1 C MET -1 ? C MET 1 6 1 Y 1 C ASP 0 ? C ASP 2 7 1 Y 1 C GLU 79 ? C GLU 81 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-Distearoyl-sn-glycerophosphoethanolamine 3PE 3 water HOH #