HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-NOV-02 1N6Z TITLE SOLUTION NMR STRUCTURE OF PROTEIN YML108W FROM SACCHAROMYCES TITLE 2 CEREVISIAE. A NOVEL MEMBER OF THE SPLIT BAB FOLD. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET YT601. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 12.3 KDA PROTEIN IN ZDS2-URA5 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: YML108W; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YML108W OR YM8339.11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL PROTEOMICS, STRUCTURAL GENOMICS, OCSP, NESG, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, PSI, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.PINEDA-LUCENA,C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (NESG) REVDAT 6 23-FEB-22 1N6Z 1 REMARK REVDAT 5 24-FEB-09 1N6Z 1 VERSN REVDAT 4 25-JAN-05 1N6Z 1 AUTHOR KEYWDS REVDAT 3 12-OCT-04 1N6Z 1 KEYWDS JRNL REMARK MASTER REVDAT 2 13-MAY-03 1N6Z 1 TITLE REVDAT 1 06-MAY-03 1N6Z 0 JRNL AUTH A.PINEDA-LUCENA,J.C.C.LIAO,J.R.CORT,A.YEE,M.A.KENNEDY, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL A NOVEL MEMBER OF THE SPLIT BETA-ALPHA-BETA FOLD: SOLUTION JRNL TITL 2 STRUCTURE OF THE HYPOTHETICAL PROTEIN YML108W FROM JRNL TITL 3 SACCHAROMYCES CEREVISIAE. ONTARIO CENTRE FOR STRUCTURAL JRNL TITL 4 PROTEOMICS TARGET (YST0204_1_105); NORTHEAST STRUCTURAL JRNL TITL 5 GENOMICS TARGET (YT601). JRNL REF PROTEIN SCI. V. 12 1136 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12717036 JRNL DOI 10.1110/PS.0240903 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, DYANA 1.5 REMARK 3 AUTHORS : DELAGLIO ET AL. (NMRPIPE), GUNTERT ET AL. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N6Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017596. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 900E-3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM, U-15N,13C 25 MM SODIUM REMARK 210 PHOSPHATE (PH=6.5), 450 MM NACL, REMARK 210 1 MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, XEASY 1.3.14, CYANA REMARK 210 1.0.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUECLEAR NMR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 77 O LEU A 81 1.53 REMARK 500 O SER A 77 H GLY A 80 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 154.23 -49.18 REMARK 500 1 ASN A 5 103.29 -164.35 REMARK 500 1 ASN A 20 -158.47 -63.77 REMARK 500 1 ASP A 23 -71.30 -144.98 REMARK 500 1 GLU A 24 100.22 -161.20 REMARK 500 1 LYS A 28 74.41 -65.31 REMARK 500 1 PRO A 44 42.89 -75.00 REMARK 500 1 ASP A 48 40.95 -108.48 REMARK 500 1 GLU A 49 35.47 -151.61 REMARK 500 2 SER A 2 42.88 165.37 REMARK 500 2 LYS A 3 89.81 73.57 REMARK 500 2 SER A 4 -174.56 -179.30 REMARK 500 2 LYS A 18 35.08 -172.37 REMARK 500 2 ASN A 20 -155.76 -64.93 REMARK 500 2 ASP A 23 -65.90 -147.12 REMARK 500 2 PHE A 26 47.83 178.64 REMARK 500 2 HIS A 35 78.97 39.09 REMARK 500 2 PRO A 44 41.53 -74.99 REMARK 500 2 GLU A 49 35.82 -155.42 REMARK 500 3 LYS A 3 166.06 68.40 REMARK 500 3 ASN A 5 108.29 -161.40 REMARK 500 3 THR A 17 -174.77 46.79 REMARK 500 3 ASN A 20 -152.78 -65.22 REMARK 500 3 ASP A 23 -66.56 -150.67 REMARK 500 3 PHE A 26 79.21 179.25 REMARK 500 3 HIS A 35 71.60 46.56 REMARK 500 3 PRO A 44 41.93 -75.04 REMARK 500 3 GLU A 49 38.50 -162.96 REMARK 500 4 SER A 2 -52.76 -129.61 REMARK 500 4 LYS A 3 50.52 -152.75 REMARK 500 4 THR A 17 -174.79 47.40 REMARK 500 4 ASN A 20 -152.27 -64.89 REMARK 500 4 ASP A 23 -65.75 -151.63 REMARK 500 4 PHE A 26 61.80 -168.82 REMARK 500 4 HIS A 35 71.27 44.58 REMARK 500 4 PRO A 44 40.51 -74.95 REMARK 500 4 GLU A 49 36.06 -153.01 REMARK 500 5 SER A 2 35.34 39.17 REMARK 500 5 SER A 4 -55.88 76.38 REMARK 500 5 ASN A 5 122.41 174.07 REMARK 500 5 LYS A 18 74.88 -170.16 REMARK 500 5 ASN A 20 -149.98 -65.10 REMARK 500 5 ASP A 23 -70.77 -153.08 REMARK 500 5 PHE A 26 76.97 -178.60 REMARK 500 5 HIS A 35 74.89 45.86 REMARK 500 5 PRO A 44 41.47 -74.93 REMARK 500 5 GLU A 49 32.62 -159.35 REMARK 500 6 SER A 2 -32.34 157.65 REMARK 500 6 LYS A 3 -70.34 -40.11 REMARK 500 6 ASN A 5 97.11 79.41 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5568 RELATED DB: BMRB REMARK 900 RELATED ID: YT601 RELATED DB: TARGETDB REMARK 999 REMARK 999 THE PROTEIN THAT WAS STRUCTURALLY DETERMINED REMARK 999 ALSO CONTAINS A HIS TAG PRIOR TO REMARK 999 THE SEQUENCE LISTED IN THE SEQRES. REMARK 999 THE HIS TAG SEQUENCE IS MGSSHHHHHHSSGLVPRGSH. REMARK 999 THESE HIS TAG RESIDUES WERE MISSING IN THE REMARK 999 ELECTRON DENSITY. DBREF 1N6Z A 1 105 UNP Q03759 YMK8_YEAST 1 105 SEQRES 1 A 105 MET SER LYS SER ASN THR TYR ARG MET LEU VAL LEU LEU SEQRES 2 A 105 GLU ASP ASP THR LYS ILE ASN LYS GLU ASP GLU LYS PHE SEQRES 3 A 105 LEU LYS GLY LYS PRO GLY LYS MET HIS GLU PHE VAL ASP SEQRES 4 A 105 GLU LEU ILE LEU PRO PHE ASN VAL ASP GLU LEU ASP GLU SEQRES 5 A 105 LEU ASN THR TRP PHE ASP LYS PHE ASP ALA GLU ILE CYS SEQRES 6 A 105 ILE PRO ASN GLU GLY HIS ILE LYS TYR GLU ILE SER SER SEQRES 7 A 105 ASP GLY LEU ILE VAL LEU MET LEU ASP LYS GLU ILE GLU SEQRES 8 A 105 GLU VAL VAL GLU LYS VAL LYS LYS PHE VAL GLU GLU ASN SEQRES 9 A 105 ASN HELIX 1 1 GLU A 49 ILE A 66 1 18 HELIX 2 2 ILE A 90 ASN A 105 1 16 SHEET 1 A 4 PHE A 37 LEU A 43 0 SHEET 2 A 4 TYR A 7 LEU A 13 -1 N MET A 9 O LEU A 41 SHEET 3 A 4 LEU A 81 LEU A 86 1 O LEU A 84 N LEU A 10 SHEET 4 A 4 ILE A 72 SER A 77 -1 N SER A 77 O LEU A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1