HEADER TRANSFERASE 12-NOV-02 1N71 TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 6'-ACETYLTRANSFERASE TYPE II IN TITLE 2 COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AAC(6')-II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PPLAAC-1 KEYWDS AMINOGLYCOSIDE 6'-N-ACETYLTRANSFERASE, ANTIBIOTIC RESISTANCE, KEYWDS 2 COENZYME A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.L.BURK,N.GHUMAN,L.E.WYBENGA-GROOT,A.M.BERGHUIS REVDAT 3 14-FEB-24 1N71 1 REMARK REVDAT 2 24-FEB-09 1N71 1 VERSN REVDAT 1 18-MAR-03 1N71 0 JRNL AUTH D.L.BURK,N.GHUMAN,L.E.WYBENGA-GROOT,A.M.BERGHUIS JRNL TITL X-RAY STRUCTURE OF THE AAC(6')-II ANTIBIOTIC RESISTANCE JRNL TITL 2 ENZYME AT 1.8 A RESOLUTION; EXAMINATION OF OLIGOMERIC JRNL TITL 3 ARRANGEMENTS IN GNAT SUPERFAMILY MEMBERS JRNL REF PROTEIN SCI. V. 12 426 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12592013 JRNL DOI 10.1110/PS.0233503 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.E.WYBENGA-GROOT,K.DRAKER,G.D.WRIGHT,A.M.BERGHUIS REMARK 1 TITL CRYSTAL STRUCTURE OF AN AMINOGLYCOSIDE REMARK 1 TITL 2 6'-N-ACETYLTRANSFERASE: DEFINING THE GCN5-RELATED REMARK 1 TITL 3 N-ACETYLTRANSFERASE SUPERFAMILY FOLD REMARK 1 REF STRUCTURE V. 7 497 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(99)80066-5 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 62541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6300 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6515 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 746 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 217 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.10000 REMARK 3 B22 (A**2) : -4.98000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 45.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : COA.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : COA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 27.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1B87 WITH COFACTOR AND WATER REMOVED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.07500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.07500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS TWO BIOLOGICAL UNITS (DIMERS) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -76.92000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 180 REMARK 465 ASP C 180 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 27 CG CD OE1 OE2 REMARK 480 ASP A 31 CG OD1 OD2 REMARK 480 SER A 32 OG REMARK 480 GLU A 35 CG CD OE1 OE2 REMARK 480 GLU A 36 CD OE1 OE2 REMARK 480 GLU A 44 CD OE1 OE2 REMARK 480 GLN A 53 CB CG CD OE1 NE2 REMARK 480 ASP A 54 CG OD1 OD2 REMARK 480 LYS A 97 CG CD CE NZ REMARK 480 ASP A 115 CG OD1 OD2 REMARK 480 ARG A 140 CZ NH1 NH2 REMARK 480 GLU B 27 CG CD OE1 OE2 REMARK 480 ASP B 31 CG OD1 OD2 REMARK 480 GLU B 35 CG CD OE1 OE2 REMARK 480 GLN B 53 CB CG CD OE1 NE2 REMARK 480 ASP B 54 CG OD1 OD2 REMARK 480 GLU B 141 CD OE1 OE2 REMARK 480 ASP C 19 CG OD1 OD2 REMARK 480 ASP C 31 CG OD1 OD2 REMARK 480 GLU C 35 CG CD OE1 OE2 REMARK 480 ASP C 131 OD1 OD2 REMARK 480 ARG C 140 CZ NH1 NH2 REMARK 480 GLU C 141 CD OE1 OE2 REMARK 480 GLU D 27 CG CD OE1 OE2 REMARK 480 GLU D 28 CG CD OE1 OE2 REMARK 480 ASP D 31 CG OD1 OD2 REMARK 480 GLU D 35 CG CD OE1 OE2 REMARK 480 GLU D 36 CD OE1 OE2 REMARK 480 GLU D 44 CD OE1 OE2 REMARK 480 GLN D 53 CB CG CD OE1 NE2 REMARK 480 LYS D 97 CE NZ REMARK 480 ASP D 115 CG OD1 OD2 REMARK 480 GLU D 127 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 -71.59 -81.66 REMARK 500 SER A 32 29.18 -69.03 REMARK 500 GLN A 53 -91.07 66.28 REMARK 500 HIS A 74 123.22 -174.30 REMARK 500 SER B 32 42.23 -84.66 REMARK 500 GLN B 53 -32.02 56.70 REMARK 500 ASP B 54 -16.83 -176.75 REMARK 500 HIS B 74 124.70 -170.47 REMARK 500 GLN C 53 -100.71 69.29 REMARK 500 HIS C 74 122.83 -170.07 REMARK 500 GLN D 53 -88.01 72.74 REMARK 500 HIS D 74 124.94 -174.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA D 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B87 RELATED DB: PDB REMARK 900 AMINOGLYCOSIDE 6'-ACETYLTRANSFERASE TYPE II IN COMPLEX WITH ACETYL REMARK 900 COENZYME A REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR STATES THAT THERE IS AN ERROR IN THE REMARK 999 SEQUENCE DATABASE. DBREF 1N71 A 1 180 UNP Q47764 Q47764_ENTFC 1 180 DBREF 1N71 B 1 180 UNP Q47764 Q47764_ENTFC 1 180 DBREF 1N71 C 1 180 UNP Q47764 Q47764_ENTFC 1 180 DBREF 1N71 D 1 180 UNP Q47764 Q47764_ENTFC 1 180 SEQADV 1N71 GLU A 127 UNP Q47764 VAL 127 SEE REMARK 999 SEQADV 1N71 GLU B 127 UNP Q47764 VAL 127 SEE REMARK 999 SEQADV 1N71 GLU C 127 UNP Q47764 VAL 127 SEE REMARK 999 SEQADV 1N71 GLU D 127 UNP Q47764 VAL 127 SEE REMARK 999 SEQRES 1 A 180 MET ILE ILE SER GLU PHE ASP ARG ASN ASN PRO VAL LEU SEQRES 2 A 180 LYS ASP GLN LEU SER ASP LEU LEU ARG LEU THR TRP PRO SEQRES 3 A 180 GLU GLU TYR GLY ASP SER SER ALA GLU GLU VAL GLU GLU SEQRES 4 A 180 MET MET ASN PRO GLU ARG ILE ALA VAL ALA ALA VAL ASP SEQRES 5 A 180 GLN ASP GLU LEU VAL GLY PHE ILE GLY ALA ILE PRO GLN SEQRES 6 A 180 TYR GLY ILE THR GLY TRP GLU LEU HIS PRO LEU VAL VAL SEQRES 7 A 180 GLU SER SER ARG ARG LYS ASN GLN ILE GLY THR ARG LEU SEQRES 8 A 180 VAL ASN TYR LEU GLU LYS GLU VAL ALA SER ARG GLY GLY SEQRES 9 A 180 ILE THR ILE TYR LEU GLY THR ASP ASP LEU ASP HIS GLY SEQRES 10 A 180 THR THR LEU SER GLN THR ASP LEU TYR GLU HIS THR PHE SEQRES 11 A 180 ASP LYS VAL ALA SER ILE GLN ASN LEU ARG GLU HIS PRO SEQRES 12 A 180 TYR GLU PHE TYR GLU LYS LEU GLY TYR LYS ILE VAL GLY SEQRES 13 A 180 VAL LEU PRO ASN ALA ASN GLY TRP ASP LYS PRO ASP ILE SEQRES 14 A 180 TRP MET ALA LYS THR ILE ILE PRO ARG PRO ASP SEQRES 1 B 180 MET ILE ILE SER GLU PHE ASP ARG ASN ASN PRO VAL LEU SEQRES 2 B 180 LYS ASP GLN LEU SER ASP LEU LEU ARG LEU THR TRP PRO SEQRES 3 B 180 GLU GLU TYR GLY ASP SER SER ALA GLU GLU VAL GLU GLU SEQRES 4 B 180 MET MET ASN PRO GLU ARG ILE ALA VAL ALA ALA VAL ASP SEQRES 5 B 180 GLN ASP GLU LEU VAL GLY PHE ILE GLY ALA ILE PRO GLN SEQRES 6 B 180 TYR GLY ILE THR GLY TRP GLU LEU HIS PRO LEU VAL VAL SEQRES 7 B 180 GLU SER SER ARG ARG LYS ASN GLN ILE GLY THR ARG LEU SEQRES 8 B 180 VAL ASN TYR LEU GLU LYS GLU VAL ALA SER ARG GLY GLY SEQRES 9 B 180 ILE THR ILE TYR LEU GLY THR ASP ASP LEU ASP HIS GLY SEQRES 10 B 180 THR THR LEU SER GLN THR ASP LEU TYR GLU HIS THR PHE SEQRES 11 B 180 ASP LYS VAL ALA SER ILE GLN ASN LEU ARG GLU HIS PRO SEQRES 12 B 180 TYR GLU PHE TYR GLU LYS LEU GLY TYR LYS ILE VAL GLY SEQRES 13 B 180 VAL LEU PRO ASN ALA ASN GLY TRP ASP LYS PRO ASP ILE SEQRES 14 B 180 TRP MET ALA LYS THR ILE ILE PRO ARG PRO ASP SEQRES 1 C 180 MET ILE ILE SER GLU PHE ASP ARG ASN ASN PRO VAL LEU SEQRES 2 C 180 LYS ASP GLN LEU SER ASP LEU LEU ARG LEU THR TRP PRO SEQRES 3 C 180 GLU GLU TYR GLY ASP SER SER ALA GLU GLU VAL GLU GLU SEQRES 4 C 180 MET MET ASN PRO GLU ARG ILE ALA VAL ALA ALA VAL ASP SEQRES 5 C 180 GLN ASP GLU LEU VAL GLY PHE ILE GLY ALA ILE PRO GLN SEQRES 6 C 180 TYR GLY ILE THR GLY TRP GLU LEU HIS PRO LEU VAL VAL SEQRES 7 C 180 GLU SER SER ARG ARG LYS ASN GLN ILE GLY THR ARG LEU SEQRES 8 C 180 VAL ASN TYR LEU GLU LYS GLU VAL ALA SER ARG GLY GLY SEQRES 9 C 180 ILE THR ILE TYR LEU GLY THR ASP ASP LEU ASP HIS GLY SEQRES 10 C 180 THR THR LEU SER GLN THR ASP LEU TYR GLU HIS THR PHE SEQRES 11 C 180 ASP LYS VAL ALA SER ILE GLN ASN LEU ARG GLU HIS PRO SEQRES 12 C 180 TYR GLU PHE TYR GLU LYS LEU GLY TYR LYS ILE VAL GLY SEQRES 13 C 180 VAL LEU PRO ASN ALA ASN GLY TRP ASP LYS PRO ASP ILE SEQRES 14 C 180 TRP MET ALA LYS THR ILE ILE PRO ARG PRO ASP SEQRES 1 D 180 MET ILE ILE SER GLU PHE ASP ARG ASN ASN PRO VAL LEU SEQRES 2 D 180 LYS ASP GLN LEU SER ASP LEU LEU ARG LEU THR TRP PRO SEQRES 3 D 180 GLU GLU TYR GLY ASP SER SER ALA GLU GLU VAL GLU GLU SEQRES 4 D 180 MET MET ASN PRO GLU ARG ILE ALA VAL ALA ALA VAL ASP SEQRES 5 D 180 GLN ASP GLU LEU VAL GLY PHE ILE GLY ALA ILE PRO GLN SEQRES 6 D 180 TYR GLY ILE THR GLY TRP GLU LEU HIS PRO LEU VAL VAL SEQRES 7 D 180 GLU SER SER ARG ARG LYS ASN GLN ILE GLY THR ARG LEU SEQRES 8 D 180 VAL ASN TYR LEU GLU LYS GLU VAL ALA SER ARG GLY GLY SEQRES 9 D 180 ILE THR ILE TYR LEU GLY THR ASP ASP LEU ASP HIS GLY SEQRES 10 D 180 THR THR LEU SER GLN THR ASP LEU TYR GLU HIS THR PHE SEQRES 11 D 180 ASP LYS VAL ALA SER ILE GLN ASN LEU ARG GLU HIS PRO SEQRES 12 D 180 TYR GLU PHE TYR GLU LYS LEU GLY TYR LYS ILE VAL GLY SEQRES 13 D 180 VAL LEU PRO ASN ALA ASN GLY TRP ASP LYS PRO ASP ILE SEQRES 14 D 180 TRP MET ALA LYS THR ILE ILE PRO ARG PRO ASP HET COA A 601 48 HET COA B 602 48 HET SO4 C 900 5 HET SO4 C 901 5 HET SO4 C 902 5 HET SO4 C 904 5 HET COA C 603 48 HET SO4 D 903 5 HET COA D 604 48 HETNAM COA COENZYME A HETNAM SO4 SULFATE ION FORMUL 5 COA 4(C21 H36 N7 O16 P3 S) FORMUL 7 SO4 5(O4 S 2-) FORMUL 14 HOH *504(H2 O) HELIX 1 1 ASN A 10 TRP A 25 1 16 HELIX 2 2 SER A 32 MET A 41 1 10 HELIX 3 3 GLN A 86 ARG A 102 1 17 HELIX 4 4 HIS A 128 SER A 135 1 8 HELIX 5 5 PRO A 143 LEU A 150 1 8 HELIX 6 6 ASN B 10 TRP B 25 1 16 HELIX 7 7 SER B 32 MET B 40 1 9 HELIX 8 8 SER B 80 ARG B 83 5 4 HELIX 9 9 GLN B 86 ARG B 102 1 17 HELIX 10 10 HIS B 128 SER B 135 1 8 HELIX 11 11 PRO B 143 LYS B 149 1 7 HELIX 12 12 ASN C 10 TRP C 25 1 16 HELIX 13 13 SER C 32 MET C 41 1 10 HELIX 14 14 SER C 80 ARG C 83 5 4 HELIX 15 15 GLN C 86 ARG C 102 1 17 HELIX 16 16 HIS C 128 SER C 135 1 8 HELIX 17 17 PRO C 143 LEU C 150 1 8 HELIX 18 18 ASN D 10 TRP D 25 1 16 HELIX 19 19 SER D 32 MET D 41 1 10 HELIX 20 20 SER D 80 ARG D 83 5 4 HELIX 21 21 GLN D 86 ARG D 102 1 17 HELIX 22 22 HIS D 128 SER D 135 1 8 HELIX 23 23 PRO D 143 LEU D 150 1 8 SHEET 1 A 7 ILE A 2 GLU A 5 0 SHEET 2 A 7 ILE A 46 ASP A 52 -1 O ALA A 49 N SER A 4 SHEET 3 A 7 GLU A 55 TYR A 66 -1 O GLU A 55 N ASP A 52 SHEET 4 A 7 GLY A 70 VAL A 78 -1 O GLU A 72 N ILE A 63 SHEET 5 A 7 THR A 106 ASP A 112 1 O THR A 106 N TRP A 71 SHEET 6 A 7 ASP A 168 THR A 174 -1 O ILE A 169 N THR A 111 SHEET 7 A 7 LYS A 153 LEU A 158 -1 N GLY A 156 O TRP A 170 SHEET 1 B 7 ILE B 2 GLU B 5 0 SHEET 2 B 7 ILE B 46 ASP B 52 -1 O ALA B 49 N SER B 4 SHEET 3 B 7 GLU B 55 TYR B 66 -1 O ILE B 60 N VAL B 48 SHEET 4 B 7 GLY B 70 VAL B 78 -1 O GLU B 72 N ILE B 63 SHEET 5 B 7 THR B 106 ASP B 112 1 O THR B 106 N TRP B 71 SHEET 6 B 7 ASP B 168 THR B 174 -1 O ILE B 169 N THR B 111 SHEET 7 B 7 LYS B 153 LEU B 158 -1 N LEU B 158 O ASP B 168 SHEET 1 C 7 ILE C 2 GLU C 5 0 SHEET 2 C 7 ILE C 46 ASP C 52 -1 O VAL C 51 N ILE C 2 SHEET 3 C 7 GLU C 55 TYR C 66 -1 O GLU C 55 N ASP C 52 SHEET 4 C 7 GLY C 70 VAL C 78 -1 O GLU C 72 N ILE C 63 SHEET 5 C 7 THR C 106 ASP C 112 1 O THR C 106 N TRP C 71 SHEET 6 C 7 ASP C 168 THR C 174 -1 O LYS C 173 N ILE C 107 SHEET 7 C 7 LYS C 153 LEU C 158 -1 N LEU C 158 O ASP C 168 SHEET 1 D 7 ILE D 2 GLU D 5 0 SHEET 2 D 7 ILE D 46 ASP D 52 -1 O VAL D 51 N ILE D 2 SHEET 3 D 7 GLU D 55 TYR D 66 -1 O GLU D 55 N ASP D 52 SHEET 4 D 7 GLY D 70 VAL D 78 -1 O GLU D 72 N ILE D 63 SHEET 5 D 7 THR D 106 ASP D 112 1 O THR D 106 N TRP D 71 SHEET 6 D 7 ASP D 168 THR D 174 -1 O MET D 171 N LEU D 109 SHEET 7 D 7 LYS D 153 LEU D 158 -1 N GLY D 156 O TRP D 170 CISPEP 1 HIS A 74 PRO A 75 0 -0.29 CISPEP 2 HIS B 74 PRO B 75 0 -0.48 CISPEP 3 HIS C 74 PRO C 75 0 -0.34 CISPEP 4 HIS D 74 PRO D 75 0 -0.16 SITE 1 AC1 7 LYS C 153 HOH C 909 HIS D 128 THR D 129 SITE 2 AC1 7 HOH D 924 HOH D 934 HOH D 999 SITE 1 AC2 10 THR A 123 LYS A 132 PRO A 177 HOH A 635 SITE 2 AC2 10 HOH A 665 HIS C 116 GLN C 122 HOH C1027 SITE 3 AC2 10 HOH C1031 HOH C1041 SITE 1 AC3 7 TYR C 126 GLU C 127 HIS C 128 THR C 129 SITE 2 AC3 7 HOH C 919 HOH C1023 LYS D 153 SITE 1 AC4 8 HIS B 116 GLN B 122 THR D 123 LYS D 132 SITE 2 AC4 8 HOH D 942 HOH D 951 HOH D 991 HOH D1001 SITE 1 AC5 4 ARG C 90 HOH C 942 HOH C 995 HOH C1019 SITE 1 AC6 26 TRP A 25 LEU A 76 VAL A 78 ARG A 83 SITE 2 AC6 26 LYS A 84 ASN A 85 GLN A 86 ILE A 87 SITE 3 AC6 26 GLY A 88 THR A 89 GLY A 110 THR A 111 SITE 4 AC6 26 ASN A 138 GLU A 141 HIS A 142 PRO A 143 SITE 5 AC6 26 GLU A 145 PHE A 146 TYR A 147 LYS A 149 SITE 6 AC6 26 HOH A 607 HOH A 649 HOH A 661 HOH A 663 SITE 7 AC6 26 HOH A 677 HOH A 684 SITE 1 AC7 21 THR B 24 TRP B 25 LEU B 76 VAL B 77 SITE 2 AC7 21 VAL B 78 ARG B 83 LYS B 84 ASN B 85 SITE 3 AC7 21 GLN B 86 ILE B 87 GLY B 88 THR B 89 SITE 4 AC7 21 THR B 111 GLU B 141 HIS B 142 PHE B 146 SITE 5 AC7 21 TYR B 147 LYS B 149 HOH B 640 HOH B 674 SITE 6 AC7 21 HOH B 678 SITE 1 AC8 24 HOH B 675 THR C 24 TRP C 25 LEU C 76 SITE 2 AC8 24 VAL C 77 VAL C 78 ARG C 83 LYS C 84 SITE 3 AC8 24 ASN C 85 GLN C 86 ILE C 87 GLY C 88 SITE 4 AC8 24 THR C 89 THR C 111 GLU C 141 HIS C 142 SITE 5 AC8 24 PHE C 146 TYR C 147 LYS C 149 HOH C 921 SITE 6 AC8 24 HOH C 986 HOH C1015 HOH C1016 HOH C1032 SITE 1 AC9 22 TRP D 25 LEU D 76 VAL D 78 ARG D 83 SITE 2 AC9 22 LYS D 84 ASN D 85 GLN D 86 ILE D 87 SITE 3 AC9 22 GLY D 88 THR D 89 GLY D 110 GLU D 141 SITE 4 AC9 22 HIS D 142 PRO D 143 GLU D 145 PHE D 146 SITE 5 AC9 22 TYR D 147 LYS D 149 HOH D 907 HOH D 970 SITE 6 AC9 22 HOH D 973 HOH D 990 CRYST1 73.190 76.920 130.150 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007683 0.00000