HEADER LIPID TRANSPORT 13-NOV-02 1N7D TITLE EXTRACELLULAR DOMAIN OF THE LDL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 1-699; COMPND 5 SYNONYM: LDL RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LDLR; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS LDL-RECEPTOR, FAMILIAL HYPERCHOLESTEROLEMIA, LDL, CHOLESTEROL KEYWDS 2 METABOLISM, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.RUDENKO,L.HENRY,K.HENDERSON,K.ICHTCHENKO,M.S.BROWN,J.L.GOLDSTEIN, AUTHOR 2 J.DEISENHOFER REVDAT 5 27-OCT-21 1N7D 1 SEQADV HETSYN REVDAT 4 29-JUL-20 1N7D 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1N7D 1 VERSN REVDAT 2 24-FEB-09 1N7D 1 VERSN REVDAT 1 21-JAN-03 1N7D 0 JRNL AUTH G.RUDENKO,L.HENRY,K.HENDERSON,K.ICHTCHENKO,M.S.BROWN, JRNL AUTH 2 J.L.GOLDSTEIN,J.DEISENHOFER JRNL TITL STRUCTURE OF THE LDL RECEPTOR EXTRACELLULAR DOMAIN AT JRNL TITL 2 ENDOSOMAL PH JRNL REF SCIENCE V. 298 2353 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12459547 JRNL DOI 10.1126/SCIENCE.1078124 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 16008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.381 REMARK 3 FREE R VALUE : 0.382 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 36.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 757 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 68 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.062 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 254 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 124.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.49000 REMARK 3 B22 (A**2) : 20.49000 REMARK 3 B33 (A**2) : -40.98000 REMARK 3 B12 (A**2) : 9.97000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 1.10 REMARK 3 ESD FROM SIGMAA (A) : 1.05 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 1.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.031 REMARK 3 BOND ANGLES (DEGREES) : 4.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.520 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.16 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : KEG_18JAN02.PAR REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : KEG_12JUL02.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE SUGARS HAVE NOT BEEN REFINED, JUST MANUALLY PLACED REMARK 3 IN THE DENSITY. THE EXACT IDENTITY OF THE SUGARS REMARK 3 IN THESE N-LINKED GLYCOSYLATION REMARK 3 SITES IS NOT KNOWN. REMARK 3 AT THIS RESOLUTION POSITIONAL REMARK 3 REFINEMENT IS OF LIMITED USE. REMARK 3 HARMONIC RESTRAINTS WERE USED REMARK 3 ON MOST CORE RESIDUES. NO SIMULATED REMARK 3 ANNEALING WAS USED. REMARK 3 REMARK 3 REMARK 3 THE RESOLUTION OF THE MAD DATA USED IN THE STRUCTURE DETERMINATION REMARK 3 IS 3.7 ANG AND THE B-FACTORS WERE HIGH. REMARK 3 THIS MEANS THAT THE POSITIONS OF THE SIDE CHAINS REMARK 3 ARE NOT WELL DETERMINED IN THE MODEL. REMARK 3 THE AUTHORS URGE REMARK 3 USERS TO EXERCIZE CAUTION AND RESTRAINT INTERPRETING THIS MODEL. REMARK 3 THE AUTHORS ARE AVAILABLE FOR QUESTIONS. REMARK 3 REMARK 3 REMARK 3 THE CLUSTERS WERE INCLUDED IN THE POSITIONAL REFINEMENT REMARK 3 (REGULARIZATION OF THE MODEL). REMARK 3 THE CARBOHYDRATES WERE NOT INCLUDED IN THE POSITIONAL REMARK 3 REFINEMENT (REGULARIZATION OF THE MODEL) BUT FITTED MANUALLY. REMARK 3 THE CARBOHYDRATES WERE MODELLED AS THE N-LINKED HIGH MANNOSE TYPE. REMARK 4 REMARK 4 1N7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-01; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 110; NULL; NULL REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 8 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS; APS REMARK 200 BEAMLINE : 5.0.2; 8.2.1; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.21363, 1.21423, 1.10696, REMARK 200 1.23985; NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM REMARK 200 210; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17303 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRIES: 1AJJ, 1D2J, 1I0U, 1IJQ, 1FX5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETATE BUFFER PH 5.3, 1,2-HEXANEDIOL, REMARK 280 0.5 MM CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.39533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.79067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.79067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.39533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS BELIEVE THE BIOLOGICAL UNIT IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 W1 KEG A6003 LIES ON A SPECIAL POSITION. REMARK 375 W2 KEG A6003 LIES ON A SPECIAL POSITION. REMARK 375 P1 KEG A6003 LIES ON A SPECIAL POSITION. REMARK 375 O1 KEG A6003 LIES ON A SPECIAL POSITION. REMARK 375 O2 KEG A6003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 VAL A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 CYS A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 PHE A 11 REMARK 465 GLN A 12 REMARK 465 CYS A 13 REMARK 465 GLN A 14 REMARK 465 ASP A 15 REMARK 465 GLY A 16 REMARK 465 LYS A 17 REMARK 465 CYS A 18 REMARK 465 ILE A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 LYS A 22 REMARK 465 TRP A 23 REMARK 465 VAL A 24 REMARK 465 CYS A 25 REMARK 465 ASP A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 GLU A 30 REMARK 465 CYS A 31 REMARK 465 GLN A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 GLN A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 CYS A 42 REMARK 465 LEU A 43 REMARK 465 ARG A 57 REMARK 465 VAL A 58 REMARK 465 ASP A 75 REMARK 465 LYS A 99 REMARK 465 CYS A 100 REMARK 465 ILE A 101 REMARK 465 SER A 102 REMARK 465 VAL A 388 REMARK 465 VAL A 441 REMARK 465 GLN A 453 REMARK 465 ALA A 454 REMARK 465 ALA A 694 REMARK 465 GLU A 695 REMARK 465 ALA A 696 REMARK 465 ALA A 697 REMARK 465 VAL A 698 REMARK 465 ALA A 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 44 OG REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 GLN A 71 CG CD OE1 NE2 REMARK 470 VAL A 72 CG1 CG2 REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 SER A 89 OG REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 181 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 184 CG CD1 CD2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 284 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 284 CZ3 CH2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 386 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 399 CB OG1 CG2 REMARK 470 SER A 400 CB OG REMARK 470 LEU A 401 CB CG CD1 CD2 REMARK 470 ILE A 402 CB CG1 CG2 CD1 REMARK 470 LEU A 405 CG CD1 CD2 REMARK 470 ARG A 406 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 419 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 428 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 439 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 LYS A 520 CG CD CE NZ REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 LEU A 554 CG CD1 CD2 REMARK 470 TYR A 555 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 GLU A 579 CG CD OE1 OE2 REMARK 470 ARG A 583 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 626 CG CD1 CD2 REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 ARG A 685 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASN A 251 N2 NAG C 1 1.75 REMARK 500 CB ASN A 251 N2 NAG C 1 1.78 REMARK 500 O CYS A 152 N ASP A 154 1.88 REMARK 500 O CYS A 134 N SER A 136 1.90 REMARK 500 O ASP A 73 OD1 ASP A 79 1.93 REMARK 500 OD1 ASN A 527 OG1 THR A 674 1.95 REMARK 500 N LEU A 554 O ILE A 567 1.95 REMARK 500 O PRO A 141 N LEU A 143 1.96 REMARK 500 ND2 ASN A 543 OG SER A 559 1.96 REMARK 500 O GLN A 133 C8 NAG B 1 1.96 REMARK 500 ND2 ASN A 135 O5 NAG B 1 1.98 REMARK 500 CB ASN A 251 C8 NAG C 1 2.00 REMARK 500 OH TYR A 468 CD2 LEU A 526 2.01 REMARK 500 O SER A 192 N ARG A 194 2.02 REMARK 500 OH TYR A 468 CD1 LEU A 526 2.02 REMARK 500 NH2 ARG A 499 O GLU A 629 2.04 REMARK 500 OD2 ASP A 451 NH1 ARG A 487 2.04 REMARK 500 O LEU A 613 N GLY A 615 2.04 REMARK 500 CG ASN A 135 C1 NAG B 1 2.04 REMARK 500 O LYS A 48 N GLY A 50 2.05 REMARK 500 O PHE A 105 N CYS A 107 2.06 REMARK 500 O CYS A 176 N ALA A 178 2.07 REMARK 500 CA ASN A 251 C8 NAG C 1 2.07 REMARK 500 O GLN A 427 N MET A 429 2.09 REMARK 500 N LYS A 390 O THR A 399 2.09 REMARK 500 O LEU A 325 CB CYS A 331 2.10 REMARK 500 CB ASN A 611 O GLY A 615 2.10 REMARK 500 CB ASN A 251 C7 NAG C 1 2.11 REMARK 500 O GLN A 71 OE1 GLU A 80 2.12 REMARK 500 O HIS A 464 N ASN A 466 2.12 REMARK 500 OD1 ASP A 147 OD2 ASP A 157 2.13 REMARK 500 O ASN A 604 N ALA A 606 2.13 REMARK 500 N ASP A 280 OD2 ASP A 286 2.13 REMARK 500 O SER A 566 N LYS A 575 2.13 REMARK 500 O ASP A 147 OE2 GLU A 158 2.14 REMARK 500 OD1 ASP A 149 NE2 HIS A 586 2.15 REMARK 500 O ASP A 206 N GLU A 208 2.16 REMARK 500 O TRP A 66 O ASP A 79 2.16 REMARK 500 O PHE A 261 O GLU A 267 2.16 REMARK 500 O HIS A 507 N PHE A 509 2.17 REMARK 500 O ASN A 300 N GLY A 303 2.17 REMARK 500 O ILE A 467 CA VAL A 479 2.17 REMARK 500 O GLY A 293 OE2 GLU A 296 2.18 REMARK 500 SG CYS A 152 N GLY A 155 2.18 REMARK 500 C CYS A 337 OG1 THR A 342 2.19 REMARK 500 O LEU A 554 CA SER A 566 2.19 REMARK 500 O ASP A 115 N SER A 117 2.19 REMARK 500 O LYS A 262 N HIS A 264 2.19 REMARK 500 CD GLU A 180 O ILE A 189 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P1 KEG A 6003 O17 KEG A 6003 4556 1.52 REMARK 500 P1 KEG A 6003 O18 KEG A 6003 4556 1.52 REMARK 500 W1 KEG A 6003 O1 KEG A 6003 4556 1.62 REMARK 500 W2 KEG A 6003 O2 KEG A 6003 4556 1.63 REMARK 500 O18 KEG A 6003 O18 KEG A 6003 4556 1.70 REMARK 500 O17 KEG A 6003 O17 KEG A 6003 4556 1.72 REMARK 500 W2 KEG A 6003 O28 KEG A 6003 4556 1.83 REMARK 500 W1 KEG A 6003 O27 KEG A 6003 4556 1.85 REMARK 500 W2 KEG A 6003 O24 KEG A 6003 4556 1.85 REMARK 500 W6 KEG A 6003 O38 KEG A 6003 4556 1.86 REMARK 500 W5 KEG A 6003 O37 KEG A 6003 4556 1.86 REMARK 500 W1 KEG A 6003 O23 KEG A 6003 4556 1.89 REMARK 500 OD1 ASP A 218 O PHE A 673 2665 1.95 REMARK 500 O ASN A 251 ND2 ASN A 570 2665 1.97 REMARK 500 ND2 ASN A 404 OE1 GLN A 427 4556 2.14 REMARK 500 CD GLU A 267 O ARG A 574 2665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 139 CB CYS A 139 SG 0.107 REMARK 500 CYS A 343 CB CYS A 343 SG -0.142 REMARK 500 CYS A 356 CB CYS A 356 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 46 N - CA - C ANGL. DEV. = -23.9 DEGREES REMARK 500 LYS A 48 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 PHE A 52 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 PRO A 63 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 TRP A 66 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 CYS A 68 CA - CB - SG ANGL. DEV. = -21.8 DEGREES REMARK 500 GLY A 77 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 SER A 78 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 GLU A 80 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY A 82 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 CYS A 83 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 84 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO A 84 C - N - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 94 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 CYS A 95 CA - CB - SG ANGL. DEV. = 16.6 DEGREES REMARK 500 CYS A 95 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 CYS A 113 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 118 N - CA - C ANGL. DEV. = -22.3 DEGREES REMARK 500 SER A 121 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 SER A 131 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 SER A 131 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 CYS A 134 CA - CB - SG ANGL. DEV. = 12.9 DEGREES REMARK 500 CYS A 134 N - CA - C ANGL. DEV. = -29.3 DEGREES REMARK 500 TRP A 144 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ASP A 154 C - N - CA ANGL. DEV. = 19.9 DEGREES REMARK 500 ASP A 154 N - CA - C ANGL. DEV. = 26.8 DEGREES REMARK 500 GLN A 161 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 CYS A 163 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU A 166 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 VAL A 168 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 GLN A 170 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 PHE A 179 N - CA - C ANGL. DEV. = -28.4 DEGREES REMARK 500 GLU A 180 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 CYS A 188 N - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 ILE A 189 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 PRO A 199 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP A 200 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 CYS A 201 N - CA - C ANGL. DEV. = -25.0 DEGREES REMARK 500 ALA A 213 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 217 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO A 217 N - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 CYS A 222 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 HIS A 229 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 GLY A 230 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 SER A 231 C - N - CA ANGL. DEV. = -19.5 DEGREES REMARK 500 GLN A 233 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 CYS A 240 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 245 N - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 CYS A 263 CA - CB - SG ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 123 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 41.73 172.82 REMARK 500 CYS A 47 153.72 -27.87 REMARK 500 SER A 49 87.11 -45.81 REMARK 500 ASP A 51 42.15 -104.43 REMARK 500 PHE A 52 113.39 177.76 REMARK 500 CYS A 54 -134.66 -114.64 REMARK 500 CYS A 61 76.89 78.51 REMARK 500 PRO A 63 19.41 -33.58 REMARK 500 GLN A 64 -1.27 49.32 REMARK 500 CYS A 68 34.83 34.01 REMARK 500 GLN A 71 97.27 167.06 REMARK 500 VAL A 72 94.61 -42.87 REMARK 500 ASP A 79 30.13 21.68 REMARK 500 GLU A 80 3.72 164.89 REMARK 500 GLN A 81 11.57 -160.29 REMARK 500 PRO A 84 -119.49 -38.74 REMARK 500 PRO A 85 105.75 -29.26 REMARK 500 CYS A 88 61.79 29.73 REMARK 500 GLN A 90 78.86 57.18 REMARK 500 ASP A 91 92.29 153.55 REMARK 500 GLU A 92 71.22 -66.85 REMARK 500 CYS A 95 -167.71 -58.19 REMARK 500 HIS A 96 19.71 -64.22 REMARK 500 ASP A 97 -99.35 -165.45 REMARK 500 PHE A 105 67.57 -100.93 REMARK 500 VAL A 106 46.97 -21.60 REMARK 500 CYS A 107 78.76 46.27 REMARK 500 ASP A 108 47.57 -90.66 REMARK 500 ARG A 111 76.96 -39.91 REMARK 500 ASP A 112 69.02 -111.92 REMARK 500 CYS A 113 21.98 169.98 REMARK 500 ASP A 118 90.11 74.31 REMARK 500 GLU A 119 45.99 104.82 REMARK 500 ALA A 120 40.46 -159.20 REMARK 500 SER A 121 48.57 -172.83 REMARK 500 VAL A 124 113.73 -161.49 REMARK 500 CYS A 127 96.44 -58.39 REMARK 500 PRO A 129 32.92 -51.45 REMARK 500 ALA A 130 78.07 -156.70 REMARK 500 ASN A 135 17.85 -51.52 REMARK 500 SER A 137 71.19 72.09 REMARK 500 ILE A 140 144.21 -173.48 REMARK 500 GLN A 142 65.97 -47.69 REMARK 500 LEU A 143 5.02 -154.56 REMARK 500 ALA A 145 105.48 -52.03 REMARK 500 ASN A 148 22.40 -78.84 REMARK 500 ASP A 151 27.50 -166.83 REMARK 500 GLU A 153 72.07 -60.25 REMARK 500 ASP A 154 88.08 56.39 REMARK 500 SER A 156 20.03 -147.33 REMARK 500 REMARK 500 THIS ENTRY HAS 225 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 167 0.07 SIDE CHAIN REMARK 500 TYR A 468 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE ATOMS W1 AND W2 OF THE LIGAND REMARK 600 KEG 6003 ARE ON A TWO-FOLD REMARK 600 AXIS. COORDINATES FOR THE HALF OF REMARK 600 THE CLUSTER KEG 6003 IN THE ASYMMETRIC REMARK 600 UNIT ARE INCLUDED IN THIS ENTRY. THE REMARK 600 SECOND HALF OF THE CLUSTER CAN BE REMARK 600 GENERATED USING SYMMETRY OPERATION REMARK 600 Y,X,1-Z. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 KEG A 6003 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1008 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 66 O REMARK 620 2 GLN A 71 O 140.3 REMARK 620 3 ASP A 79 O 49.0 98.3 REMARK 620 4 ASP A 79 OD2 66.3 86.4 76.2 REMARK 620 5 GLU A 80 OE1 96.4 45.4 53.9 69.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD1 REMARK 620 2 ASP A 112 OD2 110.2 REMARK 620 3 ASP A 118 OD1 97.7 131.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD1 REMARK 620 2 ASP A 147 OD2 53.0 REMARK 620 3 ASP A 149 O 98.4 113.1 REMARK 620 4 ASP A 157 OD2 47.9 100.0 88.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 GLY A 198 O 83.9 REMARK 620 3 ASP A 200 OD1 155.9 119.7 REMARK 620 4 ASP A 206 OD2 122.4 72.7 66.0 REMARK 620 5 GLU A 207 OE1 61.5 68.2 120.1 61.0 REMARK 620 6 LYS A 582 NZ 74.6 108.7 99.9 162.7 136.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 232 O REMARK 620 2 GLN A 233 O 88.1 REMARK 620 3 GLU A 237 O 104.8 121.1 REMARK 620 4 GLU A 246 OE1 164.1 104.2 60.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 273 O REMARK 620 2 ASN A 276 OD1 81.9 REMARK 620 3 ASP A 280 OD2 129.5 89.7 REMARK 620 4 ASP A 286 OD1 108.2 117.0 119.7 REMARK 620 5 GLU A 287 OE2 99.8 54.3 115.1 62.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 294 OG1 REMARK 620 2 ASN A 295 N 71.5 REMARK 620 3 GLU A 296 OE2 102.9 62.9 REMARK 620 4 ASP A 310 OD1 137.4 100.1 109.9 REMARK 620 5 LEU A 311 O 92.6 128.3 163.7 59.2 REMARK 620 6 ILE A 313 N 74.6 146.1 128.0 103.7 51.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD1 REMARK 620 2 ASP A 333 OD2 44.0 REMARK 620 3 ILE A 334 O 65.3 77.2 REMARK 620 4 GLU A 336 OE1 134.0 96.2 87.1 REMARK 620 5 GLU A 336 OE2 88.1 58.0 56.8 46.1 REMARK 620 6 ASN A 349 OD1 131.9 173.9 97.0 85.1 120.3 REMARK 620 7 LEU A 350 O 68.2 94.2 120.1 152.4 152.1 87.2 REMARK 620 N 1 2 3 4 5 6 DBREF 1N7D A 1 699 UNP P01130 LDLR_HUMAN 22 720 SEQADV 1N7D GLN A 494 UNP P01130 ASN 515 ENGINEERED MUTATION SEQADV 1N7D GLN A 636 UNP P01130 ASN 657 ENGINEERED MUTATION SEQRES 1 A 699 ALA VAL GLY ASP ARG CYS GLU ARG ASN GLU PHE GLN CYS SEQRES 2 A 699 GLN ASP GLY LYS CYS ILE SER TYR LYS TRP VAL CYS ASP SEQRES 3 A 699 GLY SER ALA GLU CYS GLN ASP GLY SER ASP GLU SER GLN SEQRES 4 A 699 GLU THR CYS LEU SER VAL THR CYS LYS SER GLY ASP PHE SEQRES 5 A 699 SER CYS GLY GLY ARG VAL ASN ARG CYS ILE PRO GLN PHE SEQRES 6 A 699 TRP ARG CYS ASP GLY GLN VAL ASP CYS ASP ASN GLY SER SEQRES 7 A 699 ASP GLU GLN GLY CYS PRO PRO LYS THR CYS SER GLN ASP SEQRES 8 A 699 GLU PHE ARG CYS HIS ASP GLY LYS CYS ILE SER ARG GLN SEQRES 9 A 699 PHE VAL CYS ASP SER ASP ARG ASP CYS LEU ASP GLY SER SEQRES 10 A 699 ASP GLU ALA SER CYS PRO VAL LEU THR CYS GLY PRO ALA SEQRES 11 A 699 SER PHE GLN CYS ASN SER SER THR CYS ILE PRO GLN LEU SEQRES 12 A 699 TRP ALA CYS ASP ASN ASP PRO ASP CYS GLU ASP GLY SER SEQRES 13 A 699 ASP GLU TRP PRO GLN ARG CYS ARG GLY LEU TYR VAL PHE SEQRES 14 A 699 GLN GLY ASP SER SER PRO CYS SER ALA PHE GLU PHE HIS SEQRES 15 A 699 CYS LEU SER GLY GLU CYS ILE HIS SER SER TRP ARG CYS SEQRES 16 A 699 ASP GLY GLY PRO ASP CYS LYS ASP LYS SER ASP GLU GLU SEQRES 17 A 699 ASN CYS ALA VAL ALA THR CYS ARG PRO ASP GLU PHE GLN SEQRES 18 A 699 CYS SER ASP GLY ASN CYS ILE HIS GLY SER ARG GLN CYS SEQRES 19 A 699 ASP ARG GLU TYR ASP CYS LYS ASP MET SER ASP GLU VAL SEQRES 20 A 699 GLY CYS VAL ASN VAL THR LEU CYS GLU GLY PRO ASN LYS SEQRES 21 A 699 PHE LYS CYS HIS SER GLY GLU CYS ILE THR LEU ASP LYS SEQRES 22 A 699 VAL CYS ASN MET ALA ARG ASP CYS ARG ASP TRP SER ASP SEQRES 23 A 699 GLU PRO ILE LYS GLU CYS GLY THR ASN GLU CYS LEU ASP SEQRES 24 A 699 ASN ASN GLY GLY CYS SER HIS VAL CYS ASN ASP LEU LYS SEQRES 25 A 699 ILE GLY TYR GLU CYS LEU CYS PRO ASP GLY PHE GLN LEU SEQRES 26 A 699 VAL ALA GLN ARG ARG CYS GLU ASP ILE ASP GLU CYS GLN SEQRES 27 A 699 ASP PRO ASP THR CYS SER GLN LEU CYS VAL ASN LEU GLU SEQRES 28 A 699 GLY GLY TYR LYS CYS GLN CYS GLU GLU GLY PHE GLN LEU SEQRES 29 A 699 ASP PRO HIS THR LYS ALA CYS LYS ALA VAL GLY SER ILE SEQRES 30 A 699 ALA TYR LEU PHE PHE THR ASN ARG HIS GLU VAL ARG LYS SEQRES 31 A 699 MET THR LEU ASP ARG SER GLU TYR THR SER LEU ILE PRO SEQRES 32 A 699 ASN LEU ARG ASN VAL VAL ALA LEU ASP THR GLU VAL ALA SEQRES 33 A 699 SER ASN ARG ILE TYR TRP SER ASP LEU SER GLN ARG MET SEQRES 34 A 699 ILE CYS SER THR GLN LEU ASP ARG ALA HIS GLY VAL SER SEQRES 35 A 699 SER TYR ASP THR VAL ILE SER ARG ASP ILE GLN ALA PRO SEQRES 36 A 699 ASP GLY LEU ALA VAL ASP TRP ILE HIS SER ASN ILE TYR SEQRES 37 A 699 TRP THR ASP SER VAL LEU GLY THR VAL SER VAL ALA ASP SEQRES 38 A 699 THR LYS GLY VAL LYS ARG LYS THR LEU PHE ARG GLU GLN SEQRES 39 A 699 GLY SER LYS PRO ARG ALA ILE VAL VAL ASP PRO VAL HIS SEQRES 40 A 699 GLY PHE MET TYR TRP THR ASP TRP GLY THR PRO ALA LYS SEQRES 41 A 699 ILE LYS LYS GLY GLY LEU ASN GLY VAL ASP ILE TYR SER SEQRES 42 A 699 LEU VAL THR GLU ASN ILE GLN TRP PRO ASN GLY ILE THR SEQRES 43 A 699 LEU ASP LEU LEU SER GLY ARG LEU TYR TRP VAL ASP SER SEQRES 44 A 699 LYS LEU HIS SER ILE SER SER ILE ASP VAL ASN GLY GLY SEQRES 45 A 699 ASN ARG LYS THR ILE LEU GLU ASP GLU LYS ARG LEU ALA SEQRES 46 A 699 HIS PRO PHE SER LEU ALA VAL PHE GLU ASP LYS VAL PHE SEQRES 47 A 699 TRP THR ASP ILE ILE ASN GLU ALA ILE PHE SER ALA ASN SEQRES 48 A 699 ARG LEU THR GLY SER ASP VAL ASN LEU LEU ALA GLU ASN SEQRES 49 A 699 LEU LEU SER PRO GLU ASP MET VAL LEU PHE HIS GLN LEU SEQRES 50 A 699 THR GLN PRO ARG GLY VAL ASN TRP CYS GLU ARG THR THR SEQRES 51 A 699 LEU SER ASN GLY GLY CYS GLN TYR LEU CYS LEU PRO ALA SEQRES 52 A 699 PRO GLN ILE ASN PRO HIS SER PRO LYS PHE THR CYS ALA SEQRES 53 A 699 CYS PRO ASP GLY MET LEU LEU ALA ARG ASP MET ARG SER SEQRES 54 A 699 CYS LEU THR GLU ALA GLU ALA ALA VAL ALA MODRES 1N7D ASN A 251 ASN GLYCOSYLATION SITE MODRES 1N7D ASN A 135 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HET CA A1008 1 HET KEG A6001 53 HET KEG A6002 53 HET KEG A6003 29 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM KEG 12-TUNGSTOPHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 3(C6 H12 O6) FORMUL 4 CA 8(CA 2+) FORMUL 12 KEG 3(O40 P W12) SHEET 1 A 2 GLU A 219 GLN A 221 0 SHEET 2 A 2 CYS A 227 HIS A 229 -1 O ILE A 228 N PHE A 220 SHEET 1 B 2 LYS A 390 MET A 391 0 SHEET 2 B 2 TYR A 398 THR A 399 -1 O THR A 399 N LYS A 390 SHEET 1 C 3 ASP A 412 GLU A 414 0 SHEET 2 C 3 ARG A 419 TRP A 422 -1 O ARG A 419 N GLU A 414 SHEET 3 C 3 CYS A 431 GLN A 434 -1 O CYS A 431 N TRP A 422 SHEET 1 D 2 LEU A 458 ALA A 459 0 SHEET 2 D 2 TYR A 468 TRP A 469 -1 O TYR A 468 N ALA A 459 SHEET 1 E 2 VAL A 477 ALA A 480 0 SHEET 2 E 2 ARG A 487 LEU A 490 -1 O LEU A 490 N VAL A 477 SHEET 1 F 2 ILE A 501 VAL A 502 0 SHEET 2 F 2 TYR A 511 TRP A 512 -1 O TYR A 511 N VAL A 502 SHEET 1 G 2 ILE A 521 LYS A 522 0 SHEET 2 G 2 SER A 533 LEU A 534 -1 O LEU A 534 N ILE A 521 SHEET 1 H 4 ILE A 545 LEU A 547 0 SHEET 2 H 4 LEU A 554 ASP A 558 -1 O TYR A 555 N THR A 546 SHEET 3 H 4 SER A 563 ILE A 567 -1 O ILE A 567 N LEU A 554 SHEET 4 H 4 LYS A 575 ILE A 577 -1 O LYS A 575 N SER A 566 SHEET 1 I 4 ALA A 591 PHE A 593 0 SHEET 2 I 4 LYS A 596 THR A 600 -1 O PHE A 598 N ALA A 591 SHEET 3 I 4 ILE A 607 ASN A 611 -1 O ALA A 610 N VAL A 597 SHEET 4 I 4 GLY A 615 ASN A 619 -1 O GLY A 615 N ASN A 611 SHEET 1 J 2 LEU A 682 LEU A 683 0 SHEET 2 J 2 CYS A 690 LEU A 691 -1 N LEU A 691 O LEU A 682 SSBOND 1 CYS A 47 CYS A 61 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 3 CYS A 68 CYS A 83 1555 1555 2.03 SSBOND 4 CYS A 95 CYS A 113 1555 1555 2.05 SSBOND 5 CYS A 107 CYS A 122 1555 1555 2.03 SSBOND 6 CYS A 127 CYS A 139 1555 1555 2.10 SSBOND 7 CYS A 134 CYS A 152 1555 1555 2.10 SSBOND 8 CYS A 146 CYS A 163 1555 1555 2.04 SSBOND 9 CYS A 176 CYS A 188 1555 1555 2.07 SSBOND 10 CYS A 183 CYS A 201 1555 1555 2.02 SSBOND 11 CYS A 195 CYS A 210 1555 1555 2.05 SSBOND 12 CYS A 215 CYS A 227 1555 1555 2.01 SSBOND 13 CYS A 222 CYS A 240 1555 1555 2.04 SSBOND 14 CYS A 234 CYS A 249 1555 1555 2.03 SSBOND 15 CYS A 255 CYS A 268 1555 1555 2.04 SSBOND 16 CYS A 263 CYS A 281 1555 1555 2.03 SSBOND 17 CYS A 275 CYS A 292 1555 1555 2.03 SSBOND 18 CYS A 297 CYS A 308 1555 1555 2.04 SSBOND 19 CYS A 304 CYS A 317 1555 1555 2.02 SSBOND 20 CYS A 319 CYS A 331 1555 1555 2.02 SSBOND 21 CYS A 337 CYS A 347 1555 1555 2.06 SSBOND 22 CYS A 343 CYS A 356 1555 1555 2.01 SSBOND 23 CYS A 358 CYS A 371 1555 1555 2.04 SSBOND 24 CYS A 646 CYS A 660 1555 1555 2.06 SSBOND 25 CYS A 656 CYS A 675 1555 1555 2.02 SSBOND 26 CYS A 677 CYS A 690 1555 1555 2.03 LINK ND2 ASN A 135 C1 NAG B 1 1555 1555 1.73 LINK ND2 ASN A 251 C1 NAG C 1 1555 1555 1.83 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.39 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.40 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.41 LINK O TRP A 66 CA CA A1008 1555 1555 2.17 LINK O GLN A 71 CA CA A1008 1555 1555 2.86 LINK O ASP A 79 CA CA A1008 1555 1555 2.83 LINK OD2 ASP A 79 CA CA A1008 1555 1555 2.62 LINK OE1 GLU A 80 CA CA A1008 1555 1555 2.57 LINK OD1 ASP A 108 CA CA A1007 1555 1555 2.60 LINK OD2 ASP A 112 CA CA A1007 1555 1555 2.05 LINK OD1 ASP A 118 CA CA A1007 1555 1555 2.89 LINK OD1 ASP A 147 CA CA A1006 1555 1555 2.36 LINK OD2 ASP A 147 CA CA A1006 1555 1555 2.54 LINK O ASP A 149 CA CA A1006 1555 1555 2.10 LINK OD2 ASP A 157 CA CA A1006 1555 1555 2.79 LINK OD1 ASP A 196 CA CA A1003 1555 1555 2.50 LINK O GLY A 198 CA CA A1003 1555 1555 2.16 LINK OD1 ASP A 200 CA CA A1003 1555 1555 2.13 LINK OD2 ASP A 206 CA CA A1003 1555 1555 2.94 LINK OE1 GLU A 207 CA CA A1003 1555 1555 2.43 LINK O ARG A 232 CA CA A1004 1555 1555 2.24 LINK O GLN A 233 CA CA A1004 1555 1555 2.78 LINK O GLU A 237 CA CA A1004 1555 1555 2.75 LINK OE1 GLU A 246 CA CA A1004 1555 1555 2.79 LINK O LYS A 273 CA CA A1005 1555 1555 2.57 LINK OD1 ASN A 276 CA CA A1005 1555 1555 2.98 LINK OD2 ASP A 280 CA CA A1005 1555 1555 2.74 LINK OD1 ASP A 286 CA CA A1005 1555 1555 2.55 LINK OE2 GLU A 287 CA CA A1005 1555 1555 2.69 LINK OG1 THR A 294 CA CA A1001 1555 1555 2.91 LINK N ASN A 295 CA CA A1001 1555 1555 2.51 LINK OE2 GLU A 296 CA CA A1001 1555 1555 2.78 LINK OD1 ASP A 310 CA CA A1001 1555 1555 2.43 LINK O LEU A 311 CA CA A1001 1555 1555 2.05 LINK N ILE A 313 CA CA A1001 1555 1555 2.86 LINK OD1 ASP A 333 CA CA A1002 1555 1555 2.99 LINK OD2 ASP A 333 CA CA A1002 1555 1555 2.90 LINK O ILE A 334 CA CA A1002 1555 1555 2.35 LINK OE1 GLU A 336 CA CA A1002 1555 1555 2.79 LINK OE2 GLU A 336 CA CA A1002 1555 1555 2.82 LINK OD1 ASN A 349 CA CA A1002 1555 1555 2.23 LINK O LEU A 350 CA CA A1002 1555 1555 2.10 LINK NZ LYS A 582 CA CA A1003 1555 1555 2.99 CISPEP 1 ASP A 339 PRO A 340 0 2.60 CRYST1 185.290 185.290 85.186 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005397 0.003116 0.000000 0.00000 SCALE2 0.000000 0.006232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011739 0.00000