HEADER LIGASE/CELL CYCLE 19-NOV-02 1N87 TITLE SOLUTION STRUCTURE OF THE U-BOX OF PRP19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA SPLICING FACTOR PRP19; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PRP19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UBIQUITIN LIGASE, E3 LIGASE, U-BOX, LIGASE-CELL CYCLE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.J.CHAZIN,M.D.OHI,C.W.VANDER KOOI REVDAT 5 23-FEB-22 1N87 1 REMARK REVDAT 4 24-FEB-09 1N87 1 VERSN REVDAT 3 13-SEP-05 1N87 1 AUTHOR REVDAT 2 25-NOV-03 1N87 1 DBREF REVDAT 1 15-APR-03 1N87 0 JRNL AUTH M.D.OHI,C.W.VANDER KOOI,J.A.ROSENBERG,W.J.CHAZIN,K.L.GOULD JRNL TITL STRUCTURAL INSIGHTS INTO THE U-BOX, A DOMAIN ASSOCIATED WITH JRNL TITL 2 MULTI-UBIQUITINATION JRNL REF NAT.STRUCT.BIOL. V. 10 250 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12627222 JRNL DOI 10.1038/NSB906 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AMBER 6.0 REMARK 3 AUTHORS : GUENTERT (DYANA), PEARLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N87 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017640. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.28 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PRP19(1-73); UL 20MM REMARK 210 PHOSPHATE BUFFER PH 7.0; 20MM REMARK 210 NACL; 1MM PRP19(1-73); U-15N REMARK 210 20MM PHOSPHATE BUFFER PH 7.0; REMARK 210 20MM NACL; 1MM PRP19(1-73); U- REMARK 210 15N,13C 20MM PHOSPHATE BUFFER PH REMARK 210 7.0; 20MM NACL; 1MM PRP19(1-73); REMARK 210 U-15N,13C 20MM PHOSPHATE BUFFER REMARK 210 PH 7.0; 20MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 11 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 17 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 19 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 20 1.14 58.62 REMARK 500 1 ASN A 42 24.75 48.71 REMARK 500 1 LEU A 45 144.59 72.19 REMARK 500 1 SER A 46 -61.50 -143.32 REMARK 500 2 ASN A 42 25.17 47.42 REMARK 500 2 LEU A 45 133.92 71.79 REMARK 500 2 SER A 46 -45.03 -135.12 REMARK 500 3 SER A 6 -6.62 -140.19 REMARK 500 3 PRO A 10 109.99 -55.73 REMARK 500 3 ARG A 20 -3.94 64.30 REMARK 500 3 LEU A 45 147.70 70.10 REMARK 500 3 SER A 46 -48.47 -146.38 REMARK 500 4 PRO A 17 -8.06 -56.33 REMARK 500 4 ARG A 20 13.40 55.40 REMARK 500 4 PRO A 39 -8.29 -56.76 REMARK 500 4 ASN A 42 29.30 45.44 REMARK 500 4 LEU A 45 147.15 73.96 REMARK 500 4 SER A 46 -57.79 -145.89 REMARK 500 5 ARG A 20 11.25 59.86 REMARK 500 5 ILE A 40 -50.16 -129.15 REMARK 500 5 LEU A 45 139.87 69.25 REMARK 500 5 SER A 46 -55.12 -139.01 REMARK 500 6 ARG A 20 11.60 50.37 REMARK 500 6 LEU A 45 139.10 71.80 REMARK 500 6 SER A 46 -51.58 -137.36 REMARK 500 7 ARG A 20 4.50 55.61 REMARK 500 7 LEU A 45 128.27 66.33 REMARK 500 7 VAL A 54 98.57 -23.56 REMARK 500 8 ARG A 20 -1.53 63.60 REMARK 500 8 LEU A 45 149.14 65.10 REMARK 500 8 SER A 46 -54.18 -142.86 REMARK 500 8 ILE A 53 57.72 -96.60 REMARK 500 9 ARG A 20 7.97 56.23 REMARK 500 9 LEU A 45 132.69 72.00 REMARK 500 9 SER A 46 -46.71 -132.95 REMARK 500 10 LEU A 45 144.81 70.72 REMARK 500 10 SER A 46 -52.40 -145.09 REMARK 500 11 ARG A 20 17.66 47.92 REMARK 500 11 ASN A 42 21.33 49.68 REMARK 500 11 LEU A 45 141.43 70.86 REMARK 500 11 SER A 46 -53.86 -140.99 REMARK 500 12 ILE A 40 -52.34 -124.80 REMARK 500 12 ASN A 42 22.40 49.17 REMARK 500 12 LEU A 45 132.43 65.89 REMARK 500 12 SER A 46 -48.00 -131.96 REMARK 500 13 PRO A 17 -7.68 -52.46 REMARK 500 13 ASN A 42 19.78 51.70 REMARK 500 13 LEU A 45 143.16 66.00 REMARK 500 13 SER A 46 -41.14 -136.15 REMARK 500 14 ARG A 20 -2.00 63.38 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1N87 A 1 56 UNP P32523 PRP19_YEAST 1 56 SEQRES 1 A 56 MET LEU CYS ALA ILE SER GLY LYS VAL PRO ARG ARG PRO SEQRES 2 A 56 VAL LEU SER PRO LYS SER ARG THR ILE PHE GLU LYS SER SEQRES 3 A 56 LEU LEU GLU GLN TYR VAL LYS ASP THR GLY ASN ASP PRO SEQRES 4 A 56 ILE THR ASN GLU PRO LEU SER ILE GLU GLU ILE VAL GLU SEQRES 5 A 56 ILE VAL PRO SER HELIX 1 1 LYS A 25 THR A 35 1 11 HELIX 2 2 SER A 46 ILE A 50 5 5 SHEET 1 A 3 PHE A 23 GLU A 24 0 SHEET 2 A 3 PRO A 13 LEU A 15 -1 N VAL A 14 O PHE A 23 SHEET 3 A 3 VAL A 51 GLU A 52 -1 O VAL A 51 N LEU A 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1