HEADER TRANSFERASE 21-NOV-02 1N8Y TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF RAT HER2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOONCOPROTEIN; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: EXTRACELLULAR REGION (RESIDUES 26-633); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NEU; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CHO(LEC1); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGHV0 KEYWDS TYROSIN KINASE RECEPTOR, CELL SURFACE RECEPTOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.CHO,K.MASON,K.X.RAMYAR,A.M.STANLEY,S.B.GABELLI,D.W.DENNEY JR., AUTHOR 2 D.J.LEAHY REVDAT 6 30-OCT-24 1N8Y 1 REMARK REVDAT 5 16-AUG-23 1N8Y 1 HETSYN REVDAT 4 29-JUL-20 1N8Y 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1N8Y 1 VERSN REVDAT 2 24-FEB-09 1N8Y 1 VERSN REVDAT 1 18-FEB-03 1N8Y 0 JRNL AUTH H.-S.CHO,K.MASON,K.X.RAMYAR,A.M.STANLEY,S.B.GABELLI, JRNL AUTH 2 D.W.DENNEY JR.,D.J.LEAHY JRNL TITL STRUCTURE OF THE EXTRACELLULAR REGION OF HER2 ALONE AND IN JRNL TITL 2 COMPLEX WITH THE HERCEPTIN FAB JRNL REF NATURE V. 421 756 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 12610629 JRNL DOI 10.1038/NATURE01392 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 30022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1764 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.364 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4781 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6509 ; 1.724 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 589 ; 7.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 713 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3644 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1883 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2952 ; 0.675 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4757 ; 1.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1829 ; 2.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1752 ; 3.802 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1M6B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-30% PEG4000, 50MM NA CITRATE PH5.4, REMARK 280 10MM EDTA, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.43500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 102 REMARK 465 ASN C 103 REMARK 465 VAL C 104 REMARK 465 ALA C 105 REMARK 465 ALA C 106 REMARK 465 SER C 107 REMARK 465 THR C 108 REMARK 465 PRO C 109 REMARK 465 GLY C 110 REMARK 465 ARG C 111 REMARK 465 THR C 112 REMARK 465 ASN C 254 REMARK 465 THR C 255 REMARK 465 ASP C 256 REMARK 465 THR C 257 REMARK 465 PHE C 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 126 O ALA C 220 1.77 REMARK 500 N ALA C 221 O HOH C 786 1.96 REMARK 500 ND2 ASN C 46 C2 NAG B 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 8 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 144 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 190 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU C 283 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ASP C 363 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP C 396 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 400 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 462 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 597 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 2 -29.06 -145.10 REMARK 500 LYS C 10 -127.68 55.85 REMARK 500 ALA C 45 -52.29 -14.99 REMARK 500 LEU C 74 45.24 -109.91 REMARK 500 ASP C 88 17.99 55.11 REMARK 500 LYS C 89 -2.50 -147.24 REMARK 500 TYR C 142 5.08 82.19 REMARK 500 ASN C 181 46.99 -74.94 REMARK 500 SER C 201 -130.54 47.15 REMARK 500 HIS C 236 -70.85 -121.28 REMARK 500 ASN C 281 -0.48 79.45 REMARK 500 VAL C 287 4.15 -69.11 REMARK 500 PRO C 316 117.59 -31.13 REMARK 500 GLU C 327 -120.63 60.08 REMARK 500 ASP C 417 25.21 48.23 REMARK 500 LEU C 434 58.71 -61.94 REMARK 500 SER C 475 149.03 -174.56 REMARK 500 HIS C 512 -134.25 -135.18 REMARK 500 LEU C 529 -114.37 34.83 REMARK 500 SER C 535 101.46 -168.59 REMARK 500 HIS C 568 -96.20 -123.48 REMARK 500 SER C 572 -112.10 57.66 REMARK 500 ASP C 586 -82.92 -33.24 REMARK 500 LEU C 587 43.06 -97.54 REMARK 500 ASP C 597 167.19 -41.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 528 LEU C 529 146.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6B RELATED DB: PDB REMARK 900 HUMAN HER3 DBREF 1N8Y C 1 608 GB 22651765 AAM50093 26 633 SEQRES 1 C 608 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 C 608 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 C 608 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 C 608 LEU THR TYR VAL PRO ALA ASN ALA SER LEU SER PHE LEU SEQRES 5 C 608 GLN ASP ILE GLN GLU VAL GLN GLY TYR MET LEU ILE ALA SEQRES 6 C 608 HIS ASN GLN VAL LYS ARG VAL PRO LEU GLN ARG LEU ARG SEQRES 7 C 608 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP LYS TYR ALA SEQRES 8 C 608 LEU ALA VAL LEU ASP ASN ARG ASP PRO GLN ASP ASN VAL SEQRES 9 C 608 ALA ALA SER THR PRO GLY ARG THR PRO GLU GLY LEU ARG SEQRES 10 C 608 GLU LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY SEQRES 11 C 608 GLY VAL LEU ILE ARG GLY ASN PRO GLN LEU CYS TYR GLN SEQRES 12 C 608 ASP MET VAL LEU TRP LYS ASP VAL PHE ARG LYS ASN ASN SEQRES 13 C 608 GLN LEU ALA PRO VAL ASP ILE ASP THR ASN ARG SER ARG SEQRES 14 C 608 ALA CYS PRO PRO CYS ALA PRO ALA CYS LYS ASP ASN HIS SEQRES 15 C 608 CYS TRP GLY GLU SER PRO GLU ASP CYS GLN ILE LEU THR SEQRES 16 C 608 GLY THR ILE CYS THR SER GLY CYS ALA ARG CYS LYS GLY SEQRES 17 C 608 ARG LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA SEQRES 18 C 608 GLY CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS SEQRES 19 C 608 LEU HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS SEQRES 20 C 608 PRO ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER SEQRES 21 C 608 MET HIS ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER SEQRES 22 C 608 CYS VAL THR THR CYS PRO TYR ASN TYR LEU SER THR GLU SEQRES 23 C 608 VAL GLY SER CYS THR LEU VAL CYS PRO PRO ASN ASN GLN SEQRES 24 C 608 GLU VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS SEQRES 25 C 608 CYS SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY SEQRES 26 C 608 MET GLU HIS LEU ARG GLY ALA ARG ALA ILE THR SER ASP SEQRES 27 C 608 ASN VAL GLN GLU PHE ASP GLY CYS LYS LYS ILE PHE GLY SEQRES 28 C 608 SER LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO SEQRES 29 C 608 SER SER GLY ILE ALA PRO LEU ARG PRO GLU GLN LEU GLN SEQRES 30 C 608 VAL PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR SEQRES 31 C 608 ILE SER ALA TRP PRO ASP SER LEU ARG ASP LEU SER VAL SEQRES 32 C 608 PHE GLN ASN LEU ARG ILE ILE ARG GLY ARG ILE LEU HIS SEQRES 33 C 608 ASP GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SEQRES 34 C 608 HIS SER LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER SEQRES 35 C 608 GLY LEU ALA LEU ILE HIS ARG ASN ALA HIS LEU CYS PHE SEQRES 36 C 608 VAL HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO SEQRES 37 C 608 HIS GLN ALA LEU LEU HIS SER GLY ASN ARG PRO GLU GLU SEQRES 38 C 608 ASP CYS GLY LEU GLU GLY LEU VAL CYS ASN SER LEU CYS SEQRES 39 C 608 ALA HIS GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS SEQRES 40 C 608 VAL ASN CYS SER HIS PHE LEU ARG GLY GLN GLU CYS VAL SEQRES 41 C 608 GLU GLU CYS ARG VAL TRP LYS GLY LEU PRO ARG GLU TYR SEQRES 42 C 608 VAL SER ASP LYS ARG CYS LEU PRO CYS HIS PRO GLU CYS SEQRES 43 C 608 GLN PRO GLN ASN SER SER GLU THR CYS PHE GLY SER GLU SEQRES 44 C 608 ALA ASP GLN CYS ALA ALA CYS ALA HIS TYR LYS ASP SER SEQRES 45 C 608 SER SER CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO SEQRES 46 C 608 ASP LEU SER TYR MET PRO ILE TRP LYS TYR PRO ASP GLU SEQRES 47 C 608 GLU GLY ILE CYS GLN PRO CYS PRO ILE ASN MODRES 1N8Y ASN C 46 ASN GLYCOSYLATION SITE MODRES 1N8Y ASN C 166 ASN GLYCOSYLATION SITE MODRES 1N8Y ASN C 238 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 766 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 5 HOH *84(H2 O) HELIX 1 1 SER C 16 GLN C 29 1 14 HELIX 2 2 LEU C 49 GLN C 53 5 5 HELIX 3 3 LEU C 85 ASP C 88 5 4 HELIX 4 4 LEU C 147 PHE C 152 1 6 HELIX 5 5 ARG C 153 GLN C 157 5 5 HELIX 6 6 LEU C 210 CYS C 214 5 5 HELIX 7 7 MET C 326 ARG C 330 5 5 HELIX 8 8 ASN C 339 ASP C 344 5 6 HELIX 9 9 LEU C 356 GLY C 362 1 7 HELIX 10 10 ARG C 372 GLU C 380 5 9 HELIX 11 11 LEU C 401 GLN C 405 5 5 HELIX 12 12 LEU C 415 GLY C 418 5 4 HELIX 13 13 PRO C 460 PHE C 465 1 6 HELIX 14 14 PRO C 479 GLY C 484 1 6 HELIX 15 15 CYS C 494 HIS C 498 5 5 HELIX 16 16 GLU C 559 CYS C 563 5 5 SHEET 1 A 5 VAL C 3 THR C 5 0 SHEET 2 A 5 VAL C 33 GLN C 35 1 O GLN C 35 N CYS C 4 SHEET 3 A 5 GLU C 57 VAL C 58 1 O GLU C 57 N VAL C 34 SHEET 4 A 5 ILE C 79 VAL C 80 1 O ILE C 79 N VAL C 58 SHEET 5 A 5 GLU C 126 ILE C 127 1 O GLU C 126 N VAL C 80 SHEET 1 B 5 LEU C 38 THR C 41 0 SHEET 2 B 5 MET C 62 ALA C 65 1 O LEU C 63 N LEU C 40 SHEET 3 B 5 TYR C 90 LEU C 95 1 O ALA C 91 N MET C 62 SHEET 4 B 5 GLY C 131 ARG C 135 1 O LEU C 133 N VAL C 94 SHEET 5 B 5 VAL C 161 ILE C 163 1 O ASP C 162 N VAL C 132 SHEET 1 C 2 PHE C 237 HIS C 239 0 SHEET 2 C 2 ILE C 242 GLU C 244 -1 O GLU C 244 N PHE C 237 SHEET 1 D 2 VAL C 251 THR C 252 0 SHEET 2 D 2 MET C 261 HIS C 262 -1 O MET C 261 N THR C 252 SHEET 1 E 2 TYR C 268 PHE C 270 0 SHEET 2 E 2 SER C 273 VAL C 275 -1 O VAL C 275 N TYR C 268 SHEET 1 F 2 LEU C 283 SER C 284 0 SHEET 2 F 2 CYS C 290 THR C 291 -1 O THR C 291 N LEU C 283 SHEET 1 G 2 ASN C 298 THR C 302 0 SHEET 2 G 2 GLN C 308 LYS C 312 -1 O ARG C 309 N VAL C 301 SHEET 1 H 5 CYS C 321 TYR C 322 0 SHEET 2 H 5 LYS C 348 PHE C 350 1 O PHE C 350 N CYS C 321 SHEET 3 H 5 GLU C 384 ILE C 385 1 O GLU C 384 N ILE C 349 SHEET 4 H 5 ILE C 409 ILE C 410 1 O ILE C 409 N ILE C 385 SHEET 5 H 5 GLU C 439 LEU C 440 1 O GLU C 439 N ILE C 410 SHEET 1 I 5 LEU C 353 PHE C 355 0 SHEET 2 I 5 LEU C 389 ILE C 391 1 O TYR C 390 N PHE C 355 SHEET 3 I 5 TYR C 420 GLN C 425 1 O THR C 423 N ILE C 391 SHEET 4 I 5 LEU C 444 HIS C 448 1 O LEU C 446 N LEU C 422 SHEET 5 I 5 LEU C 472 SER C 475 1 O LEU C 473 N ALA C 445 SHEET 1 J 2 PHE C 513 ARG C 515 0 SHEET 2 J 2 GLU C 518 VAL C 520 -1 O VAL C 520 N PHE C 513 SHEET 1 K 2 GLU C 532 TYR C 533 0 SHEET 2 K 2 LEU C 540 PRO C 541 -1 O LEU C 540 N TYR C 533 SHEET 1 L 2 TYR C 569 ASP C 571 0 SHEET 2 L 2 SER C 574 VAL C 576 -1 O SER C 574 N ASP C 571 SHEET 1 M 3 SER C 581 VAL C 583 0 SHEET 2 M 3 ILE C 592 PRO C 596 -1 O ILE C 592 N VAL C 583 SHEET 3 M 3 CYS C 602 PRO C 604 -1 O GLN C 603 N TYR C 595 SSBOND 1 CYS C 4 CYS C 31 1555 1555 2.05 SSBOND 2 CYS C 141 CYS C 171 1555 1555 2.04 SSBOND 3 CYS C 174 CYS C 183 1555 1555 2.04 SSBOND 4 CYS C 178 CYS C 191 1555 1555 2.05 SSBOND 5 CYS C 199 CYS C 206 1555 1555 2.04 SSBOND 6 CYS C 203 CYS C 214 1555 1555 2.05 SSBOND 7 CYS C 215 CYS C 223 1555 1555 2.03 SSBOND 8 CYS C 219 CYS C 231 1555 1555 2.02 SSBOND 9 CYS C 234 CYS C 243 1555 1555 2.02 SSBOND 10 CYS C 247 CYS C 274 1555 1555 2.04 SSBOND 11 CYS C 278 CYS C 290 1555 1555 2.08 SSBOND 12 CYS C 294 CYS C 310 1555 1555 2.06 SSBOND 13 CYS C 313 CYS C 317 1555 1555 2.04 SSBOND 14 CYS C 321 CYS C 346 1555 1555 2.07 SSBOND 15 CYS C 454 CYS C 483 1555 1555 2.52 SSBOND 16 CYS C 490 CYS C 499 1555 1555 2.06 SSBOND 17 CYS C 494 CYS C 507 1555 1555 2.04 SSBOND 18 CYS C 510 CYS C 519 1555 1555 2.03 SSBOND 19 CYS C 523 CYS C 539 1555 1555 2.02 SSBOND 20 CYS C 542 CYS C 555 1555 1555 2.03 SSBOND 21 CYS C 546 CYS C 563 1555 1555 2.04 SSBOND 22 CYS C 566 CYS C 575 1555 1555 2.04 SSBOND 23 CYS C 579 CYS C 602 1555 1555 2.05 LINK ND2 ASN C 46 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN C 166 C1 NAG C 766 1555 1555 1.46 LINK ND2 ASN C 238 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 CRYST1 130.870 116.400 55.370 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018061 0.00000