data_1NAB # _entry.id 1NAB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NAB pdb_00001nab 10.2210/pdb1nab/pdb NDB DD0054 ? ? RCSB RCSB017715 ? ? WWPDB D_1000017715 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-02-25 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-08 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NAB _pdbx_database_status.recvd_initial_deposition_date 2002-11-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Temperini, C.' 1 'Messori, L.' 2 'Orioli, P.' 3 'Di Bugno, C.' 4 'Animati, F.' 5 'Ughetto, G.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes ; 'Nucleic Acids Res.' 31 1464 1469 2003 NARHAD UK 0305-1048 0389 ? 12595554 10.1093/nar/gkg245 1 'Structural comparison of anticancer drug-dna complexes: adriamycin and daunomycin' Biochemistry 29 2538 2549 1990 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Temperini, C.' 1 ? primary 'Messori, L.' 2 ? primary 'Orioli, P.' 3 ? primary 'Di Bugno, C.' 4 ? primary 'Animati, F.' 5 ? primary 'Ughetto, G.' 6 ? 1 'Frederick, C.A.' 7 ? 1 'Williams, L.D.' 8 ? 1 'Ughetto, G.' 9 ? 1 'van der Marel, G.A.' 10 ? 1 'van Boom, J.H.' 11 ? 1 'Rich, A.' 12 ? 1 'Wang, A.H.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*AP*TP*CP*G)-3'" 1809.217 2 ? ? ? ? 2 non-polymer syn ;7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE ; 643.635 2 ? ? ? ? 3 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE ; 44D 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'automatic synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 44D non-polymer . ;7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE ; "4'-(O-ALPHA-L-DAUNOSAMINYL)-4-DEMETHOXYDOXORUBICIN" 'C32 H37 N O13' 643.635 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DA 3 9 9 DA A B . n B 1 4 DT 4 10 10 DT T B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 44D 1 41 14 44D MEN A . D 2 44D 1 40 13 44D MEN B . E 3 HOH 1 42 6 HOH HOH A . E 3 HOH 2 43 8 HOH HOH A . E 3 HOH 3 44 10 HOH HOH A . E 3 HOH 4 45 11 HOH HOH A . E 3 HOH 5 46 12 HOH HOH A . E 3 HOH 6 47 13 HOH HOH A . E 3 HOH 7 48 17 HOH HOH A . E 3 HOH 8 49 18 HOH HOH A . E 3 HOH 9 50 26 HOH HOH A . E 3 HOH 10 51 29 HOH HOH A . E 3 HOH 11 52 30 HOH HOH A . E 3 HOH 12 53 31 HOH HOH A . F 3 HOH 1 41 1 HOH HOH B . F 3 HOH 2 42 2 HOH HOH B . F 3 HOH 3 43 3 HOH HOH B . F 3 HOH 4 44 5 HOH HOH B . F 3 HOH 5 45 7 HOH HOH B . F 3 HOH 6 46 9 HOH HOH B . F 3 HOH 7 47 14 HOH HOH B . F 3 HOH 8 48 15 HOH HOH B . F 3 HOH 9 49 16 HOH HOH B . F 3 HOH 10 50 20 HOH HOH B . F 3 HOH 11 51 21 HOH HOH B . F 3 HOH 12 52 22 HOH HOH B . F 3 HOH 13 53 23 HOH HOH B . F 3 HOH 14 54 24 HOH HOH B . F 3 HOH 15 55 25 HOH HOH B . F 3 HOH 16 56 27 HOH HOH B . F 3 HOH 17 57 28 HOH HOH B . F 3 HOH 18 58 33 HOH HOH B . F 3 HOH 19 59 34 HOH HOH B . F 3 HOH 20 60 35 HOH HOH B . F 3 HOH 21 61 36 HOH HOH B . F 3 HOH 22 62 37 HOH HOH B . F 3 HOH 23 63 38 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 NUCLSQ refinement . ? 4 # _cell.entry_id 1NAB _cell.length_a 37.813 _cell.length_b 37.813 _cell.length_c 63.020 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1NAB _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1NAB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_percent_sol 60.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'magnesium chloride, cacodylate, spermine hydrochloride, MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 'spermine hydrochloride' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'magnesium chloride' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-03-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 Channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.03 # _reflns.entry_id 1NAB _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 18.90 _reflns.number_all 28812 _reflns.number_obs 28737 _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.4 _reflns.B_iso_Wilson_estimate 41.56 _reflns.pdbx_redundancy 10.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.17 _reflns_shell.percent_possible_all 75.6 _reflns_shell.Rmerge_I_obs 0.0874 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1NAB _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 8.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 2621 _refine.ls_number_reflns_obs 2321 _refine.ls_number_reflns_R_free 216 _refine.ls_percent_reflns_obs 69.7 _refine.ls_R_factor_all 0.266 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.233 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Hendrickson, W.A.' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 367 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.13 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.0 _refine_ls_shell.d_res_low 2.20 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.455 _refine_ls_shell.percent_reflns_obs 3.7 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1NAB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NAB _struct.title ;The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NAB _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'right handed dna, double helix, complexed with drug, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1NAB _struct_ref.pdbx_db_accession 1NAB _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NAB A 1 ? 6 ? 1NAB 1 ? 6 ? 1 6 2 1 1NAB B 1 ? 6 ? 1NAB 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 44D 40 ? 13 'BINDING SITE FOR RESIDUE 44D B 40' AC2 Software A 44D 41 ? 7 'BINDING SITE FOR RESIDUE 44D A 41' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 13 DG A 6 ? DG A 6 . ? 4_455 ? 3 AC1 13 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 13 HOH E . ? HOH A 43 . ? 1_555 ? 5 AC1 13 DC B 1 ? DC B 7 . ? 3_554 ? 6 AC1 13 DC B 1 ? DC B 7 . ? 1_555 ? 7 AC1 13 DG B 2 ? DG B 8 . ? 1_555 ? 8 AC1 13 DG B 2 ? DG B 8 . ? 3_554 ? 9 AC1 13 DA B 3 ? DA B 9 . ? 1_555 ? 10 AC1 13 DG B 6 ? DG B 12 . ? 6_455 ? 11 AC1 13 HOH F . ? HOH B 46 . ? 3_554 ? 12 AC1 13 HOH F . ? HOH B 57 . ? 1_555 ? 13 AC1 13 HOH F . ? HOH B 63 . ? 6_455 ? 14 AC2 7 DC A 1 ? DC A 1 . ? 1_555 ? 15 AC2 7 DG A 2 ? DG A 2 . ? 1_555 ? 16 AC2 7 DA A 3 ? DA A 3 . ? 1_555 ? 17 AC2 7 DT A 4 ? DT A 4 . ? 1_555 ? 18 AC2 7 HOH E . ? HOH A 50 . ? 1_555 ? 19 AC2 7 DC B 5 ? DC B 11 . ? 1_555 ? 20 AC2 7 DG B 6 ? DG B 12 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 50 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 52 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.375 1.419 -0.044 0.006 N 2 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.660 1.593 0.067 0.010 N 3 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.597 1.519 0.078 0.010 N 4 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.374 1.419 -0.045 0.006 N 5 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.343 1.391 -0.048 0.007 N 6 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.351 1.305 0.046 0.006 N 7 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.246 1.341 -0.095 0.010 N 8 1 P A DA 3 ? ? "O5'" A DA 3 ? ? 1.653 1.593 0.060 0.010 N 9 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? 1.497 1.420 0.077 0.011 N 10 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.312 1.373 -0.061 0.008 N 11 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.410 1.374 0.036 0.006 N 12 1 C6 A DA 3 ? ? N6 A DA 3 ? ? 1.383 1.335 0.048 0.008 N 13 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.658 1.593 0.065 0.010 N 14 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.693 1.593 0.100 0.010 N 15 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.581 1.519 0.062 0.010 N 16 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.389 1.335 0.054 0.007 N 17 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.592 1.519 0.073 0.010 N 18 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.252 1.341 -0.089 0.010 N 19 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.594 1.529 0.065 0.010 N 20 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.322 1.391 -0.069 0.007 N 21 1 C5 B DG 8 ? ? N7 B DG 8 ? ? 1.326 1.388 -0.062 0.006 N 22 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.346 1.305 0.041 0.006 N 23 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.258 1.341 -0.083 0.010 N 24 1 "C5'" B DA 9 ? ? "C4'" B DA 9 ? ? 1.429 1.509 -0.080 0.011 N 25 1 "C4'" B DA 9 ? ? "C3'" B DA 9 ? ? 1.602 1.529 0.073 0.010 N 26 1 "C2'" B DA 9 ? ? "C1'" B DA 9 ? ? 1.592 1.519 0.073 0.010 N 27 1 C8 B DA 9 ? ? N9 B DA 9 ? ? 1.320 1.373 -0.053 0.008 N 28 1 N9 B DA 9 ? ? C4 B DA 9 ? ? 1.444 1.374 0.070 0.006 N 29 1 "C4'" B DT 10 ? ? "C3'" B DT 10 ? ? 1.613 1.529 0.084 0.010 N 30 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.584 1.519 0.065 0.010 N 31 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.341 1.418 -0.077 0.012 N 32 1 C4 B DC 11 ? ? N4 B DC 11 ? ? 1.405 1.335 0.070 0.009 N 33 1 N1 B DC 11 ? ? C6 B DC 11 ? ? 1.412 1.367 0.045 0.006 N 34 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.437 1.335 0.102 0.007 N 35 1 "O3'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.366 1.419 -0.053 0.006 N 36 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.335 1.391 -0.056 0.007 N 37 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.239 1.341 -0.102 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 99.44 104.50 -5.06 0.40 N 2 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 120.94 109.80 11.14 1.10 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.82 108.30 3.52 0.30 N 4 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.60 119.90 4.70 0.50 N 5 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.83 121.90 -5.07 0.40 N 6 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.71 118.90 3.81 0.60 N 7 1 "O3'" A DC 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 116.74 104.00 12.74 1.90 Y 8 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 104.20 109.40 -5.20 0.80 N 9 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 108.32 120.90 -12.58 1.60 N 10 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 98.72 104.50 -5.78 0.40 N 11 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 117.57 110.30 7.27 0.70 N 12 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 97.75 102.20 -4.45 0.70 N 13 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 85.09 105.90 -20.81 0.80 N 14 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 118.11 108.30 9.81 0.30 N 15 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.23 125.10 -6.87 0.60 N 16 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.20 123.90 5.30 0.60 N 17 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.37 111.50 6.87 0.50 N 18 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 100.72 104.30 -3.58 0.50 N 19 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 117.05 113.10 3.95 0.50 N 20 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.46 106.40 -2.94 0.40 N 21 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.67 119.90 -10.23 0.70 N 22 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 112.04 119.90 -7.86 0.60 N 23 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 100.65 103.90 -3.25 0.50 N 24 1 N7 A DA 3 ? ? C8 A DA 3 ? ? N9 A DA 3 ? ? 116.89 113.80 3.09 0.50 N 25 1 "O3'" A DA 3 ? ? P A DT 4 ? ? "O5'" A DT 4 ? ? 116.70 104.00 12.70 1.90 Y 26 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP1 A DT 4 ? ? 90.20 105.70 -15.50 0.90 N 27 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 99.62 109.40 -9.78 0.80 N 28 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 97.05 105.90 -8.85 0.80 N 29 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C6 A DT 4 ? ? 121.69 118.00 3.69 0.60 N 30 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 124.44 119.00 5.44 0.60 N 31 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 113.78 122.90 -9.12 0.60 N 32 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 107.79 120.90 -13.11 1.60 N 33 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 96.64 102.20 -5.56 0.70 N 34 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 95.40 102.40 -7.00 0.80 N 35 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.76 105.90 -5.14 0.80 N 36 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.25 108.30 3.95 0.30 N 37 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 125.84 118.90 6.94 0.60 N 38 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 124.91 120.20 4.71 0.70 N 39 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 129.25 119.70 9.55 1.20 Y 40 1 "O3'" A DC 5 ? ? P A DG 6 ? ? "O5'" A DG 6 ? ? 116.60 104.00 12.60 1.90 Y 41 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 99.79 105.70 -5.91 0.90 N 42 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.85 104.50 -2.65 0.40 N 43 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 100.06 105.90 -5.84 0.80 N 44 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.35 108.30 3.05 0.30 N 45 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 117.27 125.10 -7.83 0.60 N 46 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 131.01 123.90 7.11 0.60 N 47 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 108.25 111.90 -3.65 0.50 N 48 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.96 111.50 5.46 0.50 N 49 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 112.87 119.90 -7.03 0.70 N 50 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 114.62 119.90 -5.28 0.60 N 51 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 104.46 109.40 -4.94 0.80 N 52 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 100.98 104.50 -3.52 0.40 N 53 1 "C1'" B DC 7 ? ? "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 118.18 110.30 7.88 0.70 N 54 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? "C2'" B DC 7 ? ? 98.49 105.90 -7.41 0.80 N 55 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.41 108.30 2.11 0.30 N 56 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 123.11 119.90 3.21 0.50 N 57 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 117.88 121.90 -4.02 0.40 N 58 1 C5 B DC 7 ? ? C6 B DC 7 ? ? N1 B DC 7 ? ? 124.74 121.00 3.74 0.50 N 59 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 130.06 118.90 11.16 0.60 N 60 1 N3 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 113.14 121.90 -8.76 0.70 N 61 1 N3 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 111.12 118.00 -6.88 0.70 N 62 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 130.95 120.20 10.75 0.70 N 63 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 96.12 109.40 -13.28 0.80 N 64 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 98.48 105.90 -7.42 0.80 N 65 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 114.03 108.30 5.73 0.30 N 66 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 115.17 125.10 -9.93 0.60 N 67 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 133.34 123.90 9.44 0.60 N 68 1 C2 B DG 8 ? ? N3 B DG 8 ? ? C4 B DG 8 ? ? 106.08 111.90 -5.82 0.50 N 69 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 119.87 111.50 8.37 0.50 N 70 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 109.55 119.90 -10.35 0.70 N 71 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 112.96 119.90 -6.94 0.60 N 72 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DA 9 ? ? 132.16 119.70 12.46 1.20 Y 73 1 P B DA 9 ? ? "O5'" B DA 9 ? ? "C5'" B DA 9 ? ? 135.25 120.90 14.35 1.60 N 74 1 "O4'" B DA 9 ? ? "C4'" B DA 9 ? ? "C3'" B DA 9 ? ? 96.36 104.50 -8.14 0.40 N 75 1 "C1'" B DA 9 ? ? "O4'" B DA 9 ? ? "C4'" B DA 9 ? ? 123.20 110.30 12.90 0.70 N 76 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? "C2'" B DA 9 ? ? 98.53 105.90 -7.37 0.80 N 77 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 118.35 108.30 10.05 0.30 N 78 1 "O4'" B DT 10 ? ? "C4'" B DT 10 ? ? "C3'" B DT 10 ? ? 100.97 104.50 -3.53 0.40 N 79 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? "C2'" B DT 10 ? ? 100.05 105.90 -5.85 0.80 N 80 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 110.96 108.30 2.66 0.30 N 81 1 C2 B DT 10 ? ? N3 B DT 10 ? ? C4 B DT 10 ? ? 122.40 127.20 -4.80 0.60 N 82 1 N3 B DT 10 ? ? C4 B DT 10 ? ? C5 B DT 10 ? ? 119.52 115.20 4.32 0.60 N 83 1 C5 B DT 10 ? ? C4 B DT 10 ? ? O4 B DT 10 ? ? 120.18 124.90 -4.72 0.70 N 84 1 C4 B DT 10 ? ? C5 B DT 10 ? ? C7 B DT 10 ? ? 124.70 119.00 5.70 0.60 N 85 1 C6 B DT 10 ? ? C5 B DT 10 ? ? C7 B DT 10 ? ? 118.92 122.90 -3.98 0.60 N 86 1 "C3'" B DT 10 ? ? "O3'" B DT 10 ? ? P B DC 11 ? ? 135.79 119.70 16.09 1.20 Y 87 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 118.58 108.30 10.28 0.30 N 88 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 113.80 117.40 -3.60 0.50 N 89 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 124.97 121.00 3.97 0.50 N 90 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 124.88 118.90 5.98 0.60 N 91 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 113.56 118.00 -4.44 0.70 N 92 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 124.82 120.20 4.62 0.70 N 93 1 C2 B DC 11 ? ? N1 B DC 11 ? ? "C1'" B DC 11 ? ? 110.69 118.80 -8.11 1.10 N 94 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 130.03 119.70 10.33 1.20 Y 95 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 128.99 119.60 9.39 1.50 N 96 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 97.05 104.50 -7.45 0.40 N 97 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 117.04 109.80 7.24 1.10 N 98 1 "C1'" B DG 12 ? ? "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 118.40 110.30 8.10 0.70 N 99 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? 94.20 109.70 -15.50 2.50 N 100 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 117.94 125.10 -7.16 0.60 N 101 1 C4 B DG 12 ? ? C5 B DG 12 ? ? C6 B DG 12 ? ? 113.61 118.80 -5.19 0.60 N 102 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 121.18 111.50 9.68 0.50 N 103 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 115.60 110.80 4.80 0.40 N 104 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 100.35 104.30 -3.95 0.50 N 105 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 101.50 105.40 -3.90 0.40 N 106 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 130.93 126.00 4.93 0.60 N 107 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 119.22 128.60 -9.38 0.60 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1B _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id 44D _pdbx_validate_chiral.auth_seq_id 41 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'intercalation, minor groove binder' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 44D C1 C Y N 1 44D C2 C Y N 2 44D C3 C Y N 3 44D C4 C Y N 4 44D C5 C N N 5 44D C6 C Y N 6 44D C7 C N S 7 44D C8 C N N 8 44D C9 C N S 9 44D C10 C N N 10 44D C11 C Y N 11 44D C12 C N N 12 44D C13 C N N 13 44D C14 C N N 14 44D C15 C Y N 15 44D C16 C Y N 16 44D C17 C Y N 17 44D C18 C Y N 18 44D C19 C Y N 19 44D C20 C Y N 20 44D O5 O N N 21 44D O6 O N N 22 44D O7 O N N 23 44D O9 O N N 24 44D O11 O N N 25 44D O12 O N N 26 44D O13 O N N 27 44D O14 O N N 28 44D C1B C N R 29 44D C2B C N N 30 44D C3B C N S 31 44D C4B C N S 32 44D C5B C N S 33 44D C6B C N N 34 44D "O3'" O N N 35 44D O4B O N N 36 44D O5B O N N 37 44D "C1'" C N S 38 44D "C2'" C N N 39 44D "C3'" C N S 40 44D "C4'" C N S 41 44D "C5'" C N S 42 44D "C6'" C N N 43 44D "O4'" O N N 44 44D "O5'" O N N 45 44D "N3'" N N N 46 44D HC1 H N N 47 44D HC2 H N N 48 44D HC3 H N N 49 44D HC4 H N N 50 44D HC7 H N N 51 44D HC81 H N N 52 44D HC82 H N N 53 44D H101 H N N 54 44D H102 H N N 55 44D H141 H N N 56 44D H142 H N N 57 44D HO6 H N N 58 44D HO9 H N N 59 44D H11 H N N 60 44D H14 H N N 61 44D H1B H N N 62 44D "H2'1" H N N 63 44D "H2'2" H N N 64 44D H3B H N N 65 44D H4B H N N 66 44D H5B H N N 67 44D "H6'1" H N N 68 44D "H6'2" H N N 69 44D "H6'3" H N N 70 44D "H3'O" H N N 71 44D "H1'" H N N 72 44D H2B H N N 73 44D H2D H N N 74 44D "H3'" H N N 75 44D "H4'" H N N 76 44D "H5'" H N N 77 44D H6B H N N 78 44D H6D H N N 79 44D H6E H N N 80 44D "H4'O" H N N 81 44D "H3'1" H N N 82 44D "H3'2" H N N 83 DA OP3 O N N 84 DA P P N N 85 DA OP1 O N N 86 DA OP2 O N N 87 DA "O5'" O N N 88 DA "C5'" C N N 89 DA "C4'" C N R 90 DA "O4'" O N N 91 DA "C3'" C N S 92 DA "O3'" O N N 93 DA "C2'" C N N 94 DA "C1'" C N R 95 DA N9 N Y N 96 DA C8 C Y N 97 DA N7 N Y N 98 DA C5 C Y N 99 DA C6 C Y N 100 DA N6 N N N 101 DA N1 N Y N 102 DA C2 C Y N 103 DA N3 N Y N 104 DA C4 C Y N 105 DA HOP3 H N N 106 DA HOP2 H N N 107 DA "H5'" H N N 108 DA "H5''" H N N 109 DA "H4'" H N N 110 DA "H3'" H N N 111 DA "HO3'" H N N 112 DA "H2'" H N N 113 DA "H2''" H N N 114 DA "H1'" H N N 115 DA H8 H N N 116 DA H61 H N N 117 DA H62 H N N 118 DA H2 H N N 119 DC OP3 O N N 120 DC P P N N 121 DC OP1 O N N 122 DC OP2 O N N 123 DC "O5'" O N N 124 DC "C5'" C N N 125 DC "C4'" C N R 126 DC "O4'" O N N 127 DC "C3'" C N S 128 DC "O3'" O N N 129 DC "C2'" C N N 130 DC "C1'" C N R 131 DC N1 N N N 132 DC C2 C N N 133 DC O2 O N N 134 DC N3 N N N 135 DC C4 C N N 136 DC N4 N N N 137 DC C5 C N N 138 DC C6 C N N 139 DC HOP3 H N N 140 DC HOP2 H N N 141 DC "H5'" H N N 142 DC "H5''" H N N 143 DC "H4'" H N N 144 DC "H3'" H N N 145 DC "HO3'" H N N 146 DC "H2'" H N N 147 DC "H2''" H N N 148 DC "H1'" H N N 149 DC H41 H N N 150 DC H42 H N N 151 DC H5 H N N 152 DC H6 H N N 153 DG OP3 O N N 154 DG P P N N 155 DG OP1 O N N 156 DG OP2 O N N 157 DG "O5'" O N N 158 DG "C5'" C N N 159 DG "C4'" C N R 160 DG "O4'" O N N 161 DG "C3'" C N S 162 DG "O3'" O N N 163 DG "C2'" C N N 164 DG "C1'" C N R 165 DG N9 N Y N 166 DG C8 C Y N 167 DG N7 N Y N 168 DG C5 C Y N 169 DG C6 C N N 170 DG O6 O N N 171 DG N1 N N N 172 DG C2 C N N 173 DG N2 N N N 174 DG N3 N N N 175 DG C4 C Y N 176 DG HOP3 H N N 177 DG HOP2 H N N 178 DG "H5'" H N N 179 DG "H5''" H N N 180 DG "H4'" H N N 181 DG "H3'" H N N 182 DG "HO3'" H N N 183 DG "H2'" H N N 184 DG "H2''" H N N 185 DG "H1'" H N N 186 DG H8 H N N 187 DG H1 H N N 188 DG H21 H N N 189 DG H22 H N N 190 DT OP3 O N N 191 DT P P N N 192 DT OP1 O N N 193 DT OP2 O N N 194 DT "O5'" O N N 195 DT "C5'" C N N 196 DT "C4'" C N R 197 DT "O4'" O N N 198 DT "C3'" C N S 199 DT "O3'" O N N 200 DT "C2'" C N N 201 DT "C1'" C N R 202 DT N1 N N N 203 DT C2 C N N 204 DT O2 O N N 205 DT N3 N N N 206 DT C4 C N N 207 DT O4 O N N 208 DT C5 C N N 209 DT C7 C N N 210 DT C6 C N N 211 DT HOP3 H N N 212 DT HOP2 H N N 213 DT "H5'" H N N 214 DT "H5''" H N N 215 DT "H4'" H N N 216 DT "H3'" H N N 217 DT "HO3'" H N N 218 DT "H2'" H N N 219 DT "H2''" H N N 220 DT "H1'" H N N 221 DT H3 H N N 222 DT H71 H N N 223 DT H72 H N N 224 DT H73 H N N 225 DT H6 H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 44D C1 C2 doub Y N 1 44D C1 C15 sing Y N 2 44D C1 HC1 sing N N 3 44D C2 C3 sing Y N 4 44D C2 HC2 sing N N 5 44D C3 C4 doub Y N 6 44D C3 HC3 sing N N 7 44D C4 C16 sing Y N 8 44D C4 HC4 sing N N 9 44D C5 C16 sing N N 10 44D C5 C17 sing N N 11 44D C5 O5 doub N N 12 44D C6 C17 doub Y N 13 44D C6 C20 sing Y N 14 44D C6 O6 sing N N 15 44D C7 C8 sing N N 16 44D C7 C20 sing N N 17 44D C7 O7 sing N N 18 44D C7 HC7 sing N N 19 44D C8 C9 sing N N 20 44D C8 HC81 sing N N 21 44D C8 HC82 sing N N 22 44D C9 C10 sing N N 23 44D C9 C13 sing N N 24 44D C9 O9 sing N N 25 44D C10 C19 sing N N 26 44D C10 H101 sing N N 27 44D C10 H102 sing N N 28 44D C11 C18 doub Y N 29 44D C11 C19 sing Y N 30 44D C11 O11 sing N N 31 44D C12 C15 sing N N 32 44D C12 C18 sing N N 33 44D C12 O12 doub N N 34 44D C13 C14 sing N N 35 44D C13 O13 doub N N 36 44D C14 O14 sing N N 37 44D C14 H141 sing N N 38 44D C14 H142 sing N N 39 44D C15 C16 doub Y N 40 44D C17 C18 sing Y N 41 44D C19 C20 doub Y N 42 44D O6 HO6 sing N N 43 44D O7 C1B sing N N 44 44D O9 HO9 sing N N 45 44D O11 H11 sing N N 46 44D O14 H14 sing N N 47 44D C1B C2B sing N N 48 44D C1B O5B sing N N 49 44D C1B H1B sing N N 50 44D C2B C3B sing N N 51 44D C2B "H2'1" sing N N 52 44D C2B "H2'2" sing N N 53 44D C3B C4B sing N N 54 44D C3B "O3'" sing N N 55 44D C3B H3B sing N N 56 44D C4B C5B sing N N 57 44D C4B O4B sing N N 58 44D C4B H4B sing N N 59 44D C5B C6B sing N N 60 44D C5B O5B sing N N 61 44D C5B H5B sing N N 62 44D C6B "H6'1" sing N N 63 44D C6B "H6'2" sing N N 64 44D C6B "H6'3" sing N N 65 44D "O3'" "H3'O" sing N N 66 44D O4B "C1'" sing N N 67 44D "C1'" "C2'" sing N N 68 44D "C1'" "O5'" sing N N 69 44D "C1'" "H1'" sing N N 70 44D "C2'" "C3'" sing N N 71 44D "C2'" H2B sing N N 72 44D "C2'" H2D sing N N 73 44D "C3'" "C4'" sing N N 74 44D "C3'" "N3'" sing N N 75 44D "C3'" "H3'" sing N N 76 44D "C4'" "C5'" sing N N 77 44D "C4'" "O4'" sing N N 78 44D "C4'" "H4'" sing N N 79 44D "C5'" "C6'" sing N N 80 44D "C5'" "O5'" sing N N 81 44D "C5'" "H5'" sing N N 82 44D "C6'" H6B sing N N 83 44D "C6'" H6D sing N N 84 44D "C6'" H6E sing N N 85 44D "O4'" "H4'O" sing N N 86 44D "N3'" "H3'1" sing N N 87 44D "N3'" "H3'2" sing N N 88 DA OP3 P sing N N 89 DA OP3 HOP3 sing N N 90 DA P OP1 doub N N 91 DA P OP2 sing N N 92 DA P "O5'" sing N N 93 DA OP2 HOP2 sing N N 94 DA "O5'" "C5'" sing N N 95 DA "C5'" "C4'" sing N N 96 DA "C5'" "H5'" sing N N 97 DA "C5'" "H5''" sing N N 98 DA "C4'" "O4'" sing N N 99 DA "C4'" "C3'" sing N N 100 DA "C4'" "H4'" sing N N 101 DA "O4'" "C1'" sing N N 102 DA "C3'" "O3'" sing N N 103 DA "C3'" "C2'" sing N N 104 DA "C3'" "H3'" sing N N 105 DA "O3'" "HO3'" sing N N 106 DA "C2'" "C1'" sing N N 107 DA "C2'" "H2'" sing N N 108 DA "C2'" "H2''" sing N N 109 DA "C1'" N9 sing N N 110 DA "C1'" "H1'" sing N N 111 DA N9 C8 sing Y N 112 DA N9 C4 sing Y N 113 DA C8 N7 doub Y N 114 DA C8 H8 sing N N 115 DA N7 C5 sing Y N 116 DA C5 C6 sing Y N 117 DA C5 C4 doub Y N 118 DA C6 N6 sing N N 119 DA C6 N1 doub Y N 120 DA N6 H61 sing N N 121 DA N6 H62 sing N N 122 DA N1 C2 sing Y N 123 DA C2 N3 doub Y N 124 DA C2 H2 sing N N 125 DA N3 C4 sing Y N 126 DC OP3 P sing N N 127 DC OP3 HOP3 sing N N 128 DC P OP1 doub N N 129 DC P OP2 sing N N 130 DC P "O5'" sing N N 131 DC OP2 HOP2 sing N N 132 DC "O5'" "C5'" sing N N 133 DC "C5'" "C4'" sing N N 134 DC "C5'" "H5'" sing N N 135 DC "C5'" "H5''" sing N N 136 DC "C4'" "O4'" sing N N 137 DC "C4'" "C3'" sing N N 138 DC "C4'" "H4'" sing N N 139 DC "O4'" "C1'" sing N N 140 DC "C3'" "O3'" sing N N 141 DC "C3'" "C2'" sing N N 142 DC "C3'" "H3'" sing N N 143 DC "O3'" "HO3'" sing N N 144 DC "C2'" "C1'" sing N N 145 DC "C2'" "H2'" sing N N 146 DC "C2'" "H2''" sing N N 147 DC "C1'" N1 sing N N 148 DC "C1'" "H1'" sing N N 149 DC N1 C2 sing N N 150 DC N1 C6 sing N N 151 DC C2 O2 doub N N 152 DC C2 N3 sing N N 153 DC N3 C4 doub N N 154 DC C4 N4 sing N N 155 DC C4 C5 sing N N 156 DC N4 H41 sing N N 157 DC N4 H42 sing N N 158 DC C5 C6 doub N N 159 DC C5 H5 sing N N 160 DC C6 H6 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 # _ndb_struct_conf_na.entry_id 1NAB _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 0.118 -0.047 0.210 10.799 1.895 -4.238 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 -0.518 0.159 -0.372 -27.109 -3.273 2.793 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DA 3 1_555 B DT 4 1_555 0.036 -0.013 -0.303 -10.264 -14.101 -6.113 3 A_DA3:DT10_B A 3 ? B 10 ? 20 1 1 A DT 4 1_555 B DA 3 1_555 -0.210 0.125 0.060 0.178 -4.705 -3.415 4 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.226 0.050 -0.444 12.828 7.737 -1.980 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 -0.023 0.132 0.176 -2.753 -1.135 -0.927 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 1.275 1.096 7.308 2.460 1.137 36.039 1.406 -1.274 7.406 1.835 -3.969 36.138 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DA 3 1_555 B DT 4 1_555 -1.945 0.959 3.056 -4.481 -1.260 33.698 1.835 2.633 3.243 -2.161 7.683 34.009 2 AA_DG2DA3:DT10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DA 3 1_555 B DT 4 1_555 A DT 4 1_555 B DA 3 1_555 0.135 -0.624 3.156 -1.434 0.683 28.571 -1.412 -0.585 3.130 1.383 2.903 28.614 3 AA_DA3DT4:DA9DT10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 3 1_555 A DC 5 1_555 B DG 2 1_555 1.662 1.084 3.136 7.525 3.630 32.981 1.256 -1.600 3.515 6.269 -12.997 33.994 4 AA_DT4DC5:DG8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -1.104 0.920 6.939 -4.851 -0.004 30.579 1.726 0.055 7.026 -0.008 9.126 30.953 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 1NAB _atom_sites.fract_transf_matrix[1][1] 0.026446 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026446 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015868 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_