HEADER IMMUNE SYSTEM 28-NOV-02 1NAM TITLE MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX CAVEAT 1NAM NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 NAG C 2 HAS WRONG CAVEAT 2 1NAM CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BM3.3 T CELL RECEPTOR ALPHA-CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FV FRAGMENT, VARIABLE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BM3.3 T CELL RECEPTOR BETA-CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: FV FRAGMENT, VARIABLE DOMAIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN COMPND 13 PRECURSOR; COMPND 14 CHAIN: H; COMPND 15 FRAGMENT: EXTRACELLULAR DOMAINS (ALPHA1, ALPHA2, ALPHA3); COMPND 16 SYNONYM: H-2KB; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: NUCLEOCAPSID; COMPND 20 CHAIN: P; COMPND 21 FRAGMENT: VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN FRAGMENT, RESIDUES COMPND 22 (52-59); COMPND 23 SYNONYM: NUCLEOPROTEIN; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 27 CHAIN: L; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM_CELL: MYELOMA CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM_CELL: MYELOMA CELLS; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 GENE: H2-K; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 4; SOURCE 25 SYNTHETIC: YES; SOURCE 26 OTHER_DETAILS: THE 8-RESIDUE PEPTIDE OF VESICULAR STOMATITIS VIRUS SOURCE 27 WAS CHEMICALLY SYNTHESIZED.; SOURCE 28 MOL_ID: 5; SOURCE 29 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 30 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 31 ORGANISM_TAXID: 10090; SOURCE 32 GENE: B2M; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, CLASS I MHC, H-2KB, TCR-PMHC COMPLEX, KEYWDS 2 ALLOREACTIVITY, CROSSREACTIVITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-B.REISER,C.DARNAULT,C.GREGOIRE,T.MOSSER,G.MAZZA,A.KEARNAY,P.A.VAN AUTHOR 2 DER MERWE,J.C.FONTECILLA-CAMPS,D.HOUSSET,B.MALISSEN REVDAT 6 06-NOV-24 1NAM 1 REMARK REVDAT 5 16-AUG-23 1NAM 1 HETSYN REVDAT 4 29-JUL-20 1NAM 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE ATOM REVDAT 3 13-JUL-11 1NAM 1 VERSN REVDAT 2 24-FEB-09 1NAM 1 VERSN REVDAT 1 11-MAR-03 1NAM 0 JRNL AUTH J.-B.REISER,C.DARNAULT,C.GREGOIRE,T.MOSSER,G.MAZZA, JRNL AUTH 2 A.KEARNAY,P.A.VAN DER MERWE,J.C.FONTECILLA-CAMPS,D.HOUSSET, JRNL AUTH 3 B.MALISSEN JRNL TITL CDR3 LOOP FLEXIBILITY CONTRIBUTES TO THE DEGENERACY OF TCR JRNL TITL 2 RECOGNITION JRNL REF NAT.IMMUNOL. V. 4 241 2003 JRNL REFN ISSN 1529-2908 JRNL PMID 12563259 JRNL DOI 10.1038/NI891 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-B.REISER,C.DARNAULT,A.GUIMEZANES,C.GREGOIRE,T.MOSSER, REMARK 1 AUTH 2 A.-M.SCHMITT-VERHULST,J.C.FONTECILLA-CAMPS,B.MALISSEN, REMARK 1 AUTH 3 D.HOUSSET,G.MAZZA REMARK 1 TITL CRYSTAL STRUCTURE OF A T CELL RECEPTOR BOUND TO AN REMARK 1 TITL 2 ALLOGENEIC MHC MOLECULE REMARK 1 REF NAT.IMMUNOL. V. 1 291 2000 REMARK 1 REFN ISSN 1529-2908 REMARK 1 DOI 10.1038/79728 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.-B.REISER,C.GREGOIRE,C.DARNAULT,T.MOSSER,A.GUIMEZANES, REMARK 1 AUTH 2 A.-M.SCHMITT-VERHULST,J.C.FONTECILLA-CAMPS,G.MAZZA, REMARK 1 AUTH 3 B.MALISSEN,D.HOUSSET REMARK 1 TITL A T-CELL RECEPTOR CDR3BETA LOOP UNDERGOES CONFORMATIONAL REMARK 1 TITL 2 CHANGES OF UNPRECEDENTED MAGNITUDE UPON BINDING TO A REMARK 1 TITL 3 PEPTIDE/MHC CLASS I COMPLEX REMARK 1 REF IMMUNITY V. 16 345 2002 REMARK 1 REFN ISSN 1074-7613 REMARK 1 DOI 10.1016/S1074-7613(02)00288-1 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.H.FREMONT,M.MATSUMURA,E.A.STURA,P.A.PETERSON,I.A.WILSON REMARK 1 TITL CRYSTAL STRUCTURES OF TWO VIRAL PEPTIDES IN COMPLEX WITH REMARK 1 TITL 2 MURINE MHC CLASS I H-2KB REMARK 1 REF SCIENCE V. 257 919 1992 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 25666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2879 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -3.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.010 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : 1.274 ; 1.947 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000 13-17%, MGAC 0.1M, NACL 0 REMARK 280 -0.1M, HEPES 0.1M, PH 7.0 TO 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.68000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 151.02000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.34000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 151.02000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.34000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, P, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO H 235 OH TYR L 10 1.84 REMARK 500 NH2 ARG H 6 OE2 GLU H 102 2.12 REMARK 500 O CYS L 80 OG1 THR L 92 2.14 REMARK 500 O GLN H 255 NH1 ARG H 273 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 72 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -7.18 68.90 REMARK 500 LYS A 54 43.03 -98.08 REMARK 500 ILE A 73 82.02 -151.92 REMARK 500 ALA A 79 75.18 58.78 REMARK 500 ALA A 86 -169.86 -169.64 REMARK 500 ASP A 96 127.25 7.50 REMARK 500 SER A 100 -49.78 -13.86 REMARK 500 ARG B 15 131.17 -39.89 REMARK 500 LYS B 58 117.34 -165.14 REMARK 500 LEU H 17 38.51 -98.08 REMARK 500 PRO H 20 123.35 -37.07 REMARK 500 ASP H 29 32.73 37.12 REMARK 500 ASN H 42 74.78 64.75 REMARK 500 GLN H 54 27.91 -67.54 REMARK 500 GLN H 114 118.48 -165.17 REMARK 500 ARG H 169 43.47 -70.45 REMARK 500 ARG H 170 -40.10 -149.56 REMARK 500 ARG H 181 -165.32 -114.05 REMARK 500 THR H 182 158.14 174.12 REMARK 500 HIS H 188 137.10 -174.63 REMARK 500 HIS H 192 38.66 -145.14 REMARK 500 PRO H 195 73.22 -16.34 REMARK 500 LEU H 219 46.35 -86.99 REMARK 500 ASN H 220 80.86 57.12 REMARK 500 LEU H 224 33.90 -99.26 REMARK 500 GLN H 226 -51.21 -138.23 REMARK 500 GLU H 254 -37.61 -141.93 REMARK 500 TYR L 10 147.95 179.56 REMARK 500 GLU L 16 108.63 169.15 REMARK 500 ASN L 21 -127.09 -145.00 REMARK 500 HIS L 31 130.23 -172.16 REMARK 500 LEU L 40 -139.14 -83.05 REMARK 500 LYS L 41 88.40 156.13 REMARK 500 ASN L 42 -40.02 75.83 REMARK 500 LYS L 44 -110.24 -123.06 REMARK 500 LYS L 48 63.50 -113.54 REMARK 500 VAL L 49 88.45 -62.13 REMARK 500 GLU L 50 20.99 -76.47 REMARK 500 MET L 51 115.65 -14.93 REMARK 500 LYS L 58 -27.35 -36.13 REMARK 500 TRP L 60 -1.60 82.79 REMARK 500 THR L 68 -148.75 -174.12 REMARK 500 PRO L 72 141.04 -35.58 REMARK 500 GLU L 74 -119.94 -104.80 REMARK 500 ASP L 76 63.49 -103.66 REMARK 500 ASP L 85 -6.75 -55.43 REMARK 500 THR L 92 143.30 -173.80 REMARK 500 TRP L 95 -179.51 -44.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FO0 RELATED DB: PDB REMARK 900 GRP1 PH DOMAIN WITH INS(1,3,4,5)P4 REMARK 900 RELATED ID: 1KJ3 RELATED DB: PDB REMARK 900 MHC CLASS I H-2KB MOLECULE COMPLEXED WITH PKB1 PEPTIDE REMARK 900 RELATED ID: 2VAA RELATED DB: PDB REMARK 900 MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH -2 MICROGLOBULIN AND REMARK 900 VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN REMARK 999 REMARK 999 SEQUENCE AUTHOR STATES THE SEQUENCE OF THE BM3.3 TCR HAS NEVER REMARK 999 BEEN DEPOSITED IN ANY DATABASE, HOWEVER IT HAS BEEN PUBLISHED IN REMARK 999 THE FOLLOWING PAPER: COUEZ D, MALISSEN M, BUFERNE M, SCHMITT- REMARK 999 VERHULST AM, MALISSEN B. (1991) EACH OF THE TWO PRODUCTIVE T REMARK 999 CELL RECEPTOR ALPHA-GENE REARRANGEMENTS FOUND IN BOTH THE A10 REMARK 999 AND BM 3.3 T CELL CLONES GIVE RISE TO AN ALPHA CHAIN WHICH CAN REMARK 999 CONTRIBUTE TO THE CONSTITUTION OF A SURFACE-EXPRESSED ALPHA BETA REMARK 999 DIMER. INT IMMUNOL. 3(7):719-29. MOREOVER, TCR SEQUENCES ARE THE REMARK 999 RESULT OF V,J AND C GENES RECOMBINATION FOR THE ALPHA CHAIN, V, REMARK 999 D, J, C GENES RECOMBINATION FOR THE BETA CHAIN. THE BM3.3 TCR REMARK 999 VARIABLE DOMAIN IS MADE OF THE FOLLOWING SEGMENTS: TRAV16*01, REMARK 999 TRAJ32 FOR THE VALPHA AND JALPHA SEGMENTS (CHAIN A) TRBV1*01, REMARK 999 TRBJ1-3*01 FOR THE VBETA, JBETA SEGMENTS (CHAIN B). AUTHOR REMARK 999 STATES THE TCR VARIABLE DOMAIN IS PRODUCED AS A SINGLE CHAIN FV REMARK 999 FRAGMENT. THE VALPHA DOMAIN (CHAIN A) C-TERMINUS IS ARTIFICIALLY REMARK 999 CONNECTED TO THE VBETA DOMAIN (CHAIN B) N-TERMINUS BY THE MEAN REMARK 999 OF A FLEXIBLE HYDROPHILIC LINKER (SEQUENCE REMARK 999 GSADDASADDAKKDAAKKDDAKKDDAKKDGS) FOR WICH NO ELECTRON DENSITY IS REMARK 999 OBSERVED. SINCE THIS LINKER HAS NO BIOLOGICAL ROLE AND DOES NOT REMARK 999 INTERFERE WITH TCR RECOGNITION, IT HAS NOT BEEN INCORPORATED IN REMARK 999 THE MODEL AND THE SEQUENCE RECORD. DBREF 1NAM H 1 275 UNP P01901 HA1B_MOUSE 22 296 DBREF 1NAM P 1 8 UNP P11212 NCAP_VSVIG 52 59 DBREF 1NAM L 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 1NAM A 1 116 PDB 1NAM 1NAM 1 116 DBREF 1NAM B 1 116A PDB 1NAM 1NAM 1 116 SEQADV 1NAM MET L 0 UNP P01887 CLONING ARTIFACT SEQRES 1 A 116 GLN LYS VAL THR GLN THR GLN THR SER ILE SER VAL MET SEQRES 2 A 116 GLU LYS THR THR VAL THR MET ASP CYS VAL TYR GLU THR SEQRES 3 A 116 GLN ASP SER SER TYR PHE LEU PHE TRP TYR LYS GLN THR SEQRES 4 A 116 ALA SER GLY GLU ILE VAL PHE LEU ILE ARG GLN ASP SER SEQRES 5 A 116 TYR LYS LYS GLU ASN ALA THR VAL GLY HIS TYR SER LEU SEQRES 6 A 116 ASN PHE GLN LYS PRO LYS SER SER ILE GLY LEU ILE ILE SEQRES 7 A 116 THR ALA THR GLN ILE GLU ASP SER ALA VAL TYR PHE CYS SEQRES 8 A 116 ALA MET ARG GLY ASP TYR GLY GLY SER GLY ASN LYS LEU SEQRES 9 A 116 ILE PHE GLY THR GLY THR LEU LEU SER VAL LYS PRO SEQRES 1 B 113 VAL THR LEU LEU GLU GLN ASN PRO ARG TRP ARG LEU VAL SEQRES 2 B 113 PRO ARG GLY GLN ALA VAL ASN LEU ARG CYS ILE LEU LYS SEQRES 3 B 113 ASN SER GLN TYR PRO TRP MET SER TRP TYR GLN GLN ASP SEQRES 4 B 113 LEU GLN LYS GLN LEU GLN TRP LEU PHE THR LEU ARG SER SEQRES 5 B 113 PRO GLY ASP LYS GLU VAL LYS SER LEU PRO GLY ALA ASP SEQRES 6 B 113 TYR LEU ALA THR ARG VAL THR ASP THR GLU LEU ARG LEU SEQRES 7 B 113 GLN VAL ALA ASN MET SER GLN GLY ARG THR LEU TYR CYS SEQRES 8 B 113 THR CYS SER ALA ASP ARG VAL GLY ASN THR LEU TYR PHE SEQRES 9 B 113 GLY GLU GLY SER ARG LEU ILE VAL VAL SEQRES 1 H 275 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 H 275 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 H 275 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 H 275 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 H 275 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 H 275 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 H 275 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 H 275 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 H 275 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 H 275 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 H 275 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 H 275 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 H 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 H 275 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 H 275 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 H 275 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 H 275 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 H 275 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 H 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 H 275 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 H 275 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 H 275 TRP GLU SEQRES 1 P 8 ARG GLY TYR VAL TYR GLN GLY LEU SEQRES 1 L 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 L 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 L 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 L 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 L 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 L 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 L 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 L 100 LYS THR VAL TYR TRP ASP ARG ASP MET MODRES 1NAM ASN A 56 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 6 NAG 2(C8 H15 N O6) FORMUL 7 HOH *101(H2 O) HELIX 1 1 LYS A 68 SER A 71 5 4 HELIX 2 2 GLN A 81 SER A 85 5 5 HELIX 3 3 ALA H 49 GLU H 53 5 5 HELIX 4 4 GLY H 56 TYR H 85 1 30 HELIX 5 5 ASP H 137 ALA H 150 1 14 HELIX 6 6 GLY H 151 GLY H 162 1 12 HELIX 7 7 GLY H 162 LEU H 180 1 19 SHEET 1 A 2 VAL A 3 THR A 4 0 SHEET 2 A 2 VAL A 23 TYR A 24 -1 O VAL A 23 N THR A 4 SHEET 1 B 4 ILE A 43 ASP A 50 0 SHEET 2 B 4 PHE A 31 GLN A 37 -1 N LYS A 36 O VAL A 44 SHEET 3 B 4 ALA A 86 ARG A 93 -1 O ALA A 91 N PHE A 33 SHEET 4 B 4 LEU A 104 PHE A 106 -1 O ILE A 105 N MET A 92 SHEET 1 C 5 ILE A 43 ASP A 50 0 SHEET 2 C 5 PHE A 31 GLN A 37 -1 N LYS A 36 O VAL A 44 SHEET 3 C 5 ALA A 86 ARG A 93 -1 O ALA A 91 N PHE A 33 SHEET 4 C 5 THR A 110 LYS A 115 -1 O THR A 110 N TYR A 88 SHEET 5 C 5 SER A 9 MET A 13 1 N VAL A 12 O LYS A 115 SHEET 1 D 4 VAL A 18 MET A 20 0 SHEET 2 D 4 SER A 72 ILE A 77 -1 O ILE A 77 N VAL A 18 SHEET 3 D 4 TYR A 62 GLN A 67 -1 N SER A 63 O ILE A 76 SHEET 4 D 4 THR A 58 VAL A 59 -1 N VAL A 59 O TYR A 62 SHEET 1 E 5 LEU B 4 ASN B 7 0 SHEET 2 E 5 VAL B 19 LEU B 25 -1 O ILE B 24 N GLU B 5 SHEET 3 E 5 GLU B 74 ALA B 80 -1 O LEU B 75 N CYS B 23 SHEET 4 E 5 ALA B 63 ARG B 69 -1 N THR B 68 O ARG B 76 SHEET 5 E 5 LYS B 55 LEU B 60 -1 N GLU B 56 O ALA B 67 SHEET 1 F 4 LEU B 43 LEU B 49 0 SHEET 2 F 4 TRP B 31 GLN B 37 -1 N MET B 32 O LEU B 49 SHEET 3 F 4 ARG B 86 SER B 95 -1 O TYR B 91 N TYR B 35 SHEET 4 F 4 TYR B 107 PHE B 108 -1 O TYR B 107 N CYS B 94 SHEET 1 G 5 LEU B 43 LEU B 49 0 SHEET 2 G 5 TRP B 31 GLN B 37 -1 N MET B 32 O LEU B 49 SHEET 3 G 5 ARG B 86 SER B 95 -1 O TYR B 91 N TYR B 35 SHEET 4 G 5 SER B 112 VAL B 116 -1 O SER B 112 N LEU B 90 SHEET 5 G 5 TRP B 10 VAL B 13 1 N VAL B 13 O ILE B 115 SHEET 1 H 8 GLU H 46 PRO H 47 0 SHEET 2 H 8 THR H 31 ASP H 37 -1 N ARG H 35 O GLU H 46 SHEET 3 H 8 ARG H 21 VAL H 28 -1 N GLY H 26 O PHE H 33 SHEET 4 H 8 HIS H 3 VAL H 12 -1 N PHE H 8 O VAL H 25 SHEET 5 H 8 THR H 94 VAL H 103 -1 O SER H 99 N TYR H 7 SHEET 6 H 8 LEU H 109 TYR H 118 -1 O LEU H 110 N GLU H 102 SHEET 7 H 8 CYS H 121 LEU H 126 -1 O TYR H 123 N TYR H 116 SHEET 8 H 8 TRP H 133 ALA H 135 -1 O THR H 134 N ALA H 125 SHEET 1 I 4 LYS H 186 HIS H 191 0 SHEET 2 I 4 LEU H 201 PHE H 208 -1 O TRP H 204 N HIS H 188 SHEET 3 I 4 PHE H 241 VAL H 247 -1 O ALA H 245 N CYS H 203 SHEET 4 I 4 GLU H 229 LEU H 230 -1 N GLU H 229 O SER H 246 SHEET 1 J 4 LYS H 186 HIS H 191 0 SHEET 2 J 4 LEU H 201 PHE H 208 -1 O TRP H 204 N HIS H 188 SHEET 3 J 4 PHE H 241 VAL H 247 -1 O ALA H 245 N CYS H 203 SHEET 4 J 4 ARG H 234 PRO H 235 -1 N ARG H 234 O GLN H 242 SHEET 1 K 3 THR H 214 GLN H 218 0 SHEET 2 K 3 THR H 258 TYR H 262 -1 O TYR H 262 N THR H 214 SHEET 3 K 3 LEU H 270 LEU H 272 -1 O LEU H 272 N CYS H 259 SHEET 1 L 4 GLN L 6 VAL L 9 0 SHEET 2 L 4 ASN L 24 PHE L 30 -1 O THR L 28 N GLN L 6 SHEET 3 L 4 PHE L 62 HIS L 67 -1 O PHE L 62 N PHE L 30 SHEET 4 L 4 SER L 55 PHE L 56 -1 N SER L 55 O TYR L 63 SHEET 1 M 2 ILE L 35 MET L 39 0 SHEET 2 M 2 CYS L 80 HIS L 84 -1 O LYS L 83 N GLU L 36 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.05 SSBOND 2 CYS B 23 CYS B 92 1555 1555 2.09 SSBOND 3 CYS H 203 CYS H 259 1555 1555 2.03 SSBOND 4 CYS L 25 CYS L 80 1555 1555 2.03 LINK ND2 ASN A 56 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 CISPEP 1 ASN B 7 PRO B 8 0 4.59 CISPEP 2 TYR H 209 PRO H 210 0 3.66 CISPEP 3 HIS L 31 PRO L 32 0 6.76 CRYST1 101.860 101.860 201.360 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004966 0.00000