data_1NB0 # _entry.id 1NB0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1NB0 RCSB RCSB017728 WWPDB D_1000017728 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1nb9 . unspecified PDB 1nbg . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NB0 _pdbx_database_status.recvd_initial_deposition_date 2002-12-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Karthikeyan, S.' 1 'Zhou, Q.' 2 'Mseeh, F.' 3 'Grishin, N.V.' 4 'Osterman, A.L.' 5 'Zhang, H.' 6 # _citation.id primary _citation.title 'Crystal Structure of Human Riboflavin Kinase Reveals a Beta Barrel Fold and a Novel Active Site Arch' _citation.journal_abbrev Structure _citation.journal_volume 11 _citation.page_first 265 _citation.page_last 273 _citation.year 2003 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12623014 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(03)00024-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Karthikeyan, S.' 1 primary 'Zhou, Q.' 2 primary 'Mseeh, F.' 3 primary 'Grishin, N.V.' 4 primary 'Osterman, A.L.' 5 primary 'Zhang, H.' 6 # _cell.entry_id 1NB0 _cell.length_a 57.096 _cell.length_b 57.096 _cell.length_c 82.505 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NB0 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein FLJ11149' 16772.084 1 2.7.1.26 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 water nat water 18.015 130 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Riboflavin kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETH IMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLELPEYLKIKEDNFFQVSK ; _entity_poly.pdbx_seq_one_letter_code_can ;RHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETH IMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLELPEYLKIKEDNFFQVSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 HIS n 1 3 LEU n 1 4 PRO n 1 5 TYR n 1 6 PHE n 1 7 CYS n 1 8 ARG n 1 9 GLY n 1 10 GLN n 1 11 VAL n 1 12 VAL n 1 13 ARG n 1 14 GLY n 1 15 PHE n 1 16 GLY n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 LYS n 1 21 GLN n 1 22 LEU n 1 23 GLY n 1 24 ILE n 1 25 PRO n 1 26 THR n 1 27 ALA n 1 28 ASN n 1 29 PHE n 1 30 PRO n 1 31 GLU n 1 32 GLN n 1 33 VAL n 1 34 VAL n 1 35 ASP n 1 36 ASN n 1 37 LEU n 1 38 PRO n 1 39 ALA n 1 40 ASP n 1 41 ILE n 1 42 SER n 1 43 THR n 1 44 GLY n 1 45 ILE n 1 46 TYR n 1 47 TYR n 1 48 GLY n 1 49 TRP n 1 50 ALA n 1 51 SER n 1 52 VAL n 1 53 GLY n 1 54 SER n 1 55 GLY n 1 56 ASP n 1 57 VAL n 1 58 HIS n 1 59 LYS n 1 60 MET n 1 61 VAL n 1 62 VAL n 1 63 SER n 1 64 ILE n 1 65 GLY n 1 66 TRP n 1 67 ASN n 1 68 PRO n 1 69 TYR n 1 70 TYR n 1 71 LYS n 1 72 ASN n 1 73 THR n 1 74 LYS n 1 75 LYS n 1 76 SER n 1 77 MET n 1 78 GLU n 1 79 THR n 1 80 HIS n 1 81 ILE n 1 82 MET n 1 83 HIS n 1 84 THR n 1 85 PHE n 1 86 LYS n 1 87 GLU n 1 88 ASP n 1 89 PHE n 1 90 TYR n 1 91 GLY n 1 92 GLU n 1 93 ILE n 1 94 LEU n 1 95 ASN n 1 96 VAL n 1 97 ALA n 1 98 ILE n 1 99 VAL n 1 100 GLY n 1 101 TYR n 1 102 LEU n 1 103 ARG n 1 104 PRO n 1 105 GLU n 1 106 LYS n 1 107 ASN n 1 108 PHE n 1 109 ASP n 1 110 SER n 1 111 LEU n 1 112 GLU n 1 113 SER n 1 114 LEU n 1 115 ILE n 1 116 SER n 1 117 ALA n 1 118 ILE n 1 119 GLN n 1 120 GLY n 1 121 ASP n 1 122 ILE n 1 123 GLU n 1 124 GLU n 1 125 ALA n 1 126 LYS n 1 127 LYS n 1 128 ARG n 1 129 LEU n 1 130 GLU n 1 131 LEU n 1 132 PRO n 1 133 GLU n 1 134 TYR n 1 135 LEU n 1 136 LYS n 1 137 ILE n 1 138 LYS n 1 139 GLU n 1 140 ASP n 1 141 ASN n 1 142 PHE n 1 143 PHE n 1 144 GLN n 1 145 VAL n 1 146 SER n 1 147 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLJ11149 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ brain _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPROEX-Hta _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIFK_HUMAN _struct_ref.pdbx_db_accession Q969G6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETH IMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLELPEHLKIKEDNFFQVSK ; _struct_ref.pdbx_align_begin 9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NB0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q969G6 _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 155 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 155 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1NB0 _struct_ref_seq_dif.mon_id TYR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 134 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q969G6 _struct_ref_seq_dif.db_mon_id HIS _struct_ref_seq_dif.pdbx_seq_db_seq_num 142 _struct_ref_seq_dif.details CONFLICT _struct_ref_seq_dif.pdbx_auth_seq_num 142 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1NB0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 39.69 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'NA cadodalyte, Mg acetate, PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2002-08-25 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ROSENBAUM-ROCK DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0080 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0080 # _reflns.entry_id 1NB0 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 17010 _reflns.number_all ? _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.036 _reflns.pdbx_netI_over_sigmaI 49.2000 _reflns.B_iso_Wilson_estimate 20.32 _reflns.pdbx_redundancy 12.470 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 83.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2 _reflns_shell.meanI_over_sigI_obs 4.300 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1NB0 _refine.ls_number_reflns_obs 15843 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.39 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 94.36 _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 861 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 15.50 _refine.aniso_B[1][1] -0.21 _refine.aniso_B[2][2] -0.21 _refine.aniso_B[3][3] 0.32 _refine.aniso_B[1][2] -0.11 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.116 _refine.pdbx_overall_ESU_R_Free 0.113 _refine.overall_SU_ML 0.075 _refine.overall_SU_B 2.264 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1177 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 1335 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 49.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 1251 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.611 1.978 ? 1693 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.017 5.000 ? 146 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 176 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 945 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.227 0.200 ? 523 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.158 0.200 ? 114 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.180 0.200 ? 42 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.158 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.042 1.500 ? 729 'X-RAY DIFFRACTION' ? r_mcangle_it 1.907 2.000 ? 1178 'X-RAY DIFFRACTION' ? r_scbond_it 2.511 3.000 ? 522 'X-RAY DIFFRACTION' ? r_scangle_it 3.779 4.500 ? 515 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.698 _refine_ls_shell.d_res_low 1.742 _refine_ls_shell.number_reflns_R_work 895 _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.243 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1NB0 _struct.title 'Crystal Structure of Human Riboflavin Kinase' _struct.pdbx_descriptor 'hypothetical protein FLJ11149 (E.C.2.7.1.26)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NB0 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'BETA BARREL, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? GLY A 23 ? GLY A 26 GLY A 31 5 ? 6 HELX_P HELX_P2 2 PRO A 30 ? ASN A 36 ? PRO A 38 ASN A 44 1 ? 7 HELX_P HELX_P3 3 SER A 110 ? LEU A 129 ? SER A 118 LEU A 137 1 ? 20 HELX_P HELX_P4 4 LEU A 131 ? LYS A 136 ? LEU A 139 LYS A 144 1 ? 6 HELX_P HELX_P5 5 ILE A 137 ? GLU A 139 ? ILE A 145 GLU A 147 5 ? 3 HELX_P HELX_P6 6 ASP A 140 ? SER A 146 ? ASP A 148 SER A 154 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B MG . MG ? ? ? 1_555 A THR 26 O ? ? A MG 201 A THR 34 1_555 ? ? ? ? ? ? ? 2.146 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 402 1_555 ? ? ? ? ? ? ? 2.074 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C ADP . O1B ? ? A MG 201 A ADP 301 1_555 ? ? ? ? ? ? ? 2.035 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 A THR 26 OG1 ? ? A MG 201 A THR 34 1_555 ? ? ? ? ? ? ? 2.144 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 408 1_555 ? ? ? ? ? ? ? 2.140 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 C ADP . O2A ? ? A MG 201 A ADP 301 1_555 ? ? ? ? ? ? ? 2.053 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 3 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 11 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 4 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 12 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.34 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 5 ? GLN A 10 ? TYR A 13 GLN A 18 A 2 ILE A 93 ? ARG A 103 ? ILE A 101 ARG A 111 A 3 GLY A 44 ? VAL A 52 ? GLY A 52 VAL A 60 A 4 HIS A 58 ? TRP A 66 ? HIS A 66 TRP A 74 A 5 LYS A 75 ? ILE A 81 ? LYS A 83 ILE A 89 A 6 ALA A 27 ? ASN A 28 ? ALA A 35 ASN A 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 9 ? N GLY A 17 O LEU A 94 ? O LEU A 102 A 2 3 O ASN A 95 ? O ASN A 103 N SER A 51 ? N SER A 59 A 3 4 N TYR A 46 ? N TYR A 54 O VAL A 62 ? O VAL A 70 A 4 5 N VAL A 61 ? N VAL A 69 O HIS A 80 ? O HIS A 88 A 5 6 O THR A 79 ? O THR A 87 N ALA A 27 ? N ALA A 35 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE ADP A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 THR A 26 ? THR A 34 . ? 1_555 ? 2 AC1 4 ADP C . ? ADP A 301 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 402 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 408 . ? 1_555 ? 5 AC2 23 VAL A 11 ? VAL A 19 . ? 1_555 ? 6 AC2 23 GLY A 14 ? GLY A 22 . ? 1_555 ? 7 AC2 23 GLY A 18 ? GLY A 26 . ? 1_555 ? 8 AC2 23 SER A 19 ? SER A 27 . ? 1_555 ? 9 AC2 23 LYS A 20 ? LYS A 28 . ? 1_555 ? 10 AC2 23 PRO A 25 ? PRO A 33 . ? 1_555 ? 11 AC2 23 THR A 26 ? THR A 34 . ? 1_555 ? 12 AC2 23 ASN A 28 ? ASN A 36 . ? 1_555 ? 13 AC2 23 THR A 79 ? THR A 87 . ? 1_555 ? 14 AC2 23 ILE A 81 ? ILE A 89 . ? 1_555 ? 15 AC2 23 HIS A 83 ? HIS A 91 . ? 1_555 ? 16 AC2 23 PHE A 85 ? PHE A 93 . ? 1_555 ? 17 AC2 23 ASP A 88 ? ASP A 96 . ? 1_555 ? 18 AC2 23 PHE A 89 ? PHE A 97 . ? 1_555 ? 19 AC2 23 TYR A 90 ? TYR A 98 . ? 1_555 ? 20 AC2 23 MG B . ? MG A 201 . ? 1_555 ? 21 AC2 23 HOH D . ? HOH A 401 . ? 1_555 ? 22 AC2 23 HOH D . ? HOH A 402 . ? 1_555 ? 23 AC2 23 HOH D . ? HOH A 406 . ? 1_555 ? 24 AC2 23 HOH D . ? HOH A 408 . ? 1_555 ? 25 AC2 23 HOH D . ? HOH A 422 . ? 1_555 ? 26 AC2 23 HOH D . ? HOH A 426 . ? 1_555 ? 27 AC2 23 HOH D . ? HOH A 452 . ? 2_655 ? # _database_PDB_matrix.entry_id 1NB0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NB0 _atom_sites.fract_transf_matrix[1][1] 0.017514 _atom_sites.fract_transf_matrix[1][2] 0.010112 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020224 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012120 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 9 9 ARG ARG A . n A 1 2 HIS 2 10 10 HIS HIS A . n A 1 3 LEU 3 11 11 LEU LEU A . n A 1 4 PRO 4 12 12 PRO PRO A . n A 1 5 TYR 5 13 13 TYR TYR A . n A 1 6 PHE 6 14 14 PHE PHE A . n A 1 7 CYS 7 15 15 CYS CYS A . n A 1 8 ARG 8 16 16 ARG ARG A . n A 1 9 GLY 9 17 17 GLY GLY A . n A 1 10 GLN 10 18 18 GLN GLN A . n A 1 11 VAL 11 19 19 VAL VAL A . n A 1 12 VAL 12 20 20 VAL VAL A . n A 1 13 ARG 13 21 21 ARG ARG A . n A 1 14 GLY 14 22 22 GLY GLY A . n A 1 15 PHE 15 23 23 PHE PHE A . n A 1 16 GLY 16 24 24 GLY GLY A . n A 1 17 ARG 17 25 25 ARG ARG A . n A 1 18 GLY 18 26 26 GLY GLY A . n A 1 19 SER 19 27 27 SER SER A . n A 1 20 LYS 20 28 28 LYS LYS A . n A 1 21 GLN 21 29 29 GLN GLN A . n A 1 22 LEU 22 30 30 LEU LEU A . n A 1 23 GLY 23 31 31 GLY GLY A . n A 1 24 ILE 24 32 32 ILE ILE A . n A 1 25 PRO 25 33 33 PRO PRO A . n A 1 26 THR 26 34 34 THR THR A . n A 1 27 ALA 27 35 35 ALA ALA A . n A 1 28 ASN 28 36 36 ASN ASN A . n A 1 29 PHE 29 37 37 PHE PHE A . n A 1 30 PRO 30 38 38 PRO PRO A . n A 1 31 GLU 31 39 39 GLU GLU A . n A 1 32 GLN 32 40 40 GLN GLN A . n A 1 33 VAL 33 41 41 VAL VAL A . n A 1 34 VAL 34 42 42 VAL VAL A . n A 1 35 ASP 35 43 43 ASP ASP A . n A 1 36 ASN 36 44 44 ASN ASN A . n A 1 37 LEU 37 45 45 LEU LEU A . n A 1 38 PRO 38 46 46 PRO PRO A . n A 1 39 ALA 39 47 47 ALA ALA A . n A 1 40 ASP 40 48 48 ASP ASP A . n A 1 41 ILE 41 49 49 ILE ILE A . n A 1 42 SER 42 50 50 SER SER A . n A 1 43 THR 43 51 51 THR THR A . n A 1 44 GLY 44 52 52 GLY GLY A . n A 1 45 ILE 45 53 53 ILE ILE A . n A 1 46 TYR 46 54 54 TYR TYR A . n A 1 47 TYR 47 55 55 TYR TYR A . n A 1 48 GLY 48 56 56 GLY GLY A . n A 1 49 TRP 49 57 57 TRP TRP A . n A 1 50 ALA 50 58 58 ALA ALA A . n A 1 51 SER 51 59 59 SER SER A . n A 1 52 VAL 52 60 60 VAL VAL A . n A 1 53 GLY 53 61 61 GLY GLY A . n A 1 54 SER 54 62 62 SER SER A . n A 1 55 GLY 55 63 63 GLY GLY A . n A 1 56 ASP 56 64 64 ASP ASP A . n A 1 57 VAL 57 65 65 VAL VAL A . n A 1 58 HIS 58 66 66 HIS HIS A . n A 1 59 LYS 59 67 67 LYS LYS A . n A 1 60 MET 60 68 68 MET MET A . n A 1 61 VAL 61 69 69 VAL VAL A . n A 1 62 VAL 62 70 70 VAL VAL A . n A 1 63 SER 63 71 71 SER SER A . n A 1 64 ILE 64 72 72 ILE ILE A . n A 1 65 GLY 65 73 73 GLY GLY A . n A 1 66 TRP 66 74 74 TRP TRP A . n A 1 67 ASN 67 75 75 ASN ASN A . n A 1 68 PRO 68 76 76 PRO PRO A . n A 1 69 TYR 69 77 77 TYR TYR A . n A 1 70 TYR 70 78 78 TYR TYR A . n A 1 71 LYS 71 79 79 LYS LYS A . n A 1 72 ASN 72 80 80 ASN ASN A . n A 1 73 THR 73 81 81 THR THR A . n A 1 74 LYS 74 82 82 LYS LYS A . n A 1 75 LYS 75 83 83 LYS LYS A . n A 1 76 SER 76 84 84 SER SER A . n A 1 77 MET 77 85 85 MET MET A . n A 1 78 GLU 78 86 86 GLU GLU A . n A 1 79 THR 79 87 87 THR THR A . n A 1 80 HIS 80 88 88 HIS HIS A . n A 1 81 ILE 81 89 89 ILE ILE A . n A 1 82 MET 82 90 90 MET MET A . n A 1 83 HIS 83 91 91 HIS HIS A . n A 1 84 THR 84 92 92 THR THR A . n A 1 85 PHE 85 93 93 PHE PHE A . n A 1 86 LYS 86 94 94 LYS LYS A . n A 1 87 GLU 87 95 95 GLU GLU A . n A 1 88 ASP 88 96 96 ASP ASP A . n A 1 89 PHE 89 97 97 PHE PHE A . n A 1 90 TYR 90 98 98 TYR TYR A . n A 1 91 GLY 91 99 99 GLY GLY A . n A 1 92 GLU 92 100 100 GLU GLU A . n A 1 93 ILE 93 101 101 ILE ILE A . n A 1 94 LEU 94 102 102 LEU LEU A . n A 1 95 ASN 95 103 103 ASN ASN A . n A 1 96 VAL 96 104 104 VAL VAL A . n A 1 97 ALA 97 105 105 ALA ALA A . n A 1 98 ILE 98 106 106 ILE ILE A . n A 1 99 VAL 99 107 107 VAL VAL A . n A 1 100 GLY 100 108 108 GLY GLY A . n A 1 101 TYR 101 109 109 TYR TYR A . n A 1 102 LEU 102 110 110 LEU LEU A . n A 1 103 ARG 103 111 111 ARG ARG A . n A 1 104 PRO 104 112 112 PRO PRO A . n A 1 105 GLU 105 113 113 GLU GLU A . n A 1 106 LYS 106 114 114 LYS LYS A . n A 1 107 ASN 107 115 115 ASN ASN A . n A 1 108 PHE 108 116 116 PHE PHE A . n A 1 109 ASP 109 117 117 ASP ASP A . n A 1 110 SER 110 118 118 SER SER A . n A 1 111 LEU 111 119 119 LEU LEU A . n A 1 112 GLU 112 120 120 GLU GLU A . n A 1 113 SER 113 121 121 SER SER A . n A 1 114 LEU 114 122 122 LEU LEU A . n A 1 115 ILE 115 123 123 ILE ILE A . n A 1 116 SER 116 124 124 SER SER A . n A 1 117 ALA 117 125 125 ALA ALA A . n A 1 118 ILE 118 126 126 ILE ILE A . n A 1 119 GLN 119 127 127 GLN GLN A . n A 1 120 GLY 120 128 128 GLY GLY A . n A 1 121 ASP 121 129 129 ASP ASP A . n A 1 122 ILE 122 130 130 ILE ILE A . n A 1 123 GLU 123 131 131 GLU GLU A . n A 1 124 GLU 124 132 132 GLU GLU A . n A 1 125 ALA 125 133 133 ALA ALA A . n A 1 126 LYS 126 134 134 LYS LYS A . n A 1 127 LYS 127 135 135 LYS LYS A . n A 1 128 ARG 128 136 136 ARG ARG A . n A 1 129 LEU 129 137 137 LEU LEU A . n A 1 130 GLU 130 138 138 GLU GLU A . n A 1 131 LEU 131 139 139 LEU LEU A . n A 1 132 PRO 132 140 140 PRO PRO A . n A 1 133 GLU 133 141 141 GLU GLU A . n A 1 134 TYR 134 142 142 TYR TYR A . n A 1 135 LEU 135 143 143 LEU LEU A . n A 1 136 LYS 136 144 144 LYS LYS A . n A 1 137 ILE 137 145 145 ILE ILE A . n A 1 138 LYS 138 146 146 LYS LYS A . n A 1 139 GLU 139 147 147 GLU GLU A . n A 1 140 ASP 140 148 148 ASP ASP A . n A 1 141 ASN 141 149 149 ASN ASN A . n A 1 142 PHE 142 150 150 PHE PHE A . n A 1 143 PHE 143 151 151 PHE PHE A . n A 1 144 GLN 144 152 152 GLN GLN A . n A 1 145 VAL 145 153 153 VAL VAL A . n A 1 146 SER 146 154 154 SER SER A . n A 1 147 LYS 147 155 155 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 402 ? 1_555 91.0 ? 2 O ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O1B ? C ADP . ? A ADP 301 ? 1_555 96.2 ? 3 O ? D HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O1B ? C ADP . ? A ADP 301 ? 1_555 92.3 ? 4 O ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OG1 ? A THR 26 ? A THR 34 ? 1_555 86.9 ? 5 O ? D HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OG1 ? A THR 26 ? A THR 34 ? 1_555 87.8 ? 6 O1B ? C ADP . ? A ADP 301 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OG1 ? A THR 26 ? A THR 34 ? 1_555 176.9 ? 7 O ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 408 ? 1_555 171.8 ? 8 O ? D HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 408 ? 1_555 90.1 ? 9 O1B ? C ADP . ? A ADP 301 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 408 ? 1_555 91.9 ? 10 OG1 ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 408 ? 1_555 85.1 ? 11 O ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2A ? C ADP . ? A ADP 301 ? 1_555 89.9 ? 12 O ? D HOH . ? A HOH 402 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2A ? C ADP . ? A ADP 301 ? 1_555 175.2 ? 13 O1B ? C ADP . ? A ADP 301 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2A ? C ADP . ? A ADP 301 ? 1_555 92.2 ? 14 OG1 ? A THR 26 ? A THR 34 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2A ? C ADP . ? A ADP 301 ? 1_555 87.6 ? 15 O ? D HOH . ? A HOH 408 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2A ? C ADP . ? A ADP 301 ? 1_555 88.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-03-11 2 'Structure model' 1 1 2008-04-28 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 23.9860 _pdbx_refine_tls.origin_y 6.4160 _pdbx_refine_tls.origin_z 7.8820 _pdbx_refine_tls.T[1][1] 0.1375 _pdbx_refine_tls.T[2][2] 0.1355 _pdbx_refine_tls.T[3][3] 0.0809 _pdbx_refine_tls.T[1][2] 0.0356 _pdbx_refine_tls.T[1][3] -0.0212 _pdbx_refine_tls.T[2][3] -0.0139 _pdbx_refine_tls.L[1][1] 0.7481 _pdbx_refine_tls.L[2][2] 2.3148 _pdbx_refine_tls.L[3][3] 1.7423 _pdbx_refine_tls.L[1][2] -0.3628 _pdbx_refine_tls.L[1][3] 0.1217 _pdbx_refine_tls.L[2][3] -0.6373 _pdbx_refine_tls.S[1][1] 0.0557 _pdbx_refine_tls.S[1][2] 0.0404 _pdbx_refine_tls.S[1][3] 0.0264 _pdbx_refine_tls.S[2][1] -0.0512 _pdbx_refine_tls.S[2][2] -0.0192 _pdbx_refine_tls.S[2][3] 0.0046 _pdbx_refine_tls.S[3][1] 0.0593 _pdbx_refine_tls.S[3][2] 0.0646 _pdbx_refine_tls.S[3][3] -0.0365 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.beg_auth_seq_id 9 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 147 _pdbx_refine_tls_group.end_auth_seq_id 155 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 REFMAC refinement 5.1.27 ? 4 HKL-2000 'data reduction' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 148 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 148 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 148 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.99 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.69 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 80 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 67.08 _pdbx_validate_torsion.psi 175.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 9 ? CB ? A ARG 1 CB 2 1 Y 1 A ARG 9 ? CG ? A ARG 1 CG 3 1 Y 1 A ARG 9 ? CD ? A ARG 1 CD 4 1 Y 1 A ARG 9 ? NE ? A ARG 1 NE 5 1 Y 1 A ARG 9 ? CZ ? A ARG 1 CZ 6 1 Y 1 A ARG 9 ? NH1 ? A ARG 1 NH1 7 1 Y 1 A ARG 9 ? NH2 ? A ARG 1 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 301 MG MG A . C 3 ADP 1 301 201 ADP ADP A . D 4 HOH 1 401 401 HOH HOH A . D 4 HOH 2 402 402 HOH HOH A . D 4 HOH 3 403 403 HOH HOH A . D 4 HOH 4 404 404 HOH HOH A . D 4 HOH 5 405 405 HOH HOH A . D 4 HOH 6 406 406 HOH HOH A . D 4 HOH 7 407 407 HOH HOH A . D 4 HOH 8 408 408 HOH HOH A . D 4 HOH 9 409 409 HOH HOH A . D 4 HOH 10 410 410 HOH HOH A . D 4 HOH 11 411 411 HOH HOH A . D 4 HOH 12 412 412 HOH HOH A . D 4 HOH 13 413 413 HOH HOH A . D 4 HOH 14 414 414 HOH HOH A . D 4 HOH 15 415 415 HOH HOH A . D 4 HOH 16 416 416 HOH HOH A . D 4 HOH 17 417 417 HOH HOH A . D 4 HOH 18 418 418 HOH HOH A . D 4 HOH 19 419 419 HOH HOH A . D 4 HOH 20 420 420 HOH HOH A . D 4 HOH 21 421 421 HOH HOH A . D 4 HOH 22 422 422 HOH HOH A . D 4 HOH 23 423 423 HOH HOH A . D 4 HOH 24 424 424 HOH HOH A . D 4 HOH 25 425 425 HOH HOH A . D 4 HOH 26 426 426 HOH HOH A . D 4 HOH 27 427 427 HOH HOH A . D 4 HOH 28 428 428 HOH HOH A . D 4 HOH 29 429 429 HOH HOH A . D 4 HOH 30 430 430 HOH HOH A . D 4 HOH 31 431 431 HOH HOH A . D 4 HOH 32 432 432 HOH HOH A . D 4 HOH 33 433 433 HOH HOH A . D 4 HOH 34 434 434 HOH HOH A . D 4 HOH 35 435 435 HOH HOH A . D 4 HOH 36 436 436 HOH HOH A . D 4 HOH 37 437 437 HOH HOH A . D 4 HOH 38 438 438 HOH HOH A . D 4 HOH 39 439 439 HOH HOH A . D 4 HOH 40 440 440 HOH HOH A . D 4 HOH 41 441 441 HOH HOH A . D 4 HOH 42 442 442 HOH HOH A . D 4 HOH 43 443 443 HOH HOH A . D 4 HOH 44 444 444 HOH HOH A . D 4 HOH 45 445 445 HOH HOH A . D 4 HOH 46 446 446 HOH HOH A . D 4 HOH 47 447 447 HOH HOH A . D 4 HOH 48 448 448 HOH HOH A . D 4 HOH 49 449 449 HOH HOH A . D 4 HOH 50 450 450 HOH HOH A . D 4 HOH 51 451 451 HOH HOH A . D 4 HOH 52 452 452 HOH HOH A . D 4 HOH 53 453 453 HOH HOH A . D 4 HOH 54 454 454 HOH HOH A . D 4 HOH 55 455 455 HOH HOH A . D 4 HOH 56 456 456 HOH HOH A . D 4 HOH 57 457 457 HOH HOH A . D 4 HOH 58 458 458 HOH HOH A . D 4 HOH 59 459 459 HOH HOH A . D 4 HOH 60 460 460 HOH HOH A . D 4 HOH 61 461 461 HOH HOH A . D 4 HOH 62 462 462 HOH HOH A . D 4 HOH 63 463 463 HOH HOH A . D 4 HOH 64 464 464 HOH HOH A . D 4 HOH 65 465 465 HOH HOH A . D 4 HOH 66 466 466 HOH HOH A . D 4 HOH 67 467 467 HOH HOH A . D 4 HOH 68 468 468 HOH HOH A . D 4 HOH 69 469 469 HOH HOH A . D 4 HOH 70 470 470 HOH HOH A . D 4 HOH 71 471 471 HOH HOH A . D 4 HOH 72 472 472 HOH HOH A . D 4 HOH 73 473 473 HOH HOH A . D 4 HOH 74 474 474 HOH HOH A . D 4 HOH 75 475 475 HOH HOH A . D 4 HOH 76 476 476 HOH HOH A . D 4 HOH 77 477 477 HOH HOH A . D 4 HOH 78 478 478 HOH HOH A . D 4 HOH 79 479 479 HOH HOH A . D 4 HOH 80 480 480 HOH HOH A . D 4 HOH 81 481 481 HOH HOH A . D 4 HOH 82 482 482 HOH HOH A . D 4 HOH 83 483 483 HOH HOH A . D 4 HOH 84 484 484 HOH HOH A . D 4 HOH 85 485 485 HOH HOH A . D 4 HOH 86 486 486 HOH HOH A . D 4 HOH 87 487 487 HOH HOH A . D 4 HOH 88 488 488 HOH HOH A . D 4 HOH 89 489 489 HOH HOH A . D 4 HOH 90 490 490 HOH HOH A . D 4 HOH 91 491 491 HOH HOH A . D 4 HOH 92 492 492 HOH HOH A . D 4 HOH 93 493 493 HOH HOH A . D 4 HOH 94 494 494 HOH HOH A . D 4 HOH 95 495 495 HOH HOH A . D 4 HOH 96 496 496 HOH HOH A . D 4 HOH 97 497 497 HOH HOH A . D 4 HOH 98 498 498 HOH HOH A . D 4 HOH 99 499 499 HOH HOH A . D 4 HOH 100 500 500 HOH HOH A . D 4 HOH 101 501 501 HOH HOH A . D 4 HOH 102 502 502 HOH HOH A . D 4 HOH 103 503 503 HOH HOH A . D 4 HOH 104 504 504 HOH HOH A . D 4 HOH 105 505 505 HOH HOH A . D 4 HOH 106 506 506 HOH HOH A . D 4 HOH 107 507 507 HOH HOH A . D 4 HOH 108 508 508 HOH HOH A . D 4 HOH 109 509 509 HOH HOH A . D 4 HOH 110 510 510 HOH HOH A . D 4 HOH 111 511 511 HOH HOH A . D 4 HOH 112 512 512 HOH HOH A . D 4 HOH 113 513 513 HOH HOH A . D 4 HOH 114 514 514 HOH HOH A . D 4 HOH 115 515 515 HOH HOH A . D 4 HOH 116 516 516 HOH HOH A . D 4 HOH 117 517 517 HOH HOH A . D 4 HOH 118 518 518 HOH HOH A . D 4 HOH 119 519 519 HOH HOH A . D 4 HOH 120 520 520 HOH HOH A . D 4 HOH 121 521 521 HOH HOH A . D 4 HOH 122 522 522 HOH HOH A . D 4 HOH 123 523 523 HOH HOH A . D 4 HOH 124 524 524 HOH HOH A . D 4 HOH 125 525 525 HOH HOH A . D 4 HOH 126 526 526 HOH HOH A . D 4 HOH 127 527 527 HOH HOH A . D 4 HOH 128 528 528 HOH HOH A . D 4 HOH 129 529 529 HOH HOH A . D 4 HOH 130 530 530 HOH HOH A . #