HEADER TRANSFERASE/RNA 02-DEC-02 1NB7 TITLE HC-J4 RNA POLYMERASE COMPLEXED WITH SHORT RNA TEMPLATE STRAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*UP*UP*U)-3'; COMPND 3 CHAIN: E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLYPROTEIN; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: RNA DEPENDENT RNA POLYMERASE (RESIDUES 2420-2989); COMPND 9 EC: 2.7.7.48; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 5 ORGANISM_TAXID: 11103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS HEPATITIS C VIRUS, REPLICATION, RNA POLYMERASE, DE-NOVO PRIMING, KEYWDS 2 FUNCTION ANALYSIS, HCV, NS5B, RDRP, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.O'FARRELL,R.TROWBRIDGE,D.J.ROWLANDS,J.JAEGER REVDAT 4 14-FEB-24 1NB7 1 REMARK LINK REVDAT 3 24-FEB-09 1NB7 1 VERSN REVDAT 2 11-NOV-03 1NB7 1 KEYWDS AUTHOR REVDAT 1 25-MAR-03 1NB7 0 JRNL AUTH D.O'FARRELL,R.TROWBRIDGE,D.ROWLANDS,J.JAGER JRNL TITL SUBSTRATE COMPLEXES OF HEPATITIS C VIRUS RNA POLYMERASE JRNL TITL 2 (HC-J4): STRUCTURAL EVIDENCE FOR NUCLEOTIDE IMPORT AND JRNL TITL 3 DE-NOVO INITIATION. JRNL REF J.MOL.BIOL. V. 326 1025 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12589751 JRNL DOI 10.1016/S0022-2836(02)01439-0 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.990 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8769 REMARK 3 NUCLEIC ACID ATOMS : 154 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.594 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MES, GLYCEROL, DTT , PH 5.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 ARG B 566 REMARK 465 ALA B 567 REMARK 465 ARG B 568 REMARK 465 PRO B 569 REMARK 465 ARG B 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 544 CG CD OE1 NE2 REMARK 470 LEU A 545 CG CD1 CD2 REMARK 470 ASP A 546 CG OD1 OD2 REMARK 470 SER A 563 OG REMARK 470 LEU A 564 CG CD1 CD2 REMARK 470 SER A 565 OG REMARK 470 ARG A 566 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 544 CG CD OE1 NE2 REMARK 470 LEU B 545 CG CD1 CD2 REMARK 470 ASP B 546 CG OD1 OD2 REMARK 470 VAL B 552 CG1 CG2 REMARK 470 SER B 563 OG REMARK 470 LEU B 564 CG CD1 CD2 REMARK 470 SER B 565 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 236 NH2 ARG B 280 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 142 CB SER B 142 OG 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U F 3 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO A 265 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PRO B 94 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 14 13.40 -171.35 REMARK 500 SER A 19 22.77 -168.18 REMARK 500 ILE A 23 61.32 -51.21 REMARK 500 LEU A 31 116.95 -165.69 REMARK 500 HIS A 33 79.15 -65.42 REMARK 500 MET A 36 -7.36 -51.24 REMARK 500 ASP A 61 -163.77 -73.93 REMARK 500 ALA A 115 -70.16 -77.01 REMARK 500 ASN A 117 0.27 -64.64 REMARK 500 PRO A 149 4.77 -57.01 REMARK 500 LYS A 151 76.22 23.24 REMARK 500 THR A 181 -52.59 -121.01 REMARK 500 ALA A 185 -36.77 -38.82 REMARK 500 PHE A 193 -4.99 -51.53 REMARK 500 CYS A 223 71.56 41.80 REMARK 500 LEU A 260 -51.96 -122.58 REMARK 500 SER A 269 -0.04 -56.55 REMARK 500 ARG A 280 139.14 -33.31 REMARK 500 SER A 347 36.60 80.57 REMARK 500 CYS A 366 54.81 72.81 REMARK 500 SER A 367 53.09 25.64 REMARK 500 ALA A 376 -74.12 -47.17 REMARK 500 SER A 377 -0.33 -59.21 REMARK 500 THR A 385 -155.20 -114.87 REMARK 500 ARG A 386 168.47 169.43 REMARK 500 HIS A 402 104.86 -42.19 REMARK 500 ALA A 416 -33.81 -33.64 REMARK 500 GLU A 437 86.02 49.51 REMARK 500 LYS A 441 109.81 -49.39 REMARK 500 ALA A 450 158.76 -48.49 REMARK 500 THR A 473 17.57 -146.23 REMARK 500 HIS A 475 -57.82 -129.11 REMARK 500 PRO A 496 147.28 -37.27 REMARK 500 ARG A 505 -42.81 -18.55 REMARK 500 SER A 506 -78.20 -71.42 REMARK 500 VAL A 507 -33.47 -39.13 REMARK 500 PRO A 540 -72.92 -55.52 REMARK 500 ALA A 542 -75.26 -25.46 REMARK 500 GLN A 544 -106.00 -76.86 REMARK 500 LEU A 545 50.99 -62.36 REMARK 500 SER A 548 -142.41 -125.43 REMARK 500 ALA A 553 146.01 179.60 REMARK 500 TYR A 555 26.89 -150.94 REMARK 500 LEU A 564 -98.19 -109.94 REMARK 500 SER A 565 82.01 -27.70 REMARK 500 SER B 19 4.92 -160.33 REMARK 500 ILE B 23 95.77 -62.45 REMARK 500 ARG B 43 -16.76 -44.47 REMARK 500 ASP B 61 -166.59 -112.45 REMARK 500 SER B 76 7.55 -64.55 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U E 4 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NB4 RELATED DB: PDB REMARK 900 RELATED ID: 1NB6 RELATED DB: PDB DBREF 1NB7 A 1 570 UNP Q02828 Q02828_9HEPC 2420 2989 DBREF 1NB7 B 1 570 UNP Q02828 Q02828_9HEPC 2420 2989 DBREF 1NB7 E 1 4 PDB 1NB7 1NB7 1 4 DBREF 1NB7 F 1 4 PDB 1NB7 1NB7 1 4 SEQRES 1 E 4 U U U U SEQRES 1 F 4 U U U U SEQRES 1 A 570 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 570 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 A 570 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 570 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 A 570 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 570 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 570 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 A 570 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 570 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 A 570 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 A 570 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 A 570 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 570 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 570 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 570 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 570 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 570 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 570 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 A 570 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 570 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 A 570 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 570 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 570 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 570 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 570 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 570 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 A 570 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 570 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 570 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 570 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 570 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 570 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 570 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 570 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 570 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 570 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 570 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 570 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 570 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 570 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 570 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 A 570 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 A 570 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 A 570 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG SEQRES 1 B 570 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 B 570 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 B 570 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 B 570 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 B 570 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 B 570 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 B 570 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 B 570 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 B 570 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 B 570 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 B 570 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 B 570 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 B 570 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 B 570 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 B 570 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 B 570 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 B 570 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 B 570 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 B 570 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 B 570 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 B 570 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 B 570 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 B 570 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 B 570 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 B 570 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 B 570 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 B 570 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 B 570 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 B 570 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 B 570 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 B 570 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 B 570 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 B 570 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 B 570 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 B 570 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 B 570 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 B 570 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 B 570 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 B 570 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 B 570 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 B 570 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 B 570 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 B 570 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 B 570 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG HET MN A2001 1 HET MN A2002 1 HET MN B1001 1 HET MN B1002 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 4(MN 2+) HELIX 1 1 LEU A 26 LEU A 31 1 6 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LYS A 90 1 7 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 GLY A 188 1 25 HELIX 10 10 SER A 189 TYR A 195 5 7 HELIX 11 11 SER A 196 SER A 210 1 15 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 GLN A 241 1 13 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 LEU A 285 LYS A 307 1 23 HELIX 16 16 GLY A 328 TYR A 346 1 19 HELIX 17 17 PRO A 388 ARG A 401 1 14 HELIX 18 18 ASN A 406 ALA A 416 1 11 HELIX 19 19 THR A 418 ILE A 424 1 7 HELIX 20 20 ILE A 424 GLU A 437 1 14 HELIX 21 21 GLU A 455 LEU A 457 5 3 HELIX 22 22 ASP A 458 GLY A 468 1 11 HELIX 23 23 LEU A 469 THR A 473 5 5 HELIX 24 24 SER A 478 GLY A 493 1 16 HELIX 25 25 ARG A 498 SER A 513 1 16 HELIX 26 26 GLY A 516 LEU A 525 1 10 HELIX 27 27 PHE A 526 VAL A 530 5 5 HELIX 28 28 ILE A 539 GLN A 544 1 6 HELIX 29 29 ASN B 24 SER B 29 1 6 HELIX 30 30 HIS B 33 ASN B 35 5 3 HELIX 31 31 THR B 41 ARG B 43 5 3 HELIX 32 32 SER B 44 THR B 53 1 10 HELIX 33 33 ASP B 61 SER B 76 1 16 HELIX 34 34 SER B 84 THR B 92 1 9 HELIX 35 35 GLY B 104 ARG B 109 1 6 HELIX 36 36 SER B 112 ASP B 129 1 18 HELIX 37 37 ASP B 164 SER B 180 1 17 HELIX 38 38 THR B 181 GLY B 188 1 8 HELIX 39 39 SER B 189 TYR B 195 5 7 HELIX 40 40 SER B 196 LYS B 209 1 14 HELIX 41 41 CYS B 223 VAL B 228 1 6 HELIX 42 42 THR B 229 GLN B 241 1 13 HELIX 43 43 ALA B 246 LEU B 260 1 15 HELIX 44 44 LEU B 285 ALA B 306 1 22 HELIX 45 45 GLY B 328 TYR B 346 1 19 HELIX 46 46 PRO B 388 ARG B 401 1 14 HELIX 47 47 ASN B 406 TYR B 415 1 10 HELIX 48 48 THR B 418 MET B 423 1 6 HELIX 49 49 ILE B 424 GLN B 436 1 13 HELIX 50 50 GLU B 455 LEU B 457 5 3 HELIX 51 51 ASP B 458 GLY B 468 1 11 HELIX 52 52 LEU B 469 THR B 473 5 5 HELIX 53 53 SER B 478 GLY B 493 1 16 HELIX 54 54 PRO B 496 GLY B 515 1 20 HELIX 55 55 GLY B 515 PHE B 526 1 12 HELIX 56 56 ILE B 539 GLN B 544 1 6 SHEET 1 A 5 TYR A 4 TRP A 6 0 SHEET 2 A 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 A 5 GLY A 264 THR A 267 -1 N LEU A 266 O GLY A 275 SHEET 4 A 5 THR A 136 LYS A 141 1 N THR A 136 O THR A 267 SHEET 5 A 5 ARG A 158 PRO A 163 -1 O PHE A 162 N THR A 137 SHEET 1 B 2 VAL A 37 ALA A 39 0 SHEET 2 B 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 C 3 PRO A 214 TYR A 219 0 SHEET 2 C 3 ASP A 319 GLU A 325 -1 O CYS A 324 N MET A 215 SHEET 3 C 3 THR A 312 ASN A 316 -1 N THR A 312 O ILE A 323 SHEET 1 D 2 ASN A 369 HIS A 374 0 SHEET 2 D 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 E 3 LEU A 443 GLN A 446 0 SHEET 2 E 3 CYS A 451 ILE A 454 -1 O ILE A 454 N LEU A 443 SHEET 3 E 3 TYR A 561 HIS A 562 1 O HIS A 562 N CYS A 451 SHEET 1 F 5 TYR B 4 TRP B 6 0 SHEET 2 F 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 F 5 GLY B 264 THR B 267 -1 N GLY B 264 O ARG B 277 SHEET 4 F 5 THR B 136 LYS B 141 1 N THR B 136 O THR B 267 SHEET 5 F 5 ARG B 158 PRO B 163 -1 O PHE B 162 N THR B 137 SHEET 1 G 2 VAL B 37 ALA B 39 0 SHEET 2 G 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 H 3 PRO B 214 TYR B 219 0 SHEET 2 H 3 ASP B 319 GLU B 325 -1 O VAL B 322 N PHE B 217 SHEET 3 H 3 THR B 312 ASN B 316 -1 N THR B 312 O ILE B 323 SHEET 1 I 3 THR B 364 SER B 365 0 SHEET 2 I 3 SER B 368 HIS B 374 -1 O SER B 368 N SER B 365 SHEET 3 I 3 ARG B 380 THR B 385 -1 O THR B 385 N ASN B 369 SHEET 1 J 2 LEU B 443 ILE B 447 0 SHEET 2 J 2 ALA B 450 ILE B 454 -1 O TYR B 452 N CYS B 445 LINK O THR B 221 MN MN B1002 1555 1555 2.52 SITE 1 AC1 3 ASP B 220 ASP B 318 ASP B 319 SITE 1 AC2 3 THR B 221 PHE B 224 ASP B 318 SITE 1 AC3 3 THR A 221 CYS A 223 PHE A 224 CRYST1 106.660 108.500 134.950 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007410 0.00000