HEADER IMMUNE SYSTEM 04-DEC-02 1NC4 TITLE CRYSTAL STRUCTURE OF MONOCLONAL ANTIBODY 2D12.5 FAB COMPLEXED WITH GD- TITLE 2 DOTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: FAB; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: FAB; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MONOCLONAL ANTIBODY 2D12.5, IGG1 GAMMA HEAVY CHAIN; COMPND 11 CHAIN: D; COMPND 12 FRAGMENT: FAB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL_LINE: MYELOMA LINE PX63 AG8 FUSED WITH ANTIBODY EXPRESSING SOURCE 7 SPLEEN CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 STRAIN: BALB/C; SOURCE 13 CELL_LINE: MYELOMA LINE PX63 AG8 FUSED WITH ANTIBODY EXPRESSING SOURCE 14 SPLEEN CELLS; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 STRAIN: BALB/C; SOURCE 20 CELL_LINE: MYELOMA LINE PX63 AG8 FUSED WITH ANTIBODY EXPRESSING SOURCE 21 SPLEEN CELLS KEYWDS ANTIBODY-DOTA COMPLEX, RARE EARTH, DOTA, METAL CHELATE, GADOLINIUM, KEYWDS 2 GAMMA TURN, N-LINKED GLYCOSYLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.M.CORNEILLIE,A.J.FISHER,C.F.MEARES REVDAT 6 16-AUG-23 1NC4 1 HETSYN REVDAT 5 29-JUL-20 1NC4 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 25-DEC-19 1NC4 1 SEQRES LINK REVDAT 3 13-JUL-11 1NC4 1 VERSN REVDAT 2 24-FEB-09 1NC4 1 VERSN REVDAT 1 16-DEC-03 1NC4 0 JRNL AUTH T.M.CORNEILLIE,A.J.FISHER,C.F.MEARES JRNL TITL CRYSTAL STRUCTURES OF TWO COMPLEXES OF THE JRNL TITL 2 RARE-EARTH-DOTA-BINDING ANTIBODY 2D12.5: LIGAND GENERALITY JRNL TITL 3 FROM A CHIRAL SYSTEM. JRNL REF J.AM.CHEM.SOC. V. 125 15039 2003 JRNL REFN ISSN 0002-7863 JRNL PMID 14653738 JRNL DOI 10.1021/JA037236Y REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 39698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5997 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 311 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -5.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 11.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : XDOTA8_1_ONEARM.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : XDOTA8_1_ONEARM.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.160 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.95 REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GIG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, SODIUM CHLORIDE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.78450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.46700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.11950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.46700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.78450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.11950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 212 REMARK 465 GLU A 213 REMARK 465 CYS A 214 REMARK 465 SER A 215 REMARK 465 ASP B 220 REMARK 465 CYS B 221 REMARK 465 ALA D 135 REMARK 465 ALA D 136 REMARK 465 GLN D 137 REMARK 465 THR D 138 REMARK 465 ASN D 139 REMARK 465 CYS D 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 4 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 LEU B 183 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU D 4 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU D 183 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 34 57.22 37.47 REMARK 500 ASP A 43 35.93 84.35 REMARK 500 ALA A 86 -174.21 -175.32 REMARK 500 SER A 95 -39.21 59.08 REMARK 500 ASN A 96 20.05 -148.74 REMARK 500 THR A 159 -75.78 -97.59 REMARK 500 SER B 15 -1.71 79.10 REMARK 500 ASN B 139 82.41 65.10 REMARK 500 SER B 166 -36.00 -136.86 REMARK 500 SER B 178 74.47 44.91 REMARK 500 SER B 208 -4.92 -145.18 REMARK 500 TYR C 34 58.55 36.88 REMARK 500 ALA C 86 -171.61 -172.63 REMARK 500 SER C 95 -45.12 65.85 REMARK 500 ASN C 173 -10.43 76.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD3 B 502 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOF B 500 N2 REMARK 620 2 DOF B 500 O5 69.1 REMARK 620 3 DOF B 500 N1 65.3 134.0 REMARK 620 4 DOF B 500 O3 68.6 80.2 78.0 REMARK 620 5 DOF B 500 N3 65.6 63.1 102.0 128.8 REMARK 620 6 DOF B 500 N4 101.9 127.9 69.1 146.5 66.7 REMARK 620 7 DOF B 500 O7 138.7 88.1 131.6 142.7 73.5 65.0 REMARK 620 8 DOF B 500 O1 126.9 151.7 64.6 85.0 142.0 75.4 89.2 REMARK 620 9 HOH B 513 O 133.2 81.2 127.6 71.3 130.4 124.9 71.9 71.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD3 D 503 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOF D 501 O1 REMARK 620 2 DOF D 501 N1 64.7 REMARK 620 3 DOF D 501 O3 79.0 77.1 REMARK 620 4 DOF D 501 N3 146.2 104.1 131.7 REMARK 620 5 DOF D 501 O5 139.2 146.0 84.6 67.9 REMARK 620 6 DOF D 501 O7 100.6 127.1 153.5 59.1 78.7 REMARK 620 7 DOF D 501 N2 127.2 66.6 71.3 65.8 80.6 124.9 REMARK 620 8 DOF D 501 N4 77.0 69.0 144.4 69.3 130.3 58.1 103.6 REMARK 620 9 HOH D 505 O 61.7 120.6 69.5 134.8 77.6 86.8 136.4 119.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NC2 RELATED DB: PDB REMARK 900 MONOCLONAL ANTIBODY 2D12.5 FAB COMPLEXED WITH Y-DOTA REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS INFORMED THAT THE SEQUENCE OF THIS PROTEIN IS REMARK 999 NOT YET AVAILBLE IN ANY REFERENCE SEQUENCE DATABASE. REMARK 999 ACTUAL AMINO ACID SEQUENCE POSITIONS ARE USED FOR THE REMARK 999 ATOMIC COORDINATES. KABAT NUMBERING IS USED IN THE REMARK 999 CITED JOURNAL ARTICLE. AN ALIGNMENT OF KABAT POSITION REMARK 999 VS. ACTUAL AMINO ACID SEQUENCE POSITION IS AVAILABLE REMARK 999 IN THE SUPPORTING INFORMATION THAT ACCOMPANIES THE REMARK 999 ARTICLE. DBREF 1NC4 A 1 215 PDB 1NC4 1NC4 1 215 DBREF 1NC4 B 1 221 PDB 1NC4 1NC4 1 221 DBREF 1NC4 C 1 215 PDB 1NC4 1NC4 1 215 DBREF 1NC4 D 1 221 PDB 1NC4 1NC4 1 221 SEQRES 1 A 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 A 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 A 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 A 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 A 215 ASN ASN ASN ARG PRO PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 A 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE ALA SEQRES 7 A 215 GLY THR GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 A 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 A 215 ARG LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 A 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 A 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 A 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 A 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 A 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 A 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 A 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 A 215 LEU SER PRO ALA GLU CYS SER SEQRES 1 B 221 PCA VAL LYS LEU GLN GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 B 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 221 PHE SER LEU THR ASP TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 B 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 B 221 SER GLY GLY GLY THR ALA TYR THR ALA ALA PHE ILE SER SEQRES 6 B 221 ARG LEU ASN ILE TYR LYS ASP ASN SER LYS ASN GLN VAL SEQRES 7 B 221 PHE PHE GLU MET ASN SER LEU GLN ALA ASN ASP THR ALA SEQRES 8 B 221 MET TYR TYR CYS ALA ARG ARG GLY SER TYR PRO TYR ASN SEQRES 9 B 221 TYR PHE ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 B 221 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 B 221 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 B 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 B 221 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 B 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 B 221 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 B 221 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 B 221 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 C 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 C 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 C 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 C 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 C 215 ASN ASN ASN ARG PRO PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 C 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE ALA SEQRES 7 C 215 GLY THR GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 C 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 C 215 ARG LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 C 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 C 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 C 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 C 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 C 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 C 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 C 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 C 215 LEU SER PRO ALA GLU CYS SER SEQRES 1 D 221 GLN VAL LYS LEU GLN GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 D 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 D 221 PHE SER LEU THR ASP TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 D 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 D 221 SER GLY GLY GLY THR ALA TYR THR ALA ALA PHE ILE SER SEQRES 6 D 221 ARG LEU ASN ILE TYR LYS ASP ASN SER LYS ASN GLN VAL SEQRES 7 D 221 PHE PHE GLU MET ASN SER LEU GLN ALA ASN ASP THR ALA SEQRES 8 D 221 MET TYR TYR CYS ALA ARG ARG GLY SER TYR PRO TYR ASN SEQRES 9 D 221 TYR PHE ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 D 221 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 D 221 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 D 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 D 221 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 D 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 D 221 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 D 221 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 D 221 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS MODRES 1NC4 ASN D 88 ASN GLYCOSYLATION SITE MODRES 1NC4 PCA B 1 GLN PYROGLUTAMIC ACID HET PCA B 1 8 HET CL A 504 1 HET DOF B 500 38 HET GD3 B 502 1 HET CL C 505 1 HET NAG D 400 14 HET DOF D 501 38 HET GD3 D 503 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM CL CHLORIDE ION HETNAM DOF (S)-2-(4-NITROBENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N, HETNAM 2 DOF N',N'',N'''-TETRAACETATE HETNAM GD3 GADOLINIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 PCA C5 H7 N O3 FORMUL 5 CL 2(CL 1-) FORMUL 6 DOF 2(C23 H33 N5 O10) FORMUL 7 GD3 2(GD 3+) FORMUL 9 NAG C8 H15 N O6 FORMUL 12 HOH *332(H2 O) HELIX 1 1 THR A 30 TYR A 34 5 5 HELIX 2 2 GLN A 81 GLU A 85 5 5 HELIX 3 3 SER A 124 GLU A 129 1 6 HELIX 4 4 ALA A 185 HIS A 191 1 7 HELIX 5 5 ALA B 61 ILE B 64 5 4 HELIX 6 6 ASN B 73 LYS B 75 5 3 HELIX 7 7 GLN B 86 THR B 90 5 5 HELIX 8 8 SER B 162 SER B 164 5 3 HELIX 9 9 THR C 30 TYR C 34 5 5 HELIX 10 10 GLN C 81 GLU C 85 5 5 HELIX 11 11 SER C 124 GLU C 129 1 6 HELIX 12 12 ALA C 185 HIS C 191 1 7 HELIX 13 13 ALA D 61 ILE D 64 5 4 HELIX 14 14 ASN D 73 LYS D 75 5 3 HELIX 15 15 GLN D 86 THR D 90 5 5 HELIX 16 16 SER D 162 SER D 164 5 3 HELIX 17 17 PRO D 206 SER D 209 5 4 SHEET 1 A 4 VAL A 4 GLN A 6 0 SHEET 2 A 4 THR A 17 SER A 24 -1 O ARG A 23 N THR A 5 SHEET 3 A 4 LYS A 72 ALA A 78 -1 O LEU A 75 N LEU A 20 SHEET 4 A 4 PHE A 64 ILE A 69 -1 N SER A 67 O ALA A 74 SHEET 1 B 4 LEU A 45 ILE A 50 0 SHEET 2 B 4 ASN A 36 LYS A 41 -1 N LYS A 41 O LEU A 45 SHEET 3 B 4 ALA A 86 TRP A 93 -1 O PHE A 89 N VAL A 38 SHEET 4 B 4 TRP A 98 PHE A 100 -1 O VAL A 99 N LEU A 92 SHEET 1 C 5 LEU A 45 ILE A 50 0 SHEET 2 C 5 ASN A 36 LYS A 41 -1 N LYS A 41 O LEU A 45 SHEET 3 C 5 ALA A 86 TRP A 93 -1 O PHE A 89 N VAL A 38 SHEET 4 C 5 THR A 104 VAL A 108 -1 O LEU A 106 N ALA A 86 SHEET 5 C 5 ALA A 9 THR A 12 1 N LEU A 10 O ARG A 105 SHEET 1 D 4 SER A 117 PHE A 121 0 SHEET 2 D 4 LYS A 132 PHE A 142 -1 O VAL A 136 N PHE A 121 SHEET 3 D 4 TYR A 175 THR A 184 -1 O LEU A 183 N ALA A 133 SHEET 4 D 4 MET A 162 THR A 164 -1 N GLU A 163 O TYR A 180 SHEET 1 E 4 SER A 117 PHE A 121 0 SHEET 2 E 4 LYS A 132 PHE A 142 -1 O VAL A 136 N PHE A 121 SHEET 3 E 4 TYR A 175 THR A 184 -1 O LEU A 183 N ALA A 133 SHEET 4 E 4 SER A 168 LYS A 169 -1 N SER A 168 O MET A 176 SHEET 1 F 4 THR A 156 PRO A 157 0 SHEET 2 F 4 THR A 148 VAL A 153 -1 N VAL A 153 O THR A 156 SHEET 3 F 4 TYR A 194 HIS A 200 -1 O THR A 199 N THR A 148 SHEET 4 F 4 HIS A 203 LEU A 209 -1 O HIS A 203 N HIS A 200 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O THR B 23 N GLN B 5 SHEET 3 G 4 GLN B 77 MET B 82 -1 O VAL B 78 N CYS B 22 SHEET 4 G 4 LEU B 67 ASP B 72 -1 N TYR B 70 O PHE B 79 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 H 6 ALA B 91 ARG B 98 -1 N TYR B 93 O THR B 113 SHEET 4 H 6 GLY B 33 GLN B 39 -1 N VAL B 37 O TYR B 94 SHEET 5 H 6 LEU B 45 ILE B 51 -1 O GLY B 49 N TRP B 36 SHEET 6 H 6 THR B 57 TYR B 59 -1 O ALA B 58 N VAL B 50 SHEET 1 I 4 SER B 126 LEU B 130 0 SHEET 2 I 4 MET B 141 TYR B 151 -1 O GLY B 145 N LEU B 130 SHEET 3 I 4 TYR B 181 PRO B 190 -1 O VAL B 189 N VAL B 142 SHEET 4 I 4 VAL B 169 THR B 171 -1 N HIS B 170 O SER B 186 SHEET 1 J 4 SER B 126 LEU B 130 0 SHEET 2 J 4 MET B 141 TYR B 151 -1 O GLY B 145 N LEU B 130 SHEET 3 J 4 TYR B 181 PRO B 190 -1 O VAL B 189 N VAL B 142 SHEET 4 J 4 VAL B 175 LEU B 176 -1 N VAL B 175 O THR B 182 SHEET 1 K 3 THR B 157 TRP B 160 0 SHEET 2 K 3 THR B 200 HIS B 205 -1 O ASN B 202 N THR B 159 SHEET 3 K 3 THR B 210 LYS B 215 -1 O VAL B 212 N VAL B 203 SHEET 1 L 4 VAL C 4 GLN C 6 0 SHEET 2 L 4 VAL C 18 SER C 24 -1 O ARG C 23 N THR C 5 SHEET 3 L 4 LYS C 72 ILE C 77 -1 O ALA C 73 N CYS C 22 SHEET 4 L 4 PHE C 64 ILE C 69 -1 N SER C 65 O THR C 76 SHEET 1 M 4 LEU C 45 ILE C 50 0 SHEET 2 M 4 ASN C 36 LYS C 41 -1 N LYS C 41 O LEU C 45 SHEET 3 M 4 ALA C 86 TRP C 93 -1 O ILE C 87 N GLU C 40 SHEET 4 M 4 TRP C 98 PHE C 100 -1 O VAL C 99 N LEU C 92 SHEET 1 N 5 LEU C 45 ILE C 50 0 SHEET 2 N 5 ASN C 36 LYS C 41 -1 N LYS C 41 O LEU C 45 SHEET 3 N 5 ALA C 86 TRP C 93 -1 O ILE C 87 N GLU C 40 SHEET 4 N 5 THR C 104 VAL C 108 -1 O LEU C 106 N ALA C 86 SHEET 5 N 5 ALA C 9 THR C 12 1 N LEU C 10 O THR C 107 SHEET 1 O 4 SER C 117 PHE C 121 0 SHEET 2 O 4 LYS C 132 PHE C 142 -1 O VAL C 136 N PHE C 121 SHEET 3 O 4 TYR C 175 THR C 184 -1 O SER C 179 N CYS C 137 SHEET 4 O 4 MET C 162 THR C 164 -1 N GLU C 163 O TYR C 180 SHEET 1 P 4 SER C 117 PHE C 121 0 SHEET 2 P 4 LYS C 132 PHE C 142 -1 O VAL C 136 N PHE C 121 SHEET 3 P 4 TYR C 175 THR C 184 -1 O SER C 179 N CYS C 137 SHEET 4 P 4 SER C 168 LYS C 169 -1 N SER C 168 O MET C 176 SHEET 1 Q 4 THR C 156 PRO C 157 0 SHEET 2 Q 4 THR C 148 VAL C 153 -1 N VAL C 153 O THR C 156 SHEET 3 Q 4 TYR C 194 HIS C 200 -1 O GLN C 197 N ASP C 150 SHEET 4 Q 4 HIS C 203 LEU C 209 -1 O LEU C 209 N TYR C 194 SHEET 1 R 4 LYS D 3 GLU D 6 0 SHEET 2 R 4 LEU D 18 SER D 25 -1 O THR D 23 N GLN D 5 SHEET 3 R 4 GLN D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 R 4 LEU D 67 ASP D 72 -1 N TYR D 70 O PHE D 79 SHEET 1 S 6 LEU D 11 VAL D 12 0 SHEET 2 S 6 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 S 6 ALA D 91 GLY D 99 -1 N TYR D 93 O THR D 113 SHEET 4 S 6 TYR D 32 GLN D 39 -1 N VAL D 37 O TYR D 94 SHEET 5 S 6 LEU D 45 ILE D 51 -1 O GLY D 49 N TRP D 36 SHEET 6 S 6 THR D 57 TYR D 59 -1 O ALA D 58 N VAL D 50 SHEET 1 T 4 SER D 126 LEU D 130 0 SHEET 2 T 4 MET D 141 TYR D 151 -1 O LEU D 147 N TYR D 128 SHEET 3 T 4 LEU D 180 PRO D 190 -1 O TYR D 181 N TYR D 151 SHEET 4 T 4 VAL D 169 THR D 171 -1 N HIS D 170 O SER D 186 SHEET 1 U 4 SER D 126 LEU D 130 0 SHEET 2 U 4 MET D 141 TYR D 151 -1 O LEU D 147 N TYR D 128 SHEET 3 U 4 LEU D 180 PRO D 190 -1 O TYR D 181 N TYR D 151 SHEET 4 U 4 VAL D 175 GLN D 177 -1 N VAL D 175 O THR D 182 SHEET 1 V 3 THR D 157 TRP D 160 0 SHEET 2 V 3 THR D 200 HIS D 205 -1 O ASN D 202 N THR D 159 SHEET 3 V 3 THR D 210 LYS D 215 -1 O VAL D 212 N VAL D 203 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 137 CYS A 196 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.05 SSBOND 4 CYS B 146 CYS B 201 1555 1555 2.04 SSBOND 5 CYS C 22 CYS C 90 1555 1555 2.04 SSBOND 6 CYS C 137 CYS C 196 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 95 1555 1555 2.05 SSBOND 8 CYS D 146 CYS D 201 1555 1555 2.03 LINK C PCA B 1 N VAL B 2 1555 1555 1.33 LINK ND2 ASN D 88 C1 NAG D 400 1555 1555 1.52 LINK N2 DOF B 500 GD GD3 B 502 1555 1555 2.73 LINK O5 DOF B 500 GD GD3 B 502 1555 1555 2.77 LINK N1 DOF B 500 GD GD3 B 502 1555 1555 2.76 LINK O3 DOF B 500 GD GD3 B 502 1555 1555 2.40 LINK N3 DOF B 500 GD GD3 B 502 1555 1555 2.68 LINK N4 DOF B 500 GD GD3 B 502 1555 1555 2.67 LINK O7 DOF B 500 GD GD3 B 502 1555 1555 2.58 LINK O1 DOF B 500 GD GD3 B 502 1555 1555 2.44 LINK GD GD3 B 502 O HOH B 513 1555 1555 2.83 LINK O1 DOF D 501 GD GD3 D 503 1555 1555 2.46 LINK N1 DOF D 501 GD GD3 D 503 1555 1555 2.74 LINK O3 DOF D 501 GD GD3 D 503 1555 1555 2.25 LINK N3 DOF D 501 GD GD3 D 503 1555 1555 2.61 LINK O5 DOF D 501 GD GD3 D 503 1555 1555 2.56 LINK O7 DOF D 501 GD GD3 D 503 1555 1555 3.03 LINK N2 DOF D 501 GD GD3 D 503 1555 1555 2.72 LINK N4 DOF D 501 GD GD3 D 503 1555 1555 2.67 LINK GD GD3 D 503 O HOH D 505 1555 1555 2.88 CISPEP 1 TYR A 143 PRO A 144 0 -0.17 CISPEP 2 TYR B 101 PRO B 102 0 0.11 CISPEP 3 PHE B 152 PRO B 153 0 -0.61 CISPEP 4 GLU B 154 PRO B 155 0 0.00 CISPEP 5 TRP B 194 PRO B 195 0 -0.12 CISPEP 6 TYR C 143 PRO C 144 0 -0.14 CISPEP 7 TYR D 101 PRO D 102 0 0.06 CISPEP 8 PHE D 152 PRO D 153 0 -0.35 CISPEP 9 GLU D 154 PRO D 155 0 -0.26 CISPEP 10 TRP D 194 PRO D 195 0 0.55 CRYST1 67.569 82.239 160.934 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006214 0.00000