HEADER CELL ADHESION PROTEIN 23-MAR-95 1NCH TITLE STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CADHERIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS CADHERIN, CELL ADHESION PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SHAPIRO,A.M.FANNON,P.D.KWONG,A.THOMPSON,M.S.LEHMANN,G.GRUBEL,J.- AUTHOR 2 F.LEGRAND,J.ALS-NIELSEN,D.R.COLMAN,W.A.HENDRICKSON REVDAT 6 14-FEB-24 1NCH 1 REMARK REVDAT 5 20-NOV-19 1NCH 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1NCH 1 VERSN REVDAT 3 24-FEB-09 1NCH 1 VERSN REVDAT 2 01-APR-03 1NCH 1 JRNL REVDAT 1 10-JUL-95 1NCH 0 JRNL AUTH L.SHAPIRO,A.M.FANNON,P.D.KWONG,A.THOMPSON,M.S.LEHMANN, JRNL AUTH 2 G.GRUBEL,J.F.LEGRAND,J.ALS-NIELSEN,D.R.COLMAN, JRNL AUTH 3 W.A.HENDRICKSON JRNL TITL STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS. JRNL REF NATURE V. 374 327 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 7885471 JRNL DOI 10.1038/374327A0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 13950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.130 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15198 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 5 WAVELENGTH MAD EXPERIMENT TAKEN NEAR URANIUM L(III) REMARK 200 EDGE. REMARK 200 INITIAL PHASING WAS OBTAINED FROM TWO MULTI-WAVELENGTH REMARK 200 ANOMALOUS DIFFRACTION (MAD) EXPERIMENTS (ONE 4 WAVELENGTHS REMARK 200 AND ONE FIVE WAVELENGTHS) PERFORMED USING RADIATION REMARK 200 NEAR THE YTTERBIUM LIII ABSORPTION EDGE PRODUCED BY AN REMARK 200 UNDULATOR AT THE EUROPEAN SYNCHROTRON RADIATION FACILITY. REMARK 200 HIGH RESOLUTION REFINEMENT WAS COMPLETED STARTING FROM REMARK 200 A MODEL PRODUCED FROM ANOTHER MAD EXPERIMENT ON THE REMARK 200 TYPE C CRYSTAL OF THIS MOLECULE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT (MOLECULES A AND B) COMPRISE A REMARK 300 CADHERIN ADHESION DIMER. A STRAND DIMER IS FORMED, REMARK 300 FOR EXAMPLE, BETWEEN MOLECULE A AND ITS (Y, X, -Z) REMARK 300 SYMMETRY MATE. NOTE THAT THIS TRANSFORMATION IS IN REMARK 300 THE NON-ORTHOGONAL TRIGONAL LATTICE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.96000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 14 REMARK 465 LYS A 30 REMARK 465 ASN A 31 REMARK 465 ASP A 100 REMARK 465 MET A 101 REMARK 465 ASN A 102 REMARK 465 ASP A 103 REMARK 465 ASN A 104 REMARK 465 ARG A 105 REMARK 465 PRO A 106 REMARK 465 GLU A 107 REMARK 465 PHE A 108 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 101 REMARK 465 ASN B 102 REMARK 465 ASP B 103 REMARK 465 ASN B 104 REMARK 465 ARG B 105 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 PHE B 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 YB YB B 600 O HOH B 676 1.70 REMARK 500 OE2 GLU A 69 YB YB A 500 1.75 REMARK 500 OE2 GLU A 11 YB YB A 500 1.77 REMARK 500 OE2 GLU B 11 YB YB B 600 1.77 REMARK 500 OE2 GLU B 69 YB YB B 600 1.80 REMARK 500 OE1 GLU B 69 YB YB B 600 1.93 REMARK 500 CD GLU B 69 YB YB B 600 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 564 O HOH A 564 4555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE B 7 N ILE B 7 CA 0.528 REMARK 500 ILE B 7 CB ILE B 7 CG1 0.214 REMARK 500 ILE B 7 CA ILE B 7 C -0.756 REMARK 500 ILE B 7 C ILE B 7 O 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 9 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 GLU A 69 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ILE B 7 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 ILE B 7 N - CA - CB ANGL. DEV. = -17.9 DEGREES REMARK 500 ILE B 7 CG1 - CB - CG2 ANGL. DEV. = -32.4 DEGREES REMARK 500 ILE B 7 CA - CB - CG1 ANGL. DEV. = 32.2 DEGREES REMARK 500 GLU B 69 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 45.54 -176.53 REMARK 500 ASP A 1 11.81 140.49 REMARK 500 LEU A 21 -72.96 -99.68 REMARK 500 ALA A 43 -93.10 -119.35 REMARK 500 LEU B 21 -65.92 -103.42 REMARK 500 ALA B 43 -83.50 -109.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE MODEL INCLUDES TWO YTTERBIUM IONS (YB 3+) BOUND REMARK 600 AT A PUTATIVE CALCIUM BINDING SITE FOR EACH MOLECULE REMARK 600 OF THE ASYMMETRIC UNIT. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 500 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 69.2 REMARK 620 3 GLU A 69 OE1 70.5 54.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB B 600 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 100 OD1 88.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: YB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB B 600 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE NUMBERING IS FOR THE MATURE PROTEIN. DBREF 1NCH A 1 108 UNP P15116 CADH2_MOUSE 160 267 DBREF 1NCH B 1 108 UNP P15116 CADH2_MOUSE 160 267 SEQADV 1NCH GLY A 27 UNP P15116 ASP 186 CLONING ARTIFACT SEQADV 1NCH GLY B 27 UNP P15116 ASP 186 CLONING ARTIFACT SEQRES 1 A 110 GLY SER ASP TRP VAL ILE PRO PRO ILE ASN LEU PRO GLU SEQRES 2 A 110 ASN SER ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE SEQRES 3 A 110 ARG SER GLY ARG ASP LYS ASN LEU SER LEU ARG TYR SER SEQRES 4 A 110 VAL THR GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE SEQRES 5 A 110 PHE ILE ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR SEQRES 6 A 110 LYS PRO LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU SEQRES 7 A 110 ARG ALA HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU SEQRES 8 A 110 ASN PRO ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN SEQRES 9 A 110 ASP ASN ARG PRO GLU PHE SEQRES 1 B 110 GLY SER ASP TRP VAL ILE PRO PRO ILE ASN LEU PRO GLU SEQRES 2 B 110 ASN SER ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE SEQRES 3 B 110 ARG SER GLY ARG ASP LYS ASN LEU SER LEU ARG TYR SER SEQRES 4 B 110 VAL THR GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE SEQRES 5 B 110 PHE ILE ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR SEQRES 6 B 110 LYS PRO LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU SEQRES 7 B 110 ARG ALA HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU SEQRES 8 B 110 ASN PRO ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN SEQRES 9 B 110 ASP ASN ARG PRO GLU PHE HET YB A 500 1 HET YB B 600 1 HETNAM YB YTTERBIUM (III) ION FORMUL 3 YB 2(YB 3+) FORMUL 5 HOH *231(H2 O) HELIX 1 1 GLY B 27 LYS B 30 5 4 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 ILE A 92 ILE A 99 1 N ASN A 97 O ILE A 7 SHEET 3 A 4 ARG A 73 ASP A 82 -1 N ALA A 78 O ILE A 92 SHEET 4 A 4 LEU A 34 THR A 39 -1 N THR A 39 O ARG A 77 SHEET 1 B 3 PHE A 51 ILE A 53 0 SHEET 2 B 3 GLN A 59 VAL A 62 -1 N SER A 61 O ILE A 52 SHEET 3 B 3 GLN A 19 ARG A 23 -1 N VAL A 22 O LEU A 60 SHEET 1 C 4 ILE B 7 PRO B 10 0 SHEET 2 C 4 ILE B 92 ILE B 99 1 N ASN B 97 O ILE B 7 SHEET 3 C 4 ARG B 73 ASP B 82 -1 N ALA B 78 O ILE B 92 SHEET 4 C 4 LEU B 34 THR B 39 -1 N THR B 39 O ARG B 77 SHEET 1 D 3 PHE B 51 ILE B 53 0 SHEET 2 D 3 GLN B 59 VAL B 62 -1 N SER B 61 O ILE B 52 SHEET 3 D 3 GLN B 19 ARG B 23 -1 N VAL B 22 O LEU B 60 LINK OE1 GLU A 11 YB YB A 500 1555 1555 2.53 LINK OD1 ASP A 67 YB YB A 500 1555 1555 3.29 LINK OE1 GLU A 69 YB YB A 500 1555 1555 2.10 LINK OE1 GLU B 11 YB YB B 600 1555 1555 2.51 LINK OD1 ASP B 100 YB YB B 600 1555 1555 3.38 CISPEP 1 GLY A 15 PRO A 16 0 0.15 CISPEP 2 PHE A 17 PRO A 18 0 0.12 CISPEP 3 PRO A 46 PRO A 47 0 -0.08 CISPEP 4 GLY B 15 PRO B 16 0 0.04 CISPEP 5 PHE B 17 PRO B 18 0 -0.35 CISPEP 6 PRO B 46 PRO B 47 0 -0.31 SITE 1 YB 1 YB A 500 SITE 1 AC1 3 GLU A 11 ASP A 67 GLU A 69 SITE 1 AC2 4 GLU B 11 GLU B 69 ASP B 100 HOH B 676 CRYST1 79.730 79.730 74.960 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012542 0.007241 0.000000 0.00000 SCALE2 0.000000 0.014483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013340 0.00000