HEADER CELL ADHESION PROTEIN 02-FEB-99 1NCJ TITLE N-CADHERIN, TWO-DOMAIN FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (N-CADHERIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TWO-DOMAIN FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS CELL ADHESION PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAMURA,W.-S.SHAN,W.A.HENDRICKSON,D.R.COLMAN,L.SHAPIRO REVDAT 4 16-AUG-23 1NCJ 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1NCJ 1 VERSN REVDAT 2 01-APR-03 1NCJ 1 JRNL REVDAT 1 18-MAR-99 1NCJ 0 JRNL AUTH K.TAMURA,W.S.SHAN,W.A.HENDRICKSON,D.R.COLMAN,L.SHAPIRO JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF CELL ADHESION BY NEURAL (N-) JRNL TITL 2 CADHERIN. JRNL REF NEURON V. 20 1153 1998 JRNL REFN ISSN 0896-6273 JRNL PMID 9655503 JRNL DOI 10.1016/S0896-6273(00)80496-1 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 4581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9451 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.93000 REMARK 200 R SYM (I) : 0.93000 REMARK 200 FOR THE DATA SET : 12.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : 0.32200 REMARK 200 FOR SHELL : 3.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1NCG AND 1EDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: REMARK 280 CRYSTALLIZATION CONDITIONS: REMARK 280 REMARK 280 HANGING DROP, 20MG/ML PROTEIN REMARK 280 50 MM NA REMARK 280 ACETATE, PH 5.0, 15MM CACL2, REMARK 280 1MM UO2 ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 49.50000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.05000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 49.50000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.05000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 49.50000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.05000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 49.50000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.05000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.05000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 49.50000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.05000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 49.50000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.05000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 49.50000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 49.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 U IUM A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 2 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 2 CZ3 CH2 REMARK 470 VAL A 3 CG1 CG2 REMARK 470 ILE A 7 CG1 CG2 CD1 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 LEU A 32 CG CD1 CD2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 THR A 48 OG1 CG2 REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 HIS A 75 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ILE A 133 N REMARK 470 ASP A 137 CG OD1 OD2 REMARK 470 ASN A 139 CG OD1 ND2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 149 CD1 REMARK 470 ILE A 171 CD1 REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 THR A 200 OG1 CG2 REMARK 470 ILE A 211 CD1 REMARK 470 ASP A 215 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 480 SER A 33 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASP A 215 U IUM A 401 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 5 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO A 91 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 -149.89 152.78 REMARK 500 PRO A 5 92.86 -38.68 REMARK 500 PRO A 6 97.02 -14.19 REMARK 500 PRO A 10 158.02 -48.81 REMARK 500 ASN A 12 74.89 14.53 REMARK 500 LEU A 21 -70.44 -123.66 REMARK 500 ILE A 24 88.82 -63.16 REMARK 500 ASN A 31 -98.74 -143.27 REMARK 500 ALA A 43 -97.40 -105.84 REMARK 500 THR A 48 92.32 -55.94 REMARK 500 ILE A 50 -59.79 -155.52 REMARK 500 ILE A 56 -77.55 -72.40 REMARK 500 LEU A 70 -72.53 -82.97 REMARK 500 ASN A 104 136.08 -173.29 REMARK 500 HIS A 110 115.75 -160.69 REMARK 500 GLU A 119 -107.32 2.19 REMARK 500 ALA A 135 1.54 -69.15 REMARK 500 ASP A 136 -159.55 -52.68 REMARK 500 ASP A 137 79.15 -104.33 REMARK 500 PRO A 138 85.29 -36.69 REMARK 500 ASN A 139 -28.65 170.79 REMARK 500 ASN A 142 -29.78 -160.94 REMARK 500 ARG A 148 144.76 -173.43 REMARK 500 PRO A 154 -163.62 -76.94 REMARK 500 PRO A 159 -170.49 -67.97 REMARK 500 PHE A 162 -168.18 -114.16 REMARK 500 THR A 163 133.52 -178.41 REMARK 500 ASN A 166 -41.45 -27.65 REMARK 500 THR A 168 -75.46 -70.37 REMARK 500 ASP A 170 101.34 -54.46 REMARK 500 VAL A 183 114.58 -167.10 REMARK 500 GLU A 196 15.91 48.68 REMARK 500 ASN A 198 106.16 -44.51 REMARK 500 PRO A 199 64.65 -68.68 REMARK 500 THR A 200 -54.39 158.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 100 OD1 86.1 REMARK 620 3 MET A 101 O 102.8 91.3 REMARK 620 4 MET A 101 N 68.9 53.0 51.1 REMARK 620 5 ASP A 103 OD1 95.2 170.7 97.4 136.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASN A 12 OD1 93.0 REMARK 620 3 ASP A 67 OD1 96.5 94.8 REMARK 620 4 ASP A 103 OD2 97.2 100.5 158.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 103.5 REMARK 620 3 ASP A 134 OD2 124.4 109.0 REMARK 620 4 ASP A 134 OD1 157.0 98.1 53.1 REMARK 620 5 ASN A 142 O 64.7 163.2 72.1 95.6 REMARK 620 6 ASP A 194 OD2 78.5 102.2 133.4 89.4 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IUM A 401 U REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD2 REMARK 620 2 ASP A 215 OD1 76.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 401 DBREF 1NCJ A 1 215 UNP P15116 CADH2_MOUSE 160 374 SEQADV 1NCJ VAL A 150 UNP P15116 LEU 150 CONFLICT SEQRES 1 A 215 ASP TRP VAL ILE PRO PRO ILE ASN LEU PRO GLU ASN SER SEQRES 2 A 215 ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE ARG SER SEQRES 3 A 215 ASP ARG ASP LYS ASN LEU SER LEU ARG TYR SER VAL THR SEQRES 4 A 215 GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE PHE ILE SEQRES 5 A 215 ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR LYS PRO SEQRES 6 A 215 LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU ARG ALA SEQRES 7 A 215 HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU ASN PRO SEQRES 8 A 215 ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN ASP ASN SEQRES 9 A 215 ARG PRO GLU PHE LEU HIS GLN VAL TRP ASN GLY SER VAL SEQRES 10 A 215 PRO GLU GLY SER LYS PRO GLY THR TYR VAL MET THR VAL SEQRES 11 A 215 THR ALA ILE ASP ALA ASP ASP PRO ASN ALA LEU ASN GLY SEQRES 12 A 215 MET LEU ARG TYR ARG ILE VAL SER GLN ALA PRO SER THR SEQRES 13 A 215 PRO SER PRO ASN MET PHE THR ILE ASN ASN GLU THR GLY SEQRES 14 A 215 ASP ILE ILE THR VAL ALA ALA GLY LEU ASP ARG GLU LYS SEQRES 15 A 215 VAL GLN GLN TYR THR LEU ILE ILE GLN ALA THR ASP MET SEQRES 16 A 215 GLU GLY ASN PRO THR TYR GLY LEU SER ASN THR ALA THR SEQRES 17 A 215 ALA VAL ILE THR VAL THR ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET IUM A 401 1 HETNAM CA CALCIUM ION HETNAM IUM URANYL (VI) ION FORMUL 2 CA 3(CA 2+) FORMUL 5 IUM O2 U 2+ HELIX 1 1 ARG A 28 LYS A 30 5 3 HELIX 2 2 MET A 195 GLY A 197 5 3 SHEET 1 A 3 ARG A 35 THR A 39 0 SHEET 2 A 3 ARG A 73 VAL A 81 -1 N VAL A 81 O ARG A 35 SHEET 3 A 3 ILE A 92 ASN A 97 -1 N ILE A 96 O PHE A 74 SHEET 1 B 4 VAL A 112 PRO A 118 0 SHEET 2 B 4 SER A 204 THR A 214 1 N THR A 208 O TRP A 113 SHEET 3 B 4 GLN A 185 THR A 193 -1 N ALA A 192 O ASN A 205 SHEET 4 B 4 ARG A 146 ALA A 153 -1 N ALA A 153 O THR A 187 SHEET 1 C 2 PHE A 162 ILE A 164 0 SHEET 2 C 2 ILE A 171 THR A 173 -1 N ILE A 172 O THR A 163 LINK OE1 GLU A 11 CA CA A 302 1555 1555 2.24 LINK OE2 GLU A 11 CA CA A 303 1555 1555 1.75 LINK OD1 ASN A 12 CA CA A 303 1555 1555 3.04 LINK OD1 ASP A 67 CA CA A 303 1555 1555 1.65 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.06 LINK O MET A 101 CA CA A 302 1555 1555 1.67 LINK N MET A 101 CA CA A 302 1555 1555 3.31 LINK OD1 ASN A 102 CA CA A 301 1555 1555 2.59 LINK OD1 ASP A 103 CA CA A 302 1555 1555 1.75 LINK OD2 ASP A 103 CA CA A 303 1555 1555 1.74 LINK O ASN A 104 CA CA A 301 1555 1555 2.36 LINK OD2 ASP A 134 CA CA A 301 1555 1555 1.64 LINK OD1 ASP A 134 CA CA A 301 1555 1555 2.71 LINK O ASN A 142 CA CA A 301 1555 1555 2.45 LINK OD2 ASP A 194 CA CA A 301 1555 1555 1.79 LINK OD2 ASP A 215 U IUM A 401 1555 1555 1.65 LINK OD1 ASP A 215 U IUM A 401 1555 1555 1.72 CISPEP 1 GLY A 15 PRO A 16 0 0.00 CISPEP 2 PHE A 17 PRO A 18 0 0.53 CISPEP 3 PRO A 46 PRO A 47 0 -0.01 CISPEP 4 ALA A 153 PRO A 154 0 -0.07 CISPEP 5 THR A 156 PRO A 157 0 0.12 SITE 1 AC1 5 ASN A 102 ASN A 104 ASP A 134 ASN A 142 SITE 2 AC1 5 ASP A 194 SITE 1 AC2 4 GLU A 11 ASP A 100 MET A 101 ASP A 103 SITE 1 AC3 4 GLU A 11 ASN A 12 ASP A 67 ASP A 103 SITE 1 AC4 1 ASP A 215 CRYST1 99.000 99.000 136.100 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010101 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007347 0.00000