HEADER TRANSLATION 11-DEC-02 1NEE TITLE STRUCTURE OF ARCHAEAL TRANSLATION FACTOR AIF2BETA FROM TITLE 2 METHANOBACTERIUM THERMOAUTROPHICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF-2-BETA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: MTH1769; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B KEYWDS TWO DOMAIN PROTEIN, MIXED ALPHA-BETA STRUCTURE, ZINC FINGER, KEYWDS 2 TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.GUTIERREZ,J.F.TREMPE,N.SIDDIQUI,C.ARROWSMITH,K.GEHRING REVDAT 3 23-FEB-22 1NEE 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1NEE 1 VERSN REVDAT 1 09-MAR-04 1NEE 0 JRNL AUTH P.GUTIERREZ,M.J.OSBORNE,N.SIDDIQUI,J.F.TREMPE,C.ARROWSMITH, JRNL AUTH 2 K.GEHRING JRNL TITL STRUCTURE OF THE ARCHAEAL TRANSLATION INITIATION FACTOR JRNL TITL 2 AIF2BETA FROM METHANOBACTERIUM THERMOAUTOTROPHICUM: JRNL TITL 3 IMPLICATIONS FOR TRANSLATION INITIATION. JRNL REF PROTEIN SCI. V. 13 659 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 14978306 JRNL DOI 10.1110/PS.03506604 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, CNS 0.9 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NEE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017803. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : ~1.0MM AIF2BETA, 50MM TRIS REMARK 210 BUFFER, 300MM NACL, 50UM ZNCL2, REMARK 210 1MM DTT, PH 6.0, 90% H2O, 10% REMARK 210 D2O; ~1.0MM AIF2BETA, 50MM TRIS REMARK 210 BUFFER, 300MM NACL, 50UM ZNCL2, REMARK 210 1MM DTT, PH 6.0, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 HNCACB; CBCA(CO)NH; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.31, XEASY 1.3.13, ARIA REMARK 210 1.1 REMARK 210 METHOD USED : THE STRUCTURES ARE BASED ON 1142 REMARK 210 NOE-DERIVED CONSTRAINTS, 118 REMARK 210 DIHEDRAL ANGLE RESTRAINTS, 39 REMARK 210 HYDROGEN BONDS AND 58 NH REMARK 210 RESIDUAL DIPOLAR COUPLINGS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 -72.81 -74.07 REMARK 500 1 LYS A 6 55.91 -105.28 REMARK 500 1 ASP A 13 -95.66 -157.34 REMARK 500 1 PRO A 17 24.19 -65.55 REMARK 500 1 PRO A 28 168.60 -48.86 REMARK 500 1 LYS A 29 106.39 54.49 REMARK 500 1 ALA A 30 64.61 -157.77 REMARK 500 1 ASN A 37 29.62 -156.42 REMARK 500 1 ASN A 43 46.19 -109.03 REMARK 500 1 ASN A 52 105.04 -177.04 REMARK 500 1 ALA A 69 -62.67 -23.37 REMARK 500 1 ARG A 76 -97.90 -90.07 REMARK 500 1 ALA A 77 71.12 -161.94 REMARK 500 1 PHE A 83 49.63 -88.28 REMARK 500 1 PHE A 86 -76.43 -92.04 REMARK 500 1 ASN A 97 50.03 -111.05 REMARK 500 1 GLU A 104 75.09 44.53 REMARK 500 1 ASN A 106 -93.20 -72.69 REMARK 500 1 ARG A 107 60.24 -106.94 REMARK 500 1 ASP A 109 46.60 -81.70 REMARK 500 1 ARG A 117 69.98 64.28 REMARK 500 1 LEU A 121 172.08 178.10 REMARK 500 1 CYS A 123 47.82 -143.12 REMARK 500 1 ALA A 125 -72.97 -74.13 REMARK 500 1 CYS A 126 49.33 -80.27 REMARK 500 1 LEU A 132 -72.22 177.67 REMARK 500 2 ALA A 11 37.78 71.90 REMARK 500 2 ASP A 13 -37.69 72.61 REMARK 500 2 PRO A 17 -72.60 -58.84 REMARK 500 2 GLU A 18 -73.74 66.76 REMARK 500 2 LYS A 29 57.97 -174.99 REMARK 500 2 ALA A 30 -74.01 -136.87 REMARK 500 2 SER A 32 -176.43 -63.60 REMARK 500 2 GLN A 35 97.00 -171.82 REMARK 500 2 ASN A 37 26.69 -161.98 REMARK 500 2 ASN A 43 52.31 -110.53 REMARK 500 2 ASN A 52 96.66 -176.80 REMARK 500 2 ARG A 53 -39.62 -33.27 REMARK 500 2 ARG A 76 -154.89 -91.19 REMARK 500 2 ALA A 77 79.97 -113.87 REMARK 500 2 LYS A 82 30.73 -167.43 REMARK 500 2 PHE A 86 -81.98 -92.14 REMARK 500 2 ASN A 97 51.74 -110.50 REMARK 500 2 GLU A 104 75.88 48.31 REMARK 500 2 CYS A 105 53.22 -68.56 REMARK 500 2 ASN A 106 -88.86 -73.02 REMARK 500 2 ARG A 107 54.63 -107.22 REMARK 500 2 ASP A 109 43.94 -89.88 REMARK 500 2 ILE A 118 66.25 67.09 REMARK 500 2 SER A 119 -31.17 -142.03 REMARK 500 REMARK 500 THIS ENTRY HAS 545 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 136 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 CYS A 105 SG 109.7 REMARK 620 3 CYS A 123 SG 109.4 109.3 REMARK 620 4 CYS A 126 SG 109.7 109.4 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 136 DBREF 1NEE A 1 135 UNP O27797 IF2B_METTH 1 135 SEQADV 1NEE GLY A -2 UNP O27797 EXPRESSION TAG SEQADV 1NEE SER A -1 UNP O27797 EXPRESSION TAG SEQADV 1NEE HIS A 0 UNP O27797 EXPRESSION TAG SEQRES 1 A 138 GLY SER HIS MET ASP ASP TYR GLU LYS LEU LEU GLU ARG SEQRES 2 A 138 ALA ILE ASP GLN LEU PRO PRO GLU VAL PHE GLU THR LYS SEQRES 3 A 138 ARG PHE GLU VAL PRO LYS ALA TYR SER VAL ILE GLN GLY SEQRES 4 A 138 ASN ARG THR PHE ILE GLN ASN PHE ARG GLU VAL ALA ASP SEQRES 5 A 138 ALA LEU ASN ARG ASP PRO GLN HIS LEU LEU LYS PHE LEU SEQRES 6 A 138 LEU ARG GLU LEU GLY THR ALA GLY ASN LEU GLU GLY GLY SEQRES 7 A 138 ARG ALA ILE LEU GLN GLY LYS PHE THR HIS PHE LEU ILE SEQRES 8 A 138 ASN GLU ARG ILE GLU ASP TYR VAL ASN LYS PHE VAL ILE SEQRES 9 A 138 CYS HIS GLU CYS ASN ARG PRO ASP THR ARG ILE ILE ARG SEQRES 10 A 138 GLU GLY ARG ILE SER LEU LEU LYS CYS GLU ALA CYS GLY SEQRES 11 A 138 ALA LYS ALA PRO LEU LYS ASN VAL HET ZN A 136 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASN A 43 ASN A 52 1 10 HELIX 2 2 ASP A 54 LEU A 66 1 13 HELIX 3 3 PHE A 86 ASN A 97 1 12 HELIX 4 4 ASN A 97 HIS A 103 1 7 SHEET 1 A 3 ILE A 34 GLN A 35 0 SHEET 2 A 3 ARG A 38 ILE A 41 -1 O ARG A 38 N GLN A 35 SHEET 3 A 3 ALA A 77 GLN A 80 -1 O ALA A 77 N ILE A 41 SHEET 1 B 2 ILE A 113 GLU A 115 0 SHEET 2 B 2 LEU A 120 LYS A 122 -1 O LEU A 120 N GLU A 115 LINK SG CYS A 102 ZN ZN A 136 1555 1555 2.33 LINK SG CYS A 105 ZN ZN A 136 1555 1555 2.32 LINK SG CYS A 123 ZN ZN A 136 1555 1555 2.31 LINK SG CYS A 126 ZN ZN A 136 1555 1555 2.32 SITE 1 AC1 4 CYS A 102 CYS A 105 CYS A 123 CYS A 126 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1