data_1NEM # _entry.id 1NEM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NEM pdb_00001nem 10.2210/pdb1nem/pdb RCSB RCSB000653 ? ? WWPDB D_1000000653 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-31 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-12-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly 13 4 'Structure model' pdbx_struct_oper_list 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen 18 5 'Structure model' chem_comp 19 5 'Structure model' chem_comp_atom 20 5 'Structure model' chem_comp_bond 21 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_atom_id' 3 4 'Structure model' '_atom_site.auth_seq_id' 4 4 'Structure model' '_atom_site.label_asym_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_atom_site.label_entity_id' 7 4 'Structure model' '_chem_comp.name' 8 4 'Structure model' '_chem_comp.type' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 5 'Structure model' '_chem_comp.pdbx_synonyms' 24 5 'Structure model' '_database_2.pdbx_DOI' 25 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NEM _pdbx_database_status.recvd_initial_deposition_date 1999-03-15 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, L.' 1 'Majumdar, A.' 2 'Hu, W.' 3 'Jaishree, T.J.' 4 'Xu, W.' 5 'Patel, D.J.' 6 # _citation.id primary _citation.title 'Saccharide-RNA recognition in a complex formed between neomycin B and an RNA aptamer' _citation.journal_abbrev 'Structure Fold.Des.' _citation.journal_volume 7 _citation.page_first 817 _citation.page_last 827 _citation.year 1999 _citation.journal_id_ASTM FODEFH _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 1263 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10425683 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(99)80105-1' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, L.' 1 ? primary 'Majumdar, A.' 2 ? primary 'Hu, W.' 3 ? primary 'Jaishree, T.J.' 4 ? primary 'Xu, W.' 5 ? primary 'Patel, D.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*AP*CP*UP*GP*GP*GP*CP*GP*AP*GP*AP*AP*GP*UP*UP*UP*AP*GP*UP*CP*C)-3'" 7459.481 1 ? ? ? 'Complexed with neomycin B; hetero groups BDG (ring A), NEB (ring B), RIB (ring C), and NED (ring D)' 2 branched man '2,6-diamino-2,6-dideoxy-beta-L-idopyranose-(1-3)-beta-D-ribofuranose' 310.301 1 ? ? ? ? 3 non-polymer man 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose 178.186 1 ? ? ? ? 4 non-polymer syn 2-DEOXY-D-STREPTAMINE 163.195 1 ? ? ? 'RING A OF NEOMYCIN B' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACUGGGCGAGAAGUUUAGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACUGGGCGAGAAGUUUAGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose BDG 4 2-DEOXY-D-STREPTAMINE NEB # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 U n 1 6 G n 1 7 G n 1 8 G n 1 9 C n 1 10 G n 1 11 A n 1 12 G n 1 13 A n 1 14 A n 1 15 G n 1 16 U n 1 17 U n 1 18 U n 1 19 A n 1 20 G n 1 21 U n 1 22 C n 1 23 C n # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a222h-1b_1-4][a2121h-1b_1-5_2*N_6*N]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][D-1-deoxy-Ribf]{[(3+1)][b-L-IdopN6N]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 IDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BDR _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BDG 'D-saccharide, alpha linking' . 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose ;O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 2,6-diamino-2,6-dideoxy-alpha-D-glucose; 2,6-diamino-2,6-dideoxy-D-glucose; 2,6-diamino-2,6-dideoxy-glucose ; 'C6 H14 N2 O4' 178.186 BDR 'D-saccharide, beta linking' . beta-D-ribofuranose 'beta-D-ribose; D-ribose; ribose; BETA-D-RIBOFURANOSYL' 'C5 H10 O5' 150.130 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 IDG 'L-saccharide, beta linking' . 2,6-diamino-2,6-dideoxy-beta-L-idopyranose ;O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSE; 2,6-diamino-2,6-dideoxy-beta-L-idose; 2,6-diamino-2,6-dideoxy-L-idose; 2,6-diamino-2,6-dideoxy-idose ; 'C6 H14 N2 O4' 178.186 NEB non-polymer . 2-DEOXY-D-STREPTAMINE ? 'C6 H15 N2 O3 1' 163.195 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpN[6N]a' BDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpN6N BDR 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DRibfb BDR 'COMMON NAME' GMML 1.0 b-D-ribofuranose BDR 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Ribf BDR 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rib IDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-IdopN6N # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 4 4 G G A . n A 1 2 G 2 5 5 G G A . n A 1 3 A 3 6 6 A A A . n A 1 4 C 4 7 7 C C A . n A 1 5 U 5 8 8 U U A . n A 1 6 G 6 9 9 G G A . n A 1 7 G 7 10 10 G G A . n A 1 8 G 8 11 11 G G A . n A 1 9 C 9 12 12 C C A . n A 1 10 G 10 13 13 G G A . n A 1 11 A 11 14 14 A A A . n A 1 12 G 12 15 15 G G A . n A 1 13 A 13 16 16 A A A . n A 1 14 A 14 17 17 A A A . n A 1 15 G 15 18 18 G G A . n A 1 16 U 16 19 19 U U A . n A 1 17 U 17 20 20 U U A . n A 1 18 U 18 21 21 U U A . n A 1 19 A 19 22 22 A A A . n A 1 20 G 20 23 23 G G A . n A 1 21 U 21 24 24 U U A . n A 1 22 C 22 25 25 C C A . n A 1 23 C 23 26 26 C C A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BDR 1 B BDR 1 ? RIB 29 n B 2 IDG 2 B IDG 2 ? NED 30 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BDG 1 27 27 BDG BDG A . D 4 NEB 1 28 28 NEB NEB A . # _cell.entry_id 1NEM _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NEM _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1NEM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1NEM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NEM _struct.title 'Saccharide-RNA recognition in the neomycin B / RNA aptamer complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NEM _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA APTAMER, AMINOGLYCOSIDE, ANTIBIOTIC, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1NEM _struct_ref.pdbx_db_accession 1NEM _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NEM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1NEM _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C BDG . C1 ? ? ? 1_555 D NEB . O4 ? ? A BDG 27 A NEB 28 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale2 covale one ? D NEB . O5 ? ? ? 1_555 B BDR . C1 ? ? A NEB 28 B BDR 1 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale3 covale both ? B BDR . O3 ? ? ? 1_555 B IDG . C1 ? ? B BDR 1 B IDG 2 1_555 ? ? ? ? ? ? ? 1.399 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 5 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 5 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 5 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 5 A C 26 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog8 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 6 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 6 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 7 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 7 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 7 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 8 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 8 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 18 O2 ? ? A G 9 A U 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 18 N3 ? ? A G 9 A U 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A U 17 O2 ? ? A G 10 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A U 17 N3 ? ? A G 10 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A U 16 O2 ? ? A G 11 A U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A U 16 N3 ? ? A G 11 A U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A A 14 N7 ? ? A G 13 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N3 ? ? ? 1_555 A A 14 N6 ? ? A G 13 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N9 A A 6 ? ? C4 A A 6 ? ? 1.418 1.374 0.044 0.006 N 2 1 N9 A A 14 ? ? C4 A A 14 ? ? 1.416 1.374 0.042 0.006 N 3 1 N9 A A 17 ? ? C4 A A 17 ? ? 1.415 1.374 0.041 0.006 N 4 1 N1 A U 19 ? ? C2 A U 19 ? ? 1.436 1.381 0.055 0.009 N 5 1 N1 A U 20 ? ? C2 A U 20 ? ? 1.436 1.381 0.055 0.009 N 6 1 N1 A U 24 ? ? C2 A U 24 ? ? 1.442 1.381 0.061 0.009 N 7 2 N9 A A 6 ? ? C4 A A 6 ? ? 1.422 1.374 0.048 0.006 N 8 2 N9 A A 14 ? ? C4 A A 14 ? ? 1.414 1.374 0.040 0.006 N 9 2 N9 A A 17 ? ? C4 A A 17 ? ? 1.417 1.374 0.043 0.006 N 10 2 N1 A U 19 ? ? C2 A U 19 ? ? 1.437 1.381 0.056 0.009 N 11 2 N1 A U 20 ? ? C2 A U 20 ? ? 1.436 1.381 0.055 0.009 N 12 2 N1 A U 24 ? ? C2 A U 24 ? ? 1.444 1.381 0.063 0.009 N 13 3 N9 A A 6 ? ? C4 A A 6 ? ? 1.414 1.374 0.040 0.006 N 14 3 N1 A U 8 ? ? C2 A U 8 ? ? 1.436 1.381 0.055 0.009 N 15 3 N9 A A 14 ? ? C4 A A 14 ? ? 1.411 1.374 0.037 0.006 N 16 3 N9 A A 17 ? ? C4 A A 17 ? ? 1.412 1.374 0.038 0.006 N 17 3 N1 A U 24 ? ? C2 A U 24 ? ? 1.439 1.381 0.058 0.009 N 18 4 N1 A C 12 ? ? C2 A C 12 ? ? 1.461 1.397 0.064 0.010 N 19 4 N9 A A 14 ? ? C4 A A 14 ? ? 1.412 1.374 0.038 0.006 N 20 4 N9 A A 17 ? ? C4 A A 17 ? ? 1.414 1.374 0.040 0.006 N 21 4 N1 A U 19 ? ? C2 A U 19 ? ? 1.438 1.381 0.057 0.009 N 22 4 N1 A U 20 ? ? C2 A U 20 ? ? 1.436 1.381 0.055 0.009 N 23 4 N1 A U 21 ? ? C2 A U 21 ? ? 1.440 1.381 0.059 0.009 N 24 4 N1 A U 24 ? ? C2 A U 24 ? ? 1.441 1.381 0.060 0.009 N 25 5 N9 A A 6 ? ? C4 A A 6 ? ? 1.420 1.374 0.046 0.006 N 26 5 N1 A C 12 ? ? C2 A C 12 ? ? 1.459 1.397 0.062 0.010 N 27 5 N9 A A 14 ? ? C4 A A 14 ? ? 1.414 1.374 0.040 0.006 N 28 5 N9 A A 16 ? ? C4 A A 16 ? ? 1.412 1.374 0.038 0.006 N 29 5 N9 A A 17 ? ? C4 A A 17 ? ? 1.412 1.374 0.038 0.006 N 30 5 N1 A U 19 ? ? C2 A U 19 ? ? 1.437 1.381 0.056 0.009 N 31 5 N1 A U 24 ? ? C2 A U 24 ? ? 1.445 1.381 0.064 0.009 N 32 6 N1 A C 12 ? ? C2 A C 12 ? ? 1.459 1.397 0.062 0.010 N 33 6 N9 A A 14 ? ? C4 A A 14 ? ? 1.412 1.374 0.038 0.006 N 34 6 N9 A A 17 ? ? C4 A A 17 ? ? 1.420 1.374 0.046 0.006 N 35 6 N1 A U 19 ? ? C2 A U 19 ? ? 1.439 1.381 0.058 0.009 N 36 6 N1 A U 20 ? ? C2 A U 20 ? ? 1.443 1.381 0.062 0.009 N 37 6 N1 A U 21 ? ? C2 A U 21 ? ? 1.436 1.381 0.055 0.009 N 38 6 N1 A U 24 ? ? C2 A U 24 ? ? 1.442 1.381 0.061 0.009 N 39 7 N9 A A 6 ? ? C4 A A 6 ? ? 1.418 1.374 0.044 0.006 N 40 7 N9 A A 14 ? ? C4 A A 14 ? ? 1.412 1.374 0.038 0.006 N 41 7 N9 A A 17 ? ? C4 A A 17 ? ? 1.416 1.374 0.042 0.006 N 42 7 N1 A U 20 ? ? C2 A U 20 ? ? 1.438 1.381 0.057 0.009 N 43 7 N1 A U 21 ? ? C2 A U 21 ? ? 1.436 1.381 0.055 0.009 N 44 7 N1 A U 24 ? ? C2 A U 24 ? ? 1.438 1.381 0.057 0.009 N 45 8 N9 A A 6 ? ? C4 A A 6 ? ? 1.418 1.374 0.044 0.006 N 46 8 N1 A U 8 ? ? C2 A U 8 ? ? 1.435 1.381 0.054 0.009 N 47 8 N9 A A 14 ? ? C4 A A 14 ? ? 1.414 1.374 0.040 0.006 N 48 8 N9 A A 17 ? ? C4 A A 17 ? ? 1.416 1.374 0.042 0.006 N 49 8 N1 A U 19 ? ? C2 A U 19 ? ? 1.442 1.381 0.061 0.009 N 50 8 N1 A U 20 ? ? C2 A U 20 ? ? 1.437 1.381 0.056 0.009 N 51 8 N1 A U 24 ? ? C2 A U 24 ? ? 1.442 1.381 0.061 0.009 N 52 9 N9 A A 6 ? ? C4 A A 6 ? ? 1.417 1.374 0.043 0.006 N 53 9 N9 A A 14 ? ? C4 A A 14 ? ? 1.413 1.374 0.039 0.006 N 54 9 N9 A A 17 ? ? C4 A A 17 ? ? 1.414 1.374 0.040 0.006 N 55 9 N1 A U 19 ? ? C2 A U 19 ? ? 1.440 1.381 0.059 0.009 N 56 9 N1 A U 24 ? ? C2 A U 24 ? ? 1.443 1.381 0.062 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.03 119.90 6.13 0.70 N 2 1 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 126.09 119.90 6.19 0.70 N 3 1 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 125.07 118.60 6.47 0.60 N 4 1 C6 A C 7 ? ? N1 A C 7 ? ? C2 A C 7 ? ? 117.80 120.30 -2.50 0.40 N 5 1 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.55 118.90 3.65 0.60 N 6 1 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 125.18 119.90 5.28 0.70 N 7 1 C2 A G 10 ? ? N3 A G 10 ? ? C4 A G 10 ? ? 114.91 111.90 3.01 0.50 N 8 1 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 125.92 119.90 6.02 0.70 N 9 1 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.46 119.90 6.56 0.70 N 10 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.60 108.50 5.10 0.70 N 11 1 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 122.91 118.90 4.01 0.60 N 12 1 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.59 119.90 5.69 0.70 N 13 1 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.76 118.60 5.16 0.60 N 14 1 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.69 119.90 5.79 0.70 N 15 1 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 122.21 118.60 3.61 0.60 N 16 1 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.06 118.60 4.46 0.60 N 17 1 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 125.71 119.90 5.81 0.70 N 18 1 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 123.77 119.90 3.87 0.60 N 19 1 "C3'" A U 21 ? ? "O3'" A U 21 ? ? P A A 22 ? ? 132.60 119.70 12.90 1.20 Y 20 1 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 123.61 118.60 5.01 0.60 N 21 1 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 125.66 119.90 5.76 0.70 N 22 1 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.67 118.90 3.77 0.60 N 23 1 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.55 118.90 3.65 0.60 N 24 2 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 125.49 119.90 5.59 0.70 N 25 2 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 126.01 119.90 6.11 0.70 N 26 2 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 124.85 118.60 6.25 0.60 N 27 2 C6 A C 7 ? ? N1 A C 7 ? ? C2 A C 7 ? ? 117.74 120.30 -2.56 0.40 N 28 2 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.61 118.90 3.71 0.60 N 29 2 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.40 119.90 6.50 0.70 N 30 2 C5 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 124.66 128.60 -3.94 0.60 N 31 2 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.57 119.90 6.67 0.70 N 32 2 C5 A G 10 ? ? C6 A G 10 ? ? O6 A G 10 ? ? 124.90 128.60 -3.70 0.60 N 33 2 P A G 11 ? ? "O5'" A G 11 ? ? "C5'" A G 11 ? ? 130.86 120.90 9.96 1.60 N 34 2 "O4'" A G 11 ? ? "C1'" A G 11 ? ? N9 A G 11 ? ? 112.90 108.50 4.40 0.70 N 35 2 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.12 119.90 6.22 0.70 N 36 2 "C3'" A G 11 ? ? "O3'" A G 11 ? ? P A C 12 ? ? 136.50 119.70 16.80 1.20 Y 37 2 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.93 108.50 4.43 0.70 N 38 2 C6 A C 12 ? ? N1 A C 12 ? ? C2 A C 12 ? ? 117.84 120.30 -2.46 0.40 N 39 2 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 122.75 118.90 3.85 0.60 N 40 2 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 126.83 119.90 6.93 0.70 N 41 2 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.81 118.60 5.21 0.60 N 42 2 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.51 119.90 5.61 0.70 N 43 2 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 122.61 118.60 4.01 0.60 N 44 2 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.10 118.60 4.50 0.60 N 45 2 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 125.03 119.90 5.13 0.70 N 46 2 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.18 119.90 4.28 0.60 N 47 2 C5 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.39 128.60 -4.21 0.60 N 48 2 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 124.12 118.60 5.52 0.60 N 49 2 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 126.93 119.90 7.03 0.70 N 50 2 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.54 118.90 3.64 0.60 N 51 2 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.54 118.90 3.64 0.60 N 52 3 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.07 119.90 6.17 0.70 N 53 3 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 125.32 119.90 5.42 0.70 N 54 3 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 123.99 118.60 5.39 0.60 N 55 3 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.59 118.90 3.69 0.60 N 56 3 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.26 119.90 6.36 0.70 N 57 3 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.26 119.90 6.36 0.70 N 58 3 C5 A G 10 ? ? C6 A G 10 ? ? O6 A G 10 ? ? 124.72 128.60 -3.88 0.60 N 59 3 C2 A G 11 ? ? N3 A G 11 ? ? C4 A G 11 ? ? 115.36 111.90 3.46 0.50 N 60 3 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 125.60 119.90 5.70 0.70 N 61 3 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 122.96 118.90 4.06 0.60 N 62 3 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 126.10 119.90 6.20 0.70 N 63 3 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.10 118.60 4.50 0.60 N 64 3 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 126.25 119.90 6.35 0.70 N 65 3 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 123.36 118.60 4.76 0.60 N 66 3 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.33 118.60 4.73 0.60 N 67 3 C8 A G 18 ? ? N9 A G 18 ? ? C4 A G 18 ? ? 103.90 106.40 -2.50 0.40 N 68 3 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.40 119.90 6.50 0.70 N 69 3 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 123.68 119.90 3.78 0.60 N 70 3 C5 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.80 128.60 -3.80 0.60 N 71 3 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 122.83 118.60 4.23 0.60 N 72 3 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 125.99 119.90 6.09 0.70 N 73 3 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.78 118.90 3.88 0.60 N 74 3 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.57 118.90 3.67 0.60 N 75 4 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 125.64 119.90 5.74 0.70 N 76 4 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.40 108.50 4.90 0.70 N 77 4 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 125.00 119.90 5.10 0.70 N 78 4 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 123.06 118.60 4.46 0.60 N 79 4 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.09 119.90 6.19 0.70 N 80 4 "C3'" A G 9 ? ? "O3'" A G 9 ? ? P A G 10 ? ? 132.83 119.70 13.13 1.20 Y 81 4 C2 A G 10 ? ? N3 A G 10 ? ? C4 A G 10 ? ? 115.09 111.90 3.19 0.50 N 82 4 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.58 119.90 6.68 0.70 N 83 4 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 125.81 119.90 5.91 0.70 N 84 4 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 123.65 118.90 4.75 0.60 N 85 4 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.11 119.90 5.21 0.70 N 86 4 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.86 118.60 5.26 0.60 N 87 4 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 126.15 119.90 6.25 0.70 N 88 4 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 123.81 118.60 5.21 0.60 N 89 4 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 122.98 118.60 4.38 0.60 N 90 4 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.94 119.90 7.04 0.70 N 91 4 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 122.78 118.60 4.18 0.60 N 92 4 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 126.92 119.90 7.02 0.70 N 93 4 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.60 118.90 3.70 0.60 N 94 5 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.17 119.90 6.27 0.70 N 95 5 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 125.99 119.90 6.09 0.70 N 96 5 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 124.48 118.60 5.88 0.60 N 97 5 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.45 119.90 6.55 0.70 N 98 5 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 124.03 119.90 4.13 0.60 N 99 5 C5 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 124.10 128.60 -4.50 0.60 N 100 5 N1 A G 10 ? ? C2 A G 10 ? ? N3 A G 10 ? ? 119.94 123.90 -3.96 0.60 N 101 5 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.96 119.90 7.06 0.70 N 102 5 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.10 119.90 6.20 0.70 N 103 5 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 123.54 118.90 4.64 0.60 N 104 5 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 127.03 119.90 7.13 0.70 N 105 5 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 124.54 118.60 5.94 0.60 N 106 5 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 126.02 119.90 6.12 0.70 N 107 5 "C3'" A G 15 ? ? "O3'" A G 15 ? ? P A A 16 ? ? 128.03 119.70 8.33 1.20 Y 108 5 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 124.07 118.60 5.47 0.60 N 109 5 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.81 118.60 5.21 0.60 N 110 5 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.05 119.90 6.15 0.70 N 111 5 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 122.32 118.60 3.72 0.60 N 112 5 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 126.80 119.90 6.90 0.70 N 113 5 C6 A C 25 ? ? N1 A C 25 ? ? C2 A C 25 ? ? 117.68 120.30 -2.62 0.40 N 114 5 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 123.15 118.90 4.25 0.60 N 115 6 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.67 119.90 6.77 0.70 N 116 6 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.47 108.50 4.97 0.70 N 117 6 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 124.83 119.90 4.93 0.70 N 118 6 "C3'" A G 5 ? ? "O3'" A G 5 ? ? P A A 6 ? ? 130.93 119.70 11.23 1.20 Y 119 6 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 123.88 118.60 5.28 0.60 N 120 6 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.62 118.90 3.72 0.60 N 121 6 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.49 119.90 6.59 0.70 N 122 6 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 125.92 119.90 6.02 0.70 N 123 6 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.40 119.90 6.50 0.70 N 124 6 C6 A C 12 ? ? N1 A C 12 ? ? C2 A C 12 ? ? 117.89 120.30 -2.41 0.40 N 125 6 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 123.54 118.90 4.64 0.60 N 126 6 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.21 119.90 5.31 0.70 N 127 6 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.70 118.60 5.10 0.60 N 128 6 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.04 119.90 5.14 0.70 N 129 6 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 122.21 118.60 3.61 0.60 N 130 6 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 122.67 118.60 4.07 0.60 N 131 6 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.69 119.90 6.79 0.70 N 132 6 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.46 119.90 4.56 0.60 N 133 6 C5 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.11 128.60 -4.49 0.60 N 134 6 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 123.79 118.60 5.19 0.60 N 135 6 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 125.58 119.90 5.68 0.70 N 136 6 N1 A G 23 ? ? C6 A G 23 ? ? O6 A G 23 ? ? 123.59 119.90 3.69 0.60 N 137 6 C6 A C 25 ? ? N1 A C 25 ? ? C2 A C 25 ? ? 117.73 120.30 -2.57 0.40 N 138 6 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.84 118.90 3.94 0.60 N 139 6 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.55 118.90 3.65 0.60 N 140 7 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.25 119.90 6.35 0.70 N 141 7 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 125.93 119.90 6.03 0.70 N 142 7 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 125.16 118.60 6.56 0.60 N 143 7 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.70 118.90 3.80 0.60 N 144 7 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.22 119.90 6.32 0.70 N 145 7 C5 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 124.81 128.60 -3.79 0.60 N 146 7 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.52 119.90 6.62 0.70 N 147 7 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.07 119.90 6.17 0.70 N 148 7 N1 A G 11 ? ? C6 A G 11 ? ? O6 A G 11 ? ? 123.64 119.90 3.74 0.60 N 149 7 C5 A G 11 ? ? C6 A G 11 ? ? O6 A G 11 ? ? 124.35 128.60 -4.25 0.60 N 150 7 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.04 108.50 4.54 0.70 N 151 7 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 123.59 118.90 4.69 0.60 N 152 7 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 126.59 119.90 6.69 0.70 N 153 7 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.79 118.60 5.19 0.60 N 154 7 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.85 119.90 5.95 0.70 N 155 7 N9 A A 16 ? ? "C1'" A A 16 ? ? "C2'" A A 16 ? ? 122.44 114.00 8.44 1.30 N 156 7 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 124.24 118.60 5.64 0.60 N 157 7 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.08 118.60 4.48 0.60 N 158 7 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.61 119.90 6.71 0.70 N 159 7 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.03 119.90 4.13 0.60 N 160 7 C5 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.48 128.60 -4.12 0.60 N 161 7 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 124.38 118.60 5.78 0.60 N 162 7 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 126.02 119.90 6.12 0.70 N 163 7 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 112.74 108.50 4.24 0.70 N 164 7 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.88 118.90 3.98 0.60 N 165 7 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.69 118.90 3.79 0.60 N 166 8 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.24 119.90 6.34 0.70 N 167 8 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 126.09 119.90 6.19 0.70 N 168 8 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 124.53 118.60 5.93 0.60 N 169 8 C6 A C 7 ? ? N1 A C 7 ? ? C2 A C 7 ? ? 117.90 120.30 -2.40 0.40 N 170 8 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.74 118.90 3.84 0.60 N 171 8 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 126.18 119.90 6.28 0.70 N 172 8 C2 A G 10 ? ? N3 A G 10 ? ? C4 A G 10 ? ? 115.01 111.90 3.11 0.50 N 173 8 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 126.29 119.90 6.39 0.70 N 174 8 "C1'" A G 11 ? ? "O4'" A G 11 ? ? "C4'" A G 11 ? ? 104.77 109.70 -4.93 0.70 N 175 8 "O4'" A G 11 ? ? "C1'" A G 11 ? ? N9 A G 11 ? ? 118.73 108.50 10.23 0.70 N 176 8 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.97 119.90 7.07 0.70 N 177 8 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.60 108.50 5.10 0.70 N 178 8 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 122.91 118.90 4.01 0.60 N 179 8 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.36 119.90 5.46 0.70 N 180 8 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.82 118.60 5.22 0.60 N 181 8 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.54 119.90 5.64 0.70 N 182 8 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 122.66 118.60 4.06 0.60 N 183 8 "C3'" A A 16 ? ? "O3'" A A 16 ? ? P A A 17 ? ? 126.98 119.70 7.28 1.20 Y 184 8 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 122.76 118.60 4.16 0.60 N 185 8 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 125.85 119.90 5.95 0.70 N 186 8 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.23 119.90 4.33 0.60 N 187 8 C5 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 124.14 128.60 -4.46 0.60 N 188 8 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 125.03 118.60 6.43 0.60 N 189 8 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 125.43 119.90 5.53 0.70 N 190 8 "C3'" A U 24 ? ? "O3'" A U 24 ? ? P A C 25 ? ? 127.82 119.70 8.12 1.20 Y 191 8 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.76 118.90 3.86 0.60 N 192 8 N1 A C 26 ? ? C2 A C 26 ? ? O2 A C 26 ? ? 122.59 118.90 3.69 0.60 N 193 9 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 126.50 119.90 6.60 0.70 N 194 9 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.19 108.50 4.69 0.70 N 195 9 N3 A G 5 ? ? C2 A G 5 ? ? N2 A G 5 ? ? 125.06 119.90 5.16 0.70 N 196 9 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 124.41 118.60 5.81 0.60 N 197 9 N3 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 125.44 119.90 5.54 0.70 N 198 9 C5 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 124.80 128.60 -3.80 0.60 N 199 9 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 125.34 119.90 5.44 0.70 N 200 9 N3 A G 11 ? ? C2 A G 11 ? ? N2 A G 11 ? ? 126.51 119.90 6.61 0.70 N 201 9 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 123.00 118.90 4.10 0.60 N 202 9 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 127.15 119.90 7.25 0.70 N 203 9 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 123.51 118.60 4.91 0.60 N 204 9 N3 A G 15 ? ? C2 A G 15 ? ? N2 A G 15 ? ? 125.41 119.90 5.51 0.70 N 205 9 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 123.57 118.60 4.97 0.60 N 206 9 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.69 118.60 5.09 0.60 N 207 9 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 126.48 119.90 6.58 0.70 N 208 9 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 123.87 119.90 3.97 0.60 N 209 9 "C3'" A U 21 ? ? "O3'" A U 21 ? ? P A A 22 ? ? 135.63 119.70 15.93 1.20 Y 210 9 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 123.57 118.60 4.97 0.60 N 211 9 "C3'" A A 22 ? ? "O3'" A A 22 ? ? P A G 23 ? ? 135.01 119.70 15.31 1.20 Y 212 9 N3 A G 23 ? ? C2 A G 23 ? ? N2 A G 23 ? ? 125.94 119.90 6.04 0.70 N 213 9 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.80 118.90 3.90 0.60 N # _pdbx_nmr_ensemble.entry_id 1NEM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1NEM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10mM NA3PO4' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_details.entry_id 1NEM _pdbx_nmr_details.text ;EXPERIMENTS CONDUCTED IN D2O: 2D NOESY (50MS,120MS,200MS,300MS) PHASE-SENSITIVE COSY, TOCSY, (1H)- (13)C HSQC 3D (1H)-(13)C NOESY-HMQC (120MS, 300MS) 3D HCCH- COSY 3D HCCH-TOCSY 2D (1H)-(13)C HCCH-TOCSY (65MS) 2D (1H)-(31)P CORRELATION 3D (1H)-(13)C-(31)P CORRELATION ; # _pdbx_nmr_refine.entry_id 1NEM _pdbx_nmr_refine.method 'DISTANCE RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version 3.1 _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BDG C5 C N R 38 BDG O5 O N N 39 BDG C1 C N S 40 BDG O1 O N N 41 BDG C2 C N R 42 BDG N2 N N N 43 BDG C3 C N R 44 BDG O3 O N N 45 BDG C4 C N S 46 BDG O4 O N N 47 BDG C6 C N N 48 BDG N6 N N N 49 BDG H5 H N N 50 BDG H1 H N N 51 BDG HO1 H N N 52 BDG H2 H N N 53 BDG HN21 H N N 54 BDG HN22 H N N 55 BDG H3 H N N 56 BDG HO3 H N N 57 BDG H4 H N N 58 BDG HO4 H N N 59 BDG H61 H N N 60 BDG H62 H N N 61 BDG HN61 H N N 62 BDG HN62 H N N 63 BDR C4 C N R 64 BDR O4 O N N 65 BDR C1 C N R 66 BDR O1 O N N 67 BDR C2 C N R 68 BDR O2 O N N 69 BDR C3 C N S 70 BDR O3 O N N 71 BDR C5 C N N 72 BDR O5 O N N 73 BDR H4 H N N 74 BDR H1 H N N 75 BDR HO1 H N N 76 BDR H2 H N N 77 BDR HO2 H N N 78 BDR H3 H N N 79 BDR HO3 H N N 80 BDR H51 H N N 81 BDR H52 H N N 82 BDR HO5 H N N 83 C OP3 O N N 84 C P P N N 85 C OP1 O N N 86 C OP2 O N N 87 C "O5'" O N N 88 C "C5'" C N N 89 C "C4'" C N R 90 C "O4'" O N N 91 C "C3'" C N S 92 C "O3'" O N N 93 C "C2'" C N R 94 C "O2'" O N N 95 C "C1'" C N R 96 C N1 N N N 97 C C2 C N N 98 C O2 O N N 99 C N3 N N N 100 C C4 C N N 101 C N4 N N N 102 C C5 C N N 103 C C6 C N N 104 C HOP3 H N N 105 C HOP2 H N N 106 C "H5'" H N N 107 C "H5''" H N N 108 C "H4'" H N N 109 C "H3'" H N N 110 C "HO3'" H N N 111 C "H2'" H N N 112 C "HO2'" H N N 113 C "H1'" H N N 114 C H41 H N N 115 C H42 H N N 116 C H5 H N N 117 C H6 H N N 118 G OP3 O N N 119 G P P N N 120 G OP1 O N N 121 G OP2 O N N 122 G "O5'" O N N 123 G "C5'" C N N 124 G "C4'" C N R 125 G "O4'" O N N 126 G "C3'" C N S 127 G "O3'" O N N 128 G "C2'" C N R 129 G "O2'" O N N 130 G "C1'" C N R 131 G N9 N Y N 132 G C8 C Y N 133 G N7 N Y N 134 G C5 C Y N 135 G C6 C N N 136 G O6 O N N 137 G N1 N N N 138 G C2 C N N 139 G N2 N N N 140 G N3 N N N 141 G C4 C Y N 142 G HOP3 H N N 143 G HOP2 H N N 144 G "H5'" H N N 145 G "H5''" H N N 146 G "H4'" H N N 147 G "H3'" H N N 148 G "HO3'" H N N 149 G "H2'" H N N 150 G "HO2'" H N N 151 G "H1'" H N N 152 G H8 H N N 153 G H1 H N N 154 G H21 H N N 155 G H22 H N N 156 IDG C5 C N S 157 IDG O5 O N N 158 IDG C1 C N S 159 IDG O1 O N N 160 IDG C2 C N R 161 IDG N2 N N N 162 IDG C3 C N R 163 IDG O3 O N N 164 IDG C4 C N S 165 IDG O4 O N N 166 IDG C6 C N N 167 IDG N6 N N N 168 IDG H5 H N N 169 IDG H1 H N N 170 IDG HO1 H N N 171 IDG H2 H N N 172 IDG HN21 H N N 173 IDG HN22 H N N 174 IDG H3 H N N 175 IDG HO3 H N N 176 IDG H4 H N N 177 IDG HO4 H N N 178 IDG H61 H N N 179 IDG H62 H N N 180 IDG HN61 H N N 181 IDG HN62 H N N 182 NEB C1 C N R 183 NEB N1 N N N 184 NEB C2 C N N 185 NEB C3 C N S 186 NEB N3 N N N 187 NEB C4 C N R 188 NEB O4 O N N 189 NEB C5 C N S 190 NEB O5 O N N 191 NEB C6 C N S 192 NEB O6 O N N 193 NEB H1 H N N 194 NEB H11 H N N 195 NEB H12 H N N 196 NEB H13 H N N 197 NEB H21 H N N 198 NEB H22 H N N 199 NEB H3 H N N 200 NEB H31 H N N 201 NEB H32 H N N 202 NEB H4 H N N 203 NEB HO4 H N N 204 NEB H5 H N N 205 NEB HO5 H N N 206 NEB H6 H N N 207 NEB HO6 H N N 208 U OP3 O N N 209 U P P N N 210 U OP1 O N N 211 U OP2 O N N 212 U "O5'" O N N 213 U "C5'" C N N 214 U "C4'" C N R 215 U "O4'" O N N 216 U "C3'" C N S 217 U "O3'" O N N 218 U "C2'" C N R 219 U "O2'" O N N 220 U "C1'" C N R 221 U N1 N N N 222 U C2 C N N 223 U O2 O N N 224 U N3 N N N 225 U C4 C N N 226 U O4 O N N 227 U C5 C N N 228 U C6 C N N 229 U HOP3 H N N 230 U HOP2 H N N 231 U "H5'" H N N 232 U "H5''" H N N 233 U "H4'" H N N 234 U "H3'" H N N 235 U "HO3'" H N N 236 U "H2'" H N N 237 U "HO2'" H N N 238 U "H1'" H N N 239 U H3 H N N 240 U H5 H N N 241 U H6 H N N 242 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 BDG C5 O5 sing N N 40 BDG C5 C4 sing N N 41 BDG C5 C6 sing N N 42 BDG C5 H5 sing N N 43 BDG O5 C1 sing N N 44 BDG C1 O1 sing N N 45 BDG C1 C2 sing N N 46 BDG C1 H1 sing N N 47 BDG O1 HO1 sing N N 48 BDG C2 N2 sing N N 49 BDG C2 C3 sing N N 50 BDG C2 H2 sing N N 51 BDG N2 HN21 sing N N 52 BDG N2 HN22 sing N N 53 BDG C3 O3 sing N N 54 BDG C3 C4 sing N N 55 BDG C3 H3 sing N N 56 BDG O3 HO3 sing N N 57 BDG C4 O4 sing N N 58 BDG C4 H4 sing N N 59 BDG O4 HO4 sing N N 60 BDG C6 N6 sing N N 61 BDG C6 H61 sing N N 62 BDG C6 H62 sing N N 63 BDG N6 HN61 sing N N 64 BDG N6 HN62 sing N N 65 BDR C4 O4 sing N N 66 BDR C4 C3 sing N N 67 BDR C4 C5 sing N N 68 BDR C4 H4 sing N N 69 BDR O4 C1 sing N N 70 BDR C1 O1 sing N N 71 BDR C1 C2 sing N N 72 BDR C1 H1 sing N N 73 BDR O1 HO1 sing N N 74 BDR C2 O2 sing N N 75 BDR C2 C3 sing N N 76 BDR C2 H2 sing N N 77 BDR O2 HO2 sing N N 78 BDR C3 O3 sing N N 79 BDR C3 H3 sing N N 80 BDR O3 HO3 sing N N 81 BDR C5 O5 sing N N 82 BDR C5 H51 sing N N 83 BDR C5 H52 sing N N 84 BDR O5 HO5 sing N N 85 C OP3 P sing N N 86 C OP3 HOP3 sing N N 87 C P OP1 doub N N 88 C P OP2 sing N N 89 C P "O5'" sing N N 90 C OP2 HOP2 sing N N 91 C "O5'" "C5'" sing N N 92 C "C5'" "C4'" sing N N 93 C "C5'" "H5'" sing N N 94 C "C5'" "H5''" sing N N 95 C "C4'" "O4'" sing N N 96 C "C4'" "C3'" sing N N 97 C "C4'" "H4'" sing N N 98 C "O4'" "C1'" sing N N 99 C "C3'" "O3'" sing N N 100 C "C3'" "C2'" sing N N 101 C "C3'" "H3'" sing N N 102 C "O3'" "HO3'" sing N N 103 C "C2'" "O2'" sing N N 104 C "C2'" "C1'" sing N N 105 C "C2'" "H2'" sing N N 106 C "O2'" "HO2'" sing N N 107 C "C1'" N1 sing N N 108 C "C1'" "H1'" sing N N 109 C N1 C2 sing N N 110 C N1 C6 sing N N 111 C C2 O2 doub N N 112 C C2 N3 sing N N 113 C N3 C4 doub N N 114 C C4 N4 sing N N 115 C C4 C5 sing N N 116 C N4 H41 sing N N 117 C N4 H42 sing N N 118 C C5 C6 doub N N 119 C C5 H5 sing N N 120 C C6 H6 sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 IDG C5 O5 sing N N 162 IDG C5 C4 sing N N 163 IDG C5 C6 sing N N 164 IDG C5 H5 sing N N 165 IDG O5 C1 sing N N 166 IDG C1 O1 sing N N 167 IDG C1 C2 sing N N 168 IDG C1 H1 sing N N 169 IDG O1 HO1 sing N N 170 IDG C2 N2 sing N N 171 IDG C2 C3 sing N N 172 IDG C2 H2 sing N N 173 IDG N2 HN21 sing N N 174 IDG N2 HN22 sing N N 175 IDG C3 O3 sing N N 176 IDG C3 C4 sing N N 177 IDG C3 H3 sing N N 178 IDG O3 HO3 sing N N 179 IDG C4 O4 sing N N 180 IDG C4 H4 sing N N 181 IDG O4 HO4 sing N N 182 IDG C6 N6 sing N N 183 IDG C6 H61 sing N N 184 IDG C6 H62 sing N N 185 IDG N6 HN61 sing N N 186 IDG N6 HN62 sing N N 187 NEB C1 N1 sing N N 188 NEB C1 C2 sing N N 189 NEB C1 C6 sing N N 190 NEB C1 H1 sing N N 191 NEB N1 H11 sing N N 192 NEB N1 H12 sing N N 193 NEB N1 H13 sing N N 194 NEB C2 C3 sing N N 195 NEB C2 H21 sing N N 196 NEB C2 H22 sing N N 197 NEB C3 N3 sing N N 198 NEB C3 C4 sing N N 199 NEB C3 H3 sing N N 200 NEB N3 H31 sing N N 201 NEB N3 H32 sing N N 202 NEB C4 O4 sing N N 203 NEB C4 C5 sing N N 204 NEB C4 H4 sing N N 205 NEB O4 HO4 sing N N 206 NEB C5 O5 sing N N 207 NEB C5 C6 sing N N 208 NEB C5 H5 sing N N 209 NEB O5 HO5 sing N N 210 NEB C6 O6 sing N N 211 NEB C6 H6 sing N N 212 NEB O6 HO6 sing N N 213 U OP3 P sing N N 214 U OP3 HOP3 sing N N 215 U P OP1 doub N N 216 U P OP2 sing N N 217 U P "O5'" sing N N 218 U OP2 HOP2 sing N N 219 U "O5'" "C5'" sing N N 220 U "C5'" "C4'" sing N N 221 U "C5'" "H5'" sing N N 222 U "C5'" "H5''" sing N N 223 U "C4'" "O4'" sing N N 224 U "C4'" "C3'" sing N N 225 U "C4'" "H4'" sing N N 226 U "O4'" "C1'" sing N N 227 U "C3'" "O3'" sing N N 228 U "C3'" "C2'" sing N N 229 U "C3'" "H3'" sing N N 230 U "O3'" "HO3'" sing N N 231 U "C2'" "O2'" sing N N 232 U "C2'" "C1'" sing N N 233 U "C2'" "H2'" sing N N 234 U "O2'" "HO2'" sing N N 235 U "C1'" N1 sing N N 236 U "C1'" "H1'" sing N N 237 U N1 C2 sing N N 238 U N1 C6 sing N N 239 U C2 O2 doub N N 240 U C2 N3 sing N N 241 U N3 C4 sing N N 242 U N3 H3 sing N N 243 U C4 O4 doub N N 244 U C4 C5 sing N N 245 U C5 C6 doub N N 246 U C5 H5 sing N N 247 U C6 H6 sing N N 248 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NEM 'double helix' 1NEM 'a-form double helix' 1NEM 'hairpin loop' 1NEM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 23 1_555 -0.810 -0.237 -0.699 -25.909 -17.333 -4.016 1 A_G4:C26_A A 4 ? A 26 ? 19 1 1 A G 2 1_555 A C 22 1_555 -0.312 -0.150 0.031 1.215 -8.974 -7.194 2 A_G5:C25_A A 5 ? A 25 ? 19 1 1 A A 3 1_555 A U 21 1_555 -0.180 0.077 0.176 6.372 -5.816 -10.697 3 A_A6:U24_A A 6 ? A 24 ? 20 1 1 A C 4 1_555 A G 20 1_555 0.777 -0.147 0.186 6.060 -15.505 -5.784 4 A_C7:G23_A A 7 ? A 23 ? 19 1 1 A U 5 1_555 A A 19 1_555 0.107 -0.121 0.344 3.615 -10.597 3.202 5 A_U8:A22_A A 8 ? A 22 ? 20 1 1 A G 6 1_555 A U 18 1_555 -2.556 -0.737 -0.769 3.312 1.483 -5.271 6 A_G9:U21_A A 9 ? A 21 ? 28 ? 1 A G 7 1_555 A U 17 1_555 -1.480 -0.512 -0.517 1.312 -5.138 -8.984 7 A_G10:U20_A A 10 ? A 20 ? 28 1 1 A G 8 1_555 A U 16 1_555 -1.997 -0.485 -0.741 -13.590 -8.217 1.211 8 A_G11:U19_A A 11 ? A 19 ? 28 1 1 A C 9 1_555 A G 15 1_555 0.606 -0.182 0.162 -4.290 5.668 -7.488 9 A_C12:G18_A A 12 ? A 18 ? 19 1 1 A G 10 1_555 A A 14 1_555 6.747 -4.571 1.045 9.349 16.880 -10.818 10 A_G13:A17_A A 13 ? A 17 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 23 1_555 A G 2 1_555 A C 22 1_555 0.550 0.087 2.648 -7.175 7.351 35.726 -0.646 -1.629 2.465 11.687 11.408 37.127 1 AA_G4G5:C25C26_AA A 4 ? A 26 ? A 5 ? A 25 ? 1 A G 2 1_555 A C 22 1_555 A A 3 1_555 A U 21 1_555 -0.590 -2.135 2.931 -4.171 4.521 32.073 -4.476 0.426 2.666 8.090 7.463 32.642 2 AA_G5A6:U24C25_AA A 5 ? A 25 ? A 6 ? A 24 ? 1 A A 3 1_555 A U 21 1_555 A C 4 1_555 A G 20 1_555 -0.080 -1.808 3.266 -1.891 1.253 36.321 -3.067 -0.133 3.204 2.008 3.029 36.389 3 AA_A6C7:G23U24_AA A 6 ? A 24 ? A 7 ? A 23 ? 1 A C 4 1_555 A G 20 1_555 A U 5 1_555 A A 19 1_555 0.259 -1.950 3.099 -0.683 6.561 33.777 -4.210 -0.534 2.679 11.160 1.162 34.397 4 AA_C7U8:A22G23_AA A 7 ? A 23 ? A 8 ? A 22 ? 1 A U 5 1_555 A A 19 1_555 A G 6 1_555 A U 18 1_555 -0.254 -1.960 3.327 -0.110 6.806 23.721 -6.535 0.562 2.670 16.136 0.260 24.665 5 AA_U8G9:U21A22_AA A 8 ? A 22 ? A 9 ? A 21 ? 1 A G 6 1_555 A U 18 1_555 A G 7 1_555 A U 17 1_555 0.054 -1.585 3.353 -7.572 6.113 38.872 -3.008 -0.937 3.017 9.015 11.166 40.026 6 AA_G9G10:U20U21_AA A 9 ? A 21 ? A 10 ? A 20 ? 1 A G 7 1_555 A U 17 1_555 A G 8 1_555 A U 16 1_555 0.612 -2.118 3.533 -3.399 14.935 35.597 -4.947 -1.322 2.420 23.154 5.269 38.654 7 AA_G10G11:U19U20_AA A 10 ? A 20 ? A 11 ? A 19 ? 1 A G 8 1_555 A U 16 1_555 A C 9 1_555 A G 15 1_555 -0.331 -1.647 3.057 -8.909 2.191 41.288 -2.495 -0.394 2.975 3.062 12.450 42.251 8 AA_G11C12:G18U19_AA A 11 ? A 19 ? A 12 ? A 18 ? 1 A C 9 1_555 A G 15 1_555 A G 10 1_555 A A 14 1_555 0.666 -0.963 2.813 -2.779 11.096 53.044 -1.622 -0.872 2.543 12.263 3.071 54.176 9 AA_C12G13:A17G18_AA A 12 ? A 18 ? A 13 ? A 17 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BDR 1 n 2 IDG 2 n # _atom_sites.entry_id 1NEM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_