HEADER DNA BINDING PROTEIN 24-AUG-95 1NER TITLE SOLUTION STRUCTURE OF THE MU NER PROTEIN BY MULTIDIMENSIONAL NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN NER; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677 KEYWDS DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.M.CLORE,T.E.STRZELECKA,A.M.GRONENBORN REVDAT 3 23-FEB-22 1NER 1 KEYWDS REMARK REVDAT 2 24-FEB-09 1NER 1 VERSN REVDAT 1 07-DEC-95 1NER 0 JRNL AUTH T.E.STRZELECKA,G.M.CLORE,A.M.GRONENBORN JRNL TITL THE SOLUTION STRUCTURE OF THE MU NER PROTEIN REVEALS A JRNL TITL 2 HELIX-TURN-HELIX DNA RECOGNITION MOTIF. JRNL REF STRUCTURE V. 3 1087 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 8590003 JRNL DOI 10.1016/S0969-2126(01)00244-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.GRONENBORN,P.T.WINGFIELD,G.M.CLORE REMARK 1 TITL DETERMINATION OF THE SECONDARY STRUCTURE OF THE DNA BINDING REMARK 1 TITL 2 PROTEIN NER FROM PHAGE MU USING 1H HOMONUCLEAR AND 15N-1H REMARK 1 TITL 3 HETERONUCLEAR NMR SPECTROSCOPY REMARK 1 REF BIOCHEMISTRY V. 28 5081 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D STRUCTURE OF THE MU NER PROTEIN BY MULTI-DIMENSIONAL REMARK 3 HETERONUCLEAR NMR IS BASED ON 1546 EXPERIMENTAL RESTRAINTS REMARK 3 COMPRISING THE FOLLOWING: 944 INTERPROTON DISTANCE REMARK 3 RESTRAINTS [251 SEQUENTIAL; 202 SHORT RANGE (1<|I-J|<=5; REMARK 3 157 LONG RANGE (|I-J|>5); AND 334 INTRARESIDUE]; 40 REMARK 3 DISTANCE RESTRAINTS FOR 20 BACKBONE HYDROGEN BONDS; 89 REMARK 3 TORSION ANGLE RESTRAINTS 56 PHI, 27 CH1 AND 6 CHI2); 46 3 REMARK 3 BOND HN-HA COUPLING CONSTANTS; 140 SECONDARY 13C SHIFTS (72 REMARK 3 CA AND 68 CB); 287 1H CHEMICAL SHIFTS (74 HA, 39 METHYL AND REMARK 3 174 OTHER, WITH NO EXCHANGEABLE PROTON SHIFTS). REMARK 3 REMARK 3 THE STRUCTURE WAS DETERMINED BY SIMULATED ANNEALING REMARK 3 [NILGES, CLORE AND GRONENBORN (1988) FEBS LETT. 229, 317 - REMARK 3 324] USING THE PROGRAM X-PLOR (BRUNGER) MODIFIED TO REMARK 3 INCORPORATE COUPLING CONSTANT [GARRETT ET AL. AND CLORE REMARK 3 (1994) J. MAGN. RESON. B104, 99 - 103], CARBON CHEMICAL REMARK 3 SHIFT [KUSZEWSKI, QIN, GRONENBORN AND CLORE (1995) J. MAGN. REMARK 3 RESON. B106, 92 - 96] AND PROTON CHEMICAL SHIFT REMARK 3 [KUSZEWSKI, GRONENBORN AND CLORE (1995) J. MAGN. RESON. REMARK 3 B107, 293 - 297] RESTRAINTS. REMARK 3 REMARK 3 ENTRY 1NEQ IS THE RESTRAINED REGULARIZED MEAN STRUCTURE REMARK 3 OBTAINED BY AVERAGING THE COORDINATES OF THE 30 SIMULATED REMARK 3 ANNEALING STRUCTURES BEST FITTED TO EACH OTHER REMARK 3 (RESIDUES 8 - 66). THE N- AND C-TERMINI ARE DISORDERED, REMARK 3 AND THE NUMBER IN THE LAST COLUMN (THE B- FACTOR COLUMN) REMARK 3 GIVES THE AVERAGE RMS TO THE MEAN COORDINATE POSITIONS. REMARK 4 REMARK 4 1NER COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175261. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -92.44 52.19 REMARK 500 1 ASN A 3 -114.82 57.79 REMARK 500 1 GLU A 4 -6.40 -166.38 REMARK 500 1 LYS A 5 29.67 -77.01 REMARK 500 1 ALA A 6 -105.03 -57.66 REMARK 500 1 HIS A 10 162.63 -41.13 REMARK 500 1 ARG A 21 -94.51 -95.36 REMARK 500 1 LYS A 22 50.92 -154.79 REMARK 500 1 ALA A 40 -74.09 -55.77 REMARK 500 1 ASN A 41 -1.04 -56.35 REMARK 500 1 HIS A 46 99.11 -56.22 REMARK 500 1 TRP A 47 70.50 -160.73 REMARK 500 1 THR A 60 -169.83 -110.37 REMARK 500 1 SER A 68 5.82 -58.11 REMARK 500 1 ALA A 72 3.10 55.62 REMARK 500 2 ASN A 3 -163.92 51.81 REMARK 500 2 LYS A 5 84.03 -169.57 REMARK 500 2 ALA A 6 -176.74 49.29 REMARK 500 2 ASP A 8 -143.78 -75.33 REMARK 500 2 HIS A 10 167.59 -47.15 REMARK 500 2 LYS A 19 -9.07 -56.24 REMARK 500 2 ARG A 21 -97.13 -94.03 REMARK 500 2 LYS A 22 59.08 -155.08 REMARK 500 2 LEU A 25 -16.70 -47.15 REMARK 500 2 ALA A 35 164.44 -48.88 REMARK 500 2 HIS A 46 86.99 -64.59 REMARK 500 2 TRP A 47 73.65 -160.94 REMARK 500 2 THR A 60 -169.39 -111.02 REMARK 500 2 TYR A 70 -107.13 -118.34 REMARK 500 2 GLN A 71 -102.66 -158.76 REMARK 500 2 ALA A 72 -36.23 -148.10 REMARK 500 3 SER A 2 -108.62 -159.63 REMARK 500 3 ASN A 3 45.49 -162.30 REMARK 500 3 GLU A 4 108.58 56.24 REMARK 500 3 LYS A 5 -173.50 48.61 REMARK 500 3 ALA A 6 -89.04 -178.10 REMARK 500 3 ARG A 7 -101.16 -94.12 REMARK 500 3 ASP A 8 -148.15 -74.97 REMARK 500 3 HIS A 10 174.04 -47.82 REMARK 500 3 ARG A 21 -95.02 -98.04 REMARK 500 3 LYS A 22 49.27 -155.01 REMARK 500 3 ALA A 35 161.26 -45.67 REMARK 500 3 ALA A 40 -71.44 -56.09 REMARK 500 3 ASN A 41 -7.91 -58.49 REMARK 500 3 HIS A 46 79.72 -65.47 REMARK 500 3 TRP A 47 71.60 -165.44 REMARK 500 3 THR A 60 -164.97 -111.45 REMARK 500 3 GLU A 63 -4.69 -57.60 REMARK 500 3 GLN A 71 77.46 -160.33 REMARK 500 3 ALA A 72 -65.44 -169.51 REMARK 500 REMARK 500 THIS ENTRY HAS 438 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NEQ RELATED DB: PDB DBREF 1NER A 1 74 UNP P06020 NER_BPMU 1 74 SEQRES 1 A 74 CYS SER ASN GLU LYS ALA ARG ASP TRP HIS ARG ALA ASP SEQRES 2 A 74 VAL ILE ALA GLY LEU LYS LYS ARG LYS LEU SER LEU SER SEQRES 3 A 74 ALA LEU SER ARG GLN PHE GLY TYR ALA PRO THR THR LEU SEQRES 4 A 74 ALA ASN ALA LEU GLU ARG HIS TRP PRO LYS GLY GLU GLN SEQRES 5 A 74 ILE ILE ALA ASN ALA LEU GLU THR LYS PRO GLU VAL ILE SEQRES 6 A 74 TRP PRO SER ARG TYR GLN ALA GLY GLU HELIX 1 1 ARG A 11 LEU A 18 1 8 HELIX 2 2 LEU A 25 PHE A 32 1 8 HELIX 3 3 PRO A 36 LEU A 43 1 8 HELIX 4 4 PRO A 48 LEU A 58 1 11 HELIX 5 5 PRO A 62 ILE A 65 1 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1