HEADER OXIDOREDUCTASE 15-DEC-02 1NFQ TITLE RV2002 GENE PRODUCT FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE RV2002; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RV2002 GENE PRODUCT; COMPND 5 EC: 1.1.1.53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIRECTED EVOLUTION, SDR, GFP, HYDROXYSTEROID DEHYDROGENASE, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.YANG,M.S.PARK,G.S.WALDO,S.W.SUH,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 6 10-NOV-21 1NFQ 1 REMARK SEQADV REVDAT 5 03-JUL-13 1NFQ 1 HET HETATM HETNAM VERSN REVDAT 4 24-FEB-09 1NFQ 1 VERSN REVDAT 3 01-FEB-05 1NFQ 1 AUTHOR KEYWDS REMARK REVDAT 2 04-MAR-03 1NFQ 1 JRNL REVDAT 1 30-DEC-02 1NFQ 0 JRNL AUTH J.K.YANG,M.S.PARK,G.S.WALDO,S.W.SUH JRNL TITL DIRECTED EVOLUTION APPROACH TO A STRUCTURAL GENOMICS JRNL TITL 2 PROJECT: RV2002 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 455 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12524453 JRNL DOI 10.1073/PNAS.0137017100 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 303293.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 38884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3918 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5534 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 657 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 260 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.68000 REMARK 3 B22 (A**2) : 4.68000 REMARK 3 B33 (A**2) : -9.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.910 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.120 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.320 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 51.32 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.ADD.PARAM REMARK 3 PARAMETER FILE 2 : AST.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.ADD.TOP REMARK 3 TOPOLOGY FILE 2 : AST.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG400, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.08150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.08150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.62300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.08150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.08150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.62300 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 61.08150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.08150 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.62300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 61.08150 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 61.08150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.62300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 246 REMARK 465 PHE A 247 REMARK 465 GLY A 248 REMARK 465 ALA A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 VAL A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 GLN A 255 REMARK 465 PRO A 256 REMARK 465 GLU A 257 REMARK 465 TRP A 258 REMARK 465 VAL A 259 REMARK 465 THR A 260 REMARK 465 MET B 1 REMARK 465 ASP B 246 REMARK 465 PHE B 247 REMARK 465 GLY B 248 REMARK 465 ALA B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 VAL B 252 REMARK 465 SER B 253 REMARK 465 SER B 254 REMARK 465 GLN B 255 REMARK 465 PRO B 256 REMARK 465 GLU B 257 REMARK 465 TRP B 258 REMARK 465 VAL B 259 REMARK 465 THR B 260 REMARK 465 MET C 1 REMARK 465 ASP C 246 REMARK 465 PHE C 247 REMARK 465 GLY C 248 REMARK 465 ALA C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 VAL C 252 REMARK 465 SER C 253 REMARK 465 SER C 254 REMARK 465 GLN C 255 REMARK 465 PRO C 256 REMARK 465 GLU C 257 REMARK 465 TRP C 258 REMARK 465 VAL C 259 REMARK 465 THR C 260 REMARK 465 MET D 1 REMARK 465 ASP D 246 REMARK 465 PHE D 247 REMARK 465 GLY D 248 REMARK 465 ALA D 249 REMARK 465 VAL D 250 REMARK 465 GLU D 251 REMARK 465 VAL D 252 REMARK 465 SER D 253 REMARK 465 SER D 254 REMARK 465 GLN D 255 REMARK 465 PRO D 256 REMARK 465 GLU D 257 REMARK 465 TRP D 258 REMARK 465 VAL D 259 REMARK 465 THR D 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP C 53 CB ASP C 53 CG 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 53 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -171.46 -170.18 REMARK 500 ALA A 52 -121.72 67.95 REMARK 500 ASP A 99 34.99 -96.64 REMARK 500 SER A 139 -134.34 -100.94 REMARK 500 ASP B 38 -171.49 -170.45 REMARK 500 ALA B 52 -102.22 17.07 REMARK 500 ASP B 99 34.52 -98.24 REMARK 500 SER B 139 -134.55 -100.88 REMARK 500 ALA C 52 -131.71 50.97 REMARK 500 ASP C 99 33.88 -96.25 REMARK 500 SER C 139 -134.34 -102.02 REMARK 500 ASP D 38 -171.79 -170.74 REMARK 500 ALA D 52 -51.93 -16.28 REMARK 500 ASP D 99 35.42 -99.07 REMARK 500 SER D 139 -133.85 -100.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI C 2300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI C 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI D 3300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI D 3401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NFF RELATED DB: PDB REMARK 900 COMPLEXED WITH NAD+ REMARK 900 RELATED ID: 1NFR RELATED DB: PDB REMARK 900 SELENOMETHIONINE SUBSTITUTED STRUCTURE REMARK 900 RELATED ID: RV2002 RELATED DB: TARGETDB DBREF 1NFQ A 1 260 UNP P69167 HSD_MYCTU 1 260 DBREF 1NFQ B 1 260 UNP P69167 HSD_MYCTU 1 260 DBREF 1NFQ C 1 260 UNP P69167 HSD_MYCTU 1 260 DBREF 1NFQ D 1 260 UNP P69167 HSD_MYCTU 1 260 SEQADV 1NFQ THR A 6 UNP P69167 ILE 6 ENGINEERED MUTATION SEQADV 1NFQ MET A 47 UNP P69167 VAL 47 ENGINEERED MUTATION SEQADV 1NFQ LYS A 69 UNP P69167 THR 69 ENGINEERED MUTATION SEQADV 1NFQ THR B 6 UNP P69167 ILE 6 ENGINEERED MUTATION SEQADV 1NFQ MET B 47 UNP P69167 VAL 47 ENGINEERED MUTATION SEQADV 1NFQ LYS B 69 UNP P69167 THR 69 ENGINEERED MUTATION SEQADV 1NFQ THR C 6 UNP P69167 ILE 6 ENGINEERED MUTATION SEQADV 1NFQ MET C 47 UNP P69167 VAL 47 ENGINEERED MUTATION SEQADV 1NFQ LYS C 69 UNP P69167 THR 69 ENGINEERED MUTATION SEQADV 1NFQ THR D 6 UNP P69167 ILE 6 ENGINEERED MUTATION SEQADV 1NFQ MET D 47 UNP P69167 VAL 47 ENGINEERED MUTATION SEQADV 1NFQ LYS D 69 UNP P69167 THR 69 ENGINEERED MUTATION SEQRES 1 A 260 MET SER GLY ARG LEU THR GLY LYS VAL ALA LEU VAL SER SEQRES 2 A 260 GLY GLY ALA ARG GLY MET GLY ALA SER HIS VAL ARG ALA SEQRES 3 A 260 MET VAL ALA GLU GLY ALA LYS VAL VAL PHE GLY ASP ILE SEQRES 4 A 260 LEU ASP GLU GLU GLY LYS ALA MET ALA ALA GLU LEU ALA SEQRES 5 A 260 ASP ALA ALA ARG TYR VAL HIS LEU ASP VAL THR GLN PRO SEQRES 6 A 260 ALA GLN TRP LYS ALA ALA VAL ASP THR ALA VAL THR ALA SEQRES 7 A 260 PHE GLY GLY LEU HIS VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 A 260 LEU ASN ILE GLY THR ILE GLU ASP TYR ALA LEU THR GLU SEQRES 9 A 260 TRP GLN ARG ILE LEU ASP VAL ASN LEU THR GLY VAL PHE SEQRES 10 A 260 LEU GLY ILE ARG ALA VAL VAL LYS PRO MET LYS GLU ALA SEQRES 11 A 260 GLY ARG GLY SER ILE ILE ASN ILE SER SER ILE GLU GLY SEQRES 12 A 260 LEU ALA GLY THR VAL ALA CYS HIS GLY TYR THR ALA THR SEQRES 13 A 260 LYS PHE ALA VAL ARG GLY LEU THR LYS SER THR ALA LEU SEQRES 14 A 260 GLU LEU GLY PRO SER GLY ILE ARG VAL ASN SER ILE HIS SEQRES 15 A 260 PRO GLY LEU VAL LYS THR PRO MET THR ASP TRP VAL PRO SEQRES 16 A 260 GLU ASP ILE PHE GLN THR ALA LEU GLY ARG ALA ALA GLU SEQRES 17 A 260 PRO VAL GLU VAL SER ASN LEU VAL VAL TYR LEU ALA SER SEQRES 18 A 260 ASP GLU SER SER TYR SER THR GLY ALA GLU PHE VAL VAL SEQRES 19 A 260 ASP GLY GLY THR VAL ALA GLY LEU ALA HIS ASN ASP PHE SEQRES 20 A 260 GLY ALA VAL GLU VAL SER SER GLN PRO GLU TRP VAL THR SEQRES 1 B 260 MET SER GLY ARG LEU THR GLY LYS VAL ALA LEU VAL SER SEQRES 2 B 260 GLY GLY ALA ARG GLY MET GLY ALA SER HIS VAL ARG ALA SEQRES 3 B 260 MET VAL ALA GLU GLY ALA LYS VAL VAL PHE GLY ASP ILE SEQRES 4 B 260 LEU ASP GLU GLU GLY LYS ALA MET ALA ALA GLU LEU ALA SEQRES 5 B 260 ASP ALA ALA ARG TYR VAL HIS LEU ASP VAL THR GLN PRO SEQRES 6 B 260 ALA GLN TRP LYS ALA ALA VAL ASP THR ALA VAL THR ALA SEQRES 7 B 260 PHE GLY GLY LEU HIS VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 B 260 LEU ASN ILE GLY THR ILE GLU ASP TYR ALA LEU THR GLU SEQRES 9 B 260 TRP GLN ARG ILE LEU ASP VAL ASN LEU THR GLY VAL PHE SEQRES 10 B 260 LEU GLY ILE ARG ALA VAL VAL LYS PRO MET LYS GLU ALA SEQRES 11 B 260 GLY ARG GLY SER ILE ILE ASN ILE SER SER ILE GLU GLY SEQRES 12 B 260 LEU ALA GLY THR VAL ALA CYS HIS GLY TYR THR ALA THR SEQRES 13 B 260 LYS PHE ALA VAL ARG GLY LEU THR LYS SER THR ALA LEU SEQRES 14 B 260 GLU LEU GLY PRO SER GLY ILE ARG VAL ASN SER ILE HIS SEQRES 15 B 260 PRO GLY LEU VAL LYS THR PRO MET THR ASP TRP VAL PRO SEQRES 16 B 260 GLU ASP ILE PHE GLN THR ALA LEU GLY ARG ALA ALA GLU SEQRES 17 B 260 PRO VAL GLU VAL SER ASN LEU VAL VAL TYR LEU ALA SER SEQRES 18 B 260 ASP GLU SER SER TYR SER THR GLY ALA GLU PHE VAL VAL SEQRES 19 B 260 ASP GLY GLY THR VAL ALA GLY LEU ALA HIS ASN ASP PHE SEQRES 20 B 260 GLY ALA VAL GLU VAL SER SER GLN PRO GLU TRP VAL THR SEQRES 1 C 260 MET SER GLY ARG LEU THR GLY LYS VAL ALA LEU VAL SER SEQRES 2 C 260 GLY GLY ALA ARG GLY MET GLY ALA SER HIS VAL ARG ALA SEQRES 3 C 260 MET VAL ALA GLU GLY ALA LYS VAL VAL PHE GLY ASP ILE SEQRES 4 C 260 LEU ASP GLU GLU GLY LYS ALA MET ALA ALA GLU LEU ALA SEQRES 5 C 260 ASP ALA ALA ARG TYR VAL HIS LEU ASP VAL THR GLN PRO SEQRES 6 C 260 ALA GLN TRP LYS ALA ALA VAL ASP THR ALA VAL THR ALA SEQRES 7 C 260 PHE GLY GLY LEU HIS VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 C 260 LEU ASN ILE GLY THR ILE GLU ASP TYR ALA LEU THR GLU SEQRES 9 C 260 TRP GLN ARG ILE LEU ASP VAL ASN LEU THR GLY VAL PHE SEQRES 10 C 260 LEU GLY ILE ARG ALA VAL VAL LYS PRO MET LYS GLU ALA SEQRES 11 C 260 GLY ARG GLY SER ILE ILE ASN ILE SER SER ILE GLU GLY SEQRES 12 C 260 LEU ALA GLY THR VAL ALA CYS HIS GLY TYR THR ALA THR SEQRES 13 C 260 LYS PHE ALA VAL ARG GLY LEU THR LYS SER THR ALA LEU SEQRES 14 C 260 GLU LEU GLY PRO SER GLY ILE ARG VAL ASN SER ILE HIS SEQRES 15 C 260 PRO GLY LEU VAL LYS THR PRO MET THR ASP TRP VAL PRO SEQRES 16 C 260 GLU ASP ILE PHE GLN THR ALA LEU GLY ARG ALA ALA GLU SEQRES 17 C 260 PRO VAL GLU VAL SER ASN LEU VAL VAL TYR LEU ALA SER SEQRES 18 C 260 ASP GLU SER SER TYR SER THR GLY ALA GLU PHE VAL VAL SEQRES 19 C 260 ASP GLY GLY THR VAL ALA GLY LEU ALA HIS ASN ASP PHE SEQRES 20 C 260 GLY ALA VAL GLU VAL SER SER GLN PRO GLU TRP VAL THR SEQRES 1 D 260 MET SER GLY ARG LEU THR GLY LYS VAL ALA LEU VAL SER SEQRES 2 D 260 GLY GLY ALA ARG GLY MET GLY ALA SER HIS VAL ARG ALA SEQRES 3 D 260 MET VAL ALA GLU GLY ALA LYS VAL VAL PHE GLY ASP ILE SEQRES 4 D 260 LEU ASP GLU GLU GLY LYS ALA MET ALA ALA GLU LEU ALA SEQRES 5 D 260 ASP ALA ALA ARG TYR VAL HIS LEU ASP VAL THR GLN PRO SEQRES 6 D 260 ALA GLN TRP LYS ALA ALA VAL ASP THR ALA VAL THR ALA SEQRES 7 D 260 PHE GLY GLY LEU HIS VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 D 260 LEU ASN ILE GLY THR ILE GLU ASP TYR ALA LEU THR GLU SEQRES 9 D 260 TRP GLN ARG ILE LEU ASP VAL ASN LEU THR GLY VAL PHE SEQRES 10 D 260 LEU GLY ILE ARG ALA VAL VAL LYS PRO MET LYS GLU ALA SEQRES 11 D 260 GLY ARG GLY SER ILE ILE ASN ILE SER SER ILE GLU GLY SEQRES 12 D 260 LEU ALA GLY THR VAL ALA CYS HIS GLY TYR THR ALA THR SEQRES 13 D 260 LYS PHE ALA VAL ARG GLY LEU THR LYS SER THR ALA LEU SEQRES 14 D 260 GLU LEU GLY PRO SER GLY ILE ARG VAL ASN SER ILE HIS SEQRES 15 D 260 PRO GLY LEU VAL LYS THR PRO MET THR ASP TRP VAL PRO SEQRES 16 D 260 GLU ASP ILE PHE GLN THR ALA LEU GLY ARG ALA ALA GLU SEQRES 17 D 260 PRO VAL GLU VAL SER ASN LEU VAL VAL TYR LEU ALA SER SEQRES 18 D 260 ASP GLU SER SER TYR SER THR GLY ALA GLU PHE VAL VAL SEQRES 19 D 260 ASP GLY GLY THR VAL ALA GLY LEU ALA HIS ASN ASP PHE SEQRES 20 D 260 GLY ALA VAL GLU VAL SER SER GLN PRO GLU TRP VAL THR HET NAI A 300 44 HET AOI A 401 21 HET NAI B1300 44 HET AOI B1401 21 HET NAI C2300 44 HET AOI C2401 21 HET NAI D3300 44 HET AOI D3401 21 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM AOI ANDROSTERONE HETSYN NAI NADH HETSYN AOI (3ALPHA,5BETA,8ALPHA,10ALPHA,13ALPHA,14BETA)-3- HETSYN 2 AOI HYDROXYANDROSTAN-17-ONE FORMUL 5 NAI 4(C21 H29 N7 O14 P2) FORMUL 6 AOI 4(C19 H30 O2) FORMUL 13 HOH *238(H2 O) HELIX 1 1 ARG A 17 GLU A 30 1 14 HELIX 2 2 LEU A 40 LEU A 51 1 12 HELIX 3 3 GLN A 64 GLY A 80 1 17 HELIX 4 4 ALA A 101 LEU A 113 1 13 HELIX 5 5 LEU A 113 GLY A 131 1 19 HELIX 6 6 SER A 140 LEU A 144 5 5 HELIX 7 7 CYS A 150 GLY A 172 1 23 HELIX 8 8 GLU A 208 SER A 221 1 14 HELIX 9 9 ASP A 222 SER A 225 5 4 HELIX 10 10 GLY A 237 GLY A 241 5 5 HELIX 11 11 ARG B 17 GLU B 30 1 14 HELIX 12 12 LEU B 40 GLU B 50 1 11 HELIX 13 13 LEU B 51 ASP B 53 5 3 HELIX 14 14 GLN B 64 GLY B 80 1 17 HELIX 15 15 ALA B 101 LEU B 113 1 13 HELIX 16 16 LEU B 113 GLY B 131 1 19 HELIX 17 17 SER B 140 LEU B 144 5 5 HELIX 18 18 CYS B 150 GLY B 172 1 23 HELIX 19 19 GLU B 208 SER B 221 1 14 HELIX 20 20 ASP B 222 SER B 225 5 4 HELIX 21 21 GLY B 237 GLY B 241 5 5 HELIX 22 22 ARG C 17 GLU C 30 1 14 HELIX 23 23 LEU C 40 LEU C 51 1 12 HELIX 24 24 GLN C 64 GLY C 80 1 17 HELIX 25 25 ALA C 101 LEU C 113 1 13 HELIX 26 26 LEU C 113 GLY C 131 1 19 HELIX 27 27 SER C 140 LEU C 144 5 5 HELIX 28 28 CYS C 150 GLY C 172 1 23 HELIX 29 29 GLU C 208 SER C 221 1 14 HELIX 30 30 ASP C 222 SER C 225 5 4 HELIX 31 31 GLY C 237 GLY C 241 5 5 HELIX 32 32 ARG D 17 GLU D 30 1 14 HELIX 33 33 LEU D 40 GLU D 50 1 11 HELIX 34 34 GLN D 64 GLY D 80 1 17 HELIX 35 35 ALA D 101 LEU D 113 1 13 HELIX 36 36 LEU D 113 GLY D 131 1 19 HELIX 37 37 SER D 140 LEU D 144 5 5 HELIX 38 38 CYS D 150 GLY D 172 1 23 HELIX 39 39 GLU D 208 SER D 221 1 14 HELIX 40 40 ASP D 222 SER D 225 5 4 HELIX 41 41 GLY D 237 GLY D 241 5 5 SHEET 1 A 7 ALA A 55 HIS A 59 0 SHEET 2 A 7 LYS A 33 ASP A 38 1 N PHE A 36 O ARG A 56 SHEET 3 A 7 VAL A 9 SER A 13 1 N ALA A 10 O VAL A 35 SHEET 4 A 7 VAL A 84 ASN A 87 1 O VAL A 86 N LEU A 11 SHEET 5 A 7 GLY A 133 ILE A 138 1 O ILE A 136 N LEU A 85 SHEET 6 A 7 ILE A 176 PRO A 183 1 O ARG A 177 N ILE A 135 SHEET 7 A 7 GLU A 231 VAL A 234 1 O PHE A 232 N SER A 180 SHEET 1 B 7 ALA B 55 HIS B 59 0 SHEET 2 B 7 LYS B 33 ASP B 38 1 N PHE B 36 O ARG B 56 SHEET 3 B 7 VAL B 9 SER B 13 1 N ALA B 10 O VAL B 35 SHEET 4 B 7 VAL B 84 ASN B 87 1 O VAL B 86 N LEU B 11 SHEET 5 B 7 GLY B 133 ILE B 138 1 O ILE B 136 N LEU B 85 SHEET 6 B 7 ILE B 176 PRO B 183 1 O ARG B 177 N ILE B 135 SHEET 7 B 7 GLU B 231 VAL B 234 1 O PHE B 232 N SER B 180 SHEET 1 C 7 ALA C 55 HIS C 59 0 SHEET 2 C 7 LYS C 33 ASP C 38 1 N PHE C 36 O ARG C 56 SHEET 3 C 7 VAL C 9 SER C 13 1 N ALA C 10 O VAL C 35 SHEET 4 C 7 VAL C 84 ASN C 87 1 O VAL C 86 N LEU C 11 SHEET 5 C 7 GLY C 133 ILE C 138 1 O ILE C 136 N LEU C 85 SHEET 6 C 7 ILE C 176 PRO C 183 1 O ARG C 177 N ILE C 135 SHEET 7 C 7 GLU C 231 VAL C 234 1 O PHE C 232 N HIS C 182 SHEET 1 D 7 ALA D 55 HIS D 59 0 SHEET 2 D 7 LYS D 33 ASP D 38 1 N PHE D 36 O ARG D 56 SHEET 3 D 7 VAL D 9 SER D 13 1 N ALA D 10 O VAL D 35 SHEET 4 D 7 VAL D 84 ASN D 87 1 O VAL D 86 N LEU D 11 SHEET 5 D 7 GLY D 133 ILE D 138 1 O ILE D 136 N LEU D 85 SHEET 6 D 7 ILE D 176 PRO D 183 1 O ARG D 177 N ILE D 135 SHEET 7 D 7 GLU D 231 VAL D 234 1 O PHE D 232 N SER D 180 SITE 1 AC1 28 GLY A 14 ARG A 17 GLY A 18 MET A 19 SITE 2 AC1 28 ASP A 38 LEU A 40 LEU A 60 ASP A 61 SITE 3 AC1 28 VAL A 62 ASN A 88 ALA A 89 GLY A 90 SITE 4 AC1 28 ILE A 138 SER A 139 SER A 140 TYR A 153 SITE 5 AC1 28 LYS A 157 PRO A 183 GLY A 184 VAL A 186 SITE 6 AC1 28 THR A 188 PRO A 189 MET A 190 THR A 191 SITE 7 AC1 28 AOI A 401 HOH A 520 HOH A 633 HOH A 642 SITE 1 AC2 8 LEU A 92 GLU A 142 CYS A 150 TYR A 153 SITE 2 AC2 8 VAL A 194 PHE A 199 NAI A 300 HOH A 738 SITE 1 AC3 28 GLY B 14 ARG B 17 GLY B 18 MET B 19 SITE 2 AC3 28 ASP B 38 LEU B 40 LEU B 60 ASP B 61 SITE 3 AC3 28 VAL B 62 ASN B 88 ALA B 89 GLY B 90 SITE 4 AC3 28 ILE B 138 SER B 139 SER B 140 TYR B 153 SITE 5 AC3 28 LYS B 157 PRO B 183 GLY B 184 VAL B 186 SITE 6 AC3 28 THR B 188 PRO B 189 MET B 190 THR B 191 SITE 7 AC3 28 HOH B 507 HOH B 614 HOH B 622 AOI B1401 SITE 1 AC4 9 LEU B 92 GLU B 142 CYS B 150 TYR B 153 SITE 2 AC4 9 VAL B 194 ILE B 198 PHE B 199 HOH B 592 SITE 3 AC4 9 NAI B1300 SITE 1 AC5 26 GLY C 14 ARG C 17 GLY C 18 MET C 19 SITE 2 AC5 26 ASP C 38 LEU C 40 LEU C 60 ASP C 61 SITE 3 AC5 26 VAL C 62 ASN C 88 ALA C 89 ILE C 138 SITE 4 AC5 26 SER C 139 SER C 140 TYR C 153 LYS C 157 SITE 5 AC5 26 PRO C 183 GLY C 184 VAL C 186 THR C 188 SITE 6 AC5 26 PRO C 189 MET C 190 THR C 191 HOH C 514 SITE 7 AC5 26 HOH C 650 AOI C2401 SITE 1 AC6 9 LEU C 92 GLU C 142 CYS C 150 TYR C 153 SITE 2 AC6 9 VAL C 194 ILE C 198 PHE C 199 HOH C 659 SITE 3 AC6 9 NAI C2300 SITE 1 AC7 26 GLY D 14 ARG D 17 GLY D 18 MET D 19 SITE 2 AC7 26 ASP D 38 LEU D 40 LEU D 60 ASP D 61 SITE 3 AC7 26 VAL D 62 ASN D 88 ILE D 91 ILE D 138 SITE 4 AC7 26 SER D 139 SER D 140 TYR D 153 LYS D 157 SITE 5 AC7 26 PRO D 183 GLY D 184 VAL D 186 THR D 188 SITE 6 AC7 26 PRO D 189 MET D 190 THR D 191 HOH D 542 SITE 7 AC7 26 HOH D 732 AOI D3401 SITE 1 AC8 9 LEU D 92 GLU D 142 CYS D 150 TYR D 153 SITE 2 AC8 9 VAL D 194 ILE D 198 PHE D 199 HOH D 660 SITE 3 AC8 9 NAI D3300 CRYST1 122.163 122.163 141.246 90.00 90.00 90.00 I 4 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007080 0.00000