HEADER TRANSPORT PROTEIN 07-JAN-99 1NFT TITLE OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (OVOTRANSFERRIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL LOBE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: EGG KEYWDS TRANSFERRIN, OVOTRANSFERRIN, IRON BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MIZUTANI,H.YAMASHITA,H.KUROKAWA,B.MIKAMI,M.HIROSE REVDAT 7 16-OCT-24 1NFT 1 REMARK REVDAT 6 15-NOV-23 1NFT 1 REMARK SEQADV LINK ATOM REVDAT 5 04-APR-18 1NFT 1 REMARK REVDAT 4 13-JUL-11 1NFT 1 VERSN REVDAT 3 24-FEB-09 1NFT 1 VERSN REVDAT 2 29-DEC-99 1NFT 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 13-JAN-99 1NFT 0 JRNL AUTH K.MIZUTANI,H.YAMASHITA,H.KUROKAWA,B.MIKAMI,M.HIROSE JRNL TITL ALTERNATIVE STRUCTURAL STATE OF TRANSFERRIN. THE JRNL TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF IRON-LOADED BUT DOMAIN-OPENED JRNL TITL 3 OVOTRANSFERRIN N-LOBE. JRNL REF J.BIOL.CHEM. V. 274 10190 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 10187803 JRNL DOI 10.1074/JBC.274.15.10190 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 20679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1970 REMARK 3 BIN R VALUE (WORKING SET) : 0.2619 REMARK 3 BIN FREE R VALUE : 0.2712 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2543 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.030 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE M18X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CARBON MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 188024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.76500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.76500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.76500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.76500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.76500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -404.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 62.64500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 108.50432 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -62.64500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 108.50432 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 62.64500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 108.50432 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 131.29500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 131.29500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -62.64500 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 108.50432 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 131.29500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 84 NE2 HIS A 84 CD2 -0.071 REMARK 500 HIS A 116 NE2 HIS A 116 CD2 -0.068 REMARK 500 HIS A 134 NE2 HIS A 134 CD2 -0.075 REMARK 500 HIS A 210 NE2 HIS A 210 CD2 -0.071 REMARK 500 HIS A 250 NE2 HIS A 250 CD2 -0.070 REMARK 500 HIS A 283 NE2 HIS A 283 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 9 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 9 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 42 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 119 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TRP A 125 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 125 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 140 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 140 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 GLU A 144 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 SER A 145 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 224 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 233 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP A 244 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 244 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 264 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 264 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP A 264 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 264 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 264 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 309 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 325 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 40.51 -87.00 REMARK 500 SER A 122 -74.59 -54.62 REMARK 500 TRP A 125 -51.47 -141.20 REMARK 500 SER A 145 -58.83 -179.97 REMARK 500 VAL A 208 -156.05 -134.20 REMARK 500 ALA A 217 56.98 -141.48 REMARK 500 GLN A 220 24.33 -140.19 REMARK 500 ASN A 238 32.29 -93.50 REMARK 500 CYS A 242 67.77 -152.66 REMARK 500 ALA A 245 146.54 -173.72 REMARK 500 LEU A 299 -52.23 75.05 REMARK 500 MET A 306 175.79 176.94 REMARK 500 ASP A 315 -166.71 -100.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 333 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 92 OH REMARK 620 2 TYR A 191 OH 106.5 REMARK 620 3 NTA A 334 O 96.2 154.1 REMARK 620 4 NTA A 334 O8 124.7 87.9 89.2 REMARK 620 5 NTA A 334 N 157.9 90.9 64.2 68.0 REMARK 620 6 NTA A 334 O12 96.8 87.2 77.8 137.7 70.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NTA A 334 DBREF 1NFT A 4 332 UNP P02789 TRFE_CHICK 23 351 SEQADV 1NFT VAL A 12 UNP P02789 ILE 31 CONFLICT SEQADV 1NFT VAL A 64 UNP P02789 ALA 83 CONFLICT SEQADV 1NFT ILE A 133 UNP P02789 LEU 152 CONFLICT SEQRES 1 A 329 LYS SER VAL ILE ARG TRP CYS THR VAL SER SER PRO GLU SEQRES 2 A 329 GLU LYS LYS CYS ASN ASN LEU ARG ASP LEU THR GLN GLN SEQRES 3 A 329 GLU ARG ILE SER LEU THR CYS VAL GLN LYS ALA THR TYR SEQRES 4 A 329 LEU ASP CYS ILE LYS ALA ILE ALA ASN ASN GLU ALA ASP SEQRES 5 A 329 ALA ILE SER LEU ASP GLY GLY GLN VAL PHE GLU ALA GLY SEQRES 6 A 329 LEU ALA PRO TYR LYS LEU LYS PRO ILE ALA ALA GLU VAL SEQRES 7 A 329 TYR GLU HIS THR GLU GLY SER THR THR SER TYR TYR ALA SEQRES 8 A 329 VAL ALA VAL VAL LYS LYS GLY THR GLU PHE THR VAL ASN SEQRES 9 A 329 ASP LEU GLN GLY LYS THR SER CYS HIS THR GLY LEU GLY SEQRES 10 A 329 ARG SER ALA GLY TRP ASN ILE PRO ILE GLY THR LEU ILE SEQRES 11 A 329 HIS ARG GLY ALA ILE GLU TRP GLU GLY ILE GLU SER GLY SEQRES 12 A 329 SER VAL GLU GLN ALA VAL ALA LYS PHE PHE SER ALA SER SEQRES 13 A 329 CYS VAL PRO GLY ALA THR ILE GLU GLN LYS LEU CYS ARG SEQRES 14 A 329 GLN CYS LYS GLY ASP PRO LYS THR LYS CYS ALA ARG ASN SEQRES 15 A 329 ALA PRO TYR SER GLY TYR SER GLY ALA PHE HIS CYS LEU SEQRES 16 A 329 LYS ASP GLY LYS GLY ASP VAL ALA PHE VAL LYS HIS THR SEQRES 17 A 329 THR VAL ASN GLU ASN ALA PRO ASP GLN LYS ASP GLU TYR SEQRES 18 A 329 GLU LEU LEU CYS LEU ASP GLY SER ARG GLN PRO VAL ASP SEQRES 19 A 329 ASN TYR LYS THR CYS ASN TRP ALA ARG VAL ALA ALA HIS SEQRES 20 A 329 ALA VAL VAL ALA ARG ASP ASP ASN LYS VAL GLU ASP ILE SEQRES 21 A 329 TRP SER PHE LEU SER LYS ALA GLN SER ASP PHE GLY VAL SEQRES 22 A 329 ASP THR LYS SER ASP PHE HIS LEU PHE GLY PRO PRO GLY SEQRES 23 A 329 LYS LYS ASP PRO VAL LEU LYS ASP LEU LEU PHE LYS ASP SEQRES 24 A 329 SER ALA ILE MET LEU LYS ARG VAL PRO SER LEU MET ASP SEQRES 25 A 329 SER GLN LEU TYR LEU GLY PHE GLU TYR TYR SER ALA ILE SEQRES 26 A 329 GLN SER MET ARG HET SO4 A 351 5 HET SO4 A 353 5 HET SO4 A 354 5 HET FE A 333 1 HET NTA A 334 13 HETNAM SO4 SULFATE ION HETNAM FE FE (III) ION HETNAM NTA NITRILOTRIACETIC ACID FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 FE FE 3+ FORMUL 6 NTA C6 H9 N O6 FORMUL 7 HOH *153(H2 O) HELIX 1 1 SER A 14 THR A 27 1 14 HELIX 2 2 TYR A 42 ALA A 50 1 9 HELIX 3 3 GLY A 61 GLY A 68 1 8 HELIX 4 4 VAL A 106 ASP A 108 5 3 HELIX 5 5 ASN A 126 HIS A 134 1 9 HELIX 6 6 VAL A 148 LYS A 154 1 7 HELIX 7 7 GLN A 168 CYS A 171 5 4 HELIX 8 8 GLY A 190 LYS A 199 1 10 HELIX 9 9 THR A 212 ASN A 216 1 5 HELIX 10 10 PRO A 218 GLU A 223 5 6 HELIX 11 11 VAL A 236 THR A 241 5 6 HELIX 12 12 VAL A 260 PHE A 274 1 15 HELIX 13 13 PRO A 293 LEU A 295 5 3 HELIX 14 14 SER A 316 LEU A 320 1 5 HELIX 15 15 PHE A 322 SER A 330 1 9 SHEET 1 A 2 VAL A 6 THR A 11 0 SHEET 2 A 2 SER A 33 GLN A 38 1 N SER A 33 O ILE A 7 SHEET 1 B 4 ILE A 57 LEU A 59 0 SHEET 2 B 4 ALA A 251 ALA A 254 -1 N VAL A 253 O ILE A 57 SHEET 3 B 4 LYS A 75 TYR A 82 -1 N ALA A 78 O VAL A 252 SHEET 4 B 4 ALA A 304 ARG A 309 -1 N LYS A 308 O ALA A 79 SHEET 1 C 6 ARG A 233 PRO A 235 0 SHEET 2 C 6 TYR A 224 LEU A 227 -1 N LEU A 226 O GLN A 234 SHEET 3 C 6 ALA A 94 LYS A 99 -1 N VAL A 98 O GLU A 225 SHEET 4 C 6 VAL A 205 LYS A 209 -1 N VAL A 208 O VAL A 95 SHEET 5 C 6 THR A 113 HIS A 116 1 N CYS A 115 O VAL A 205 SHEET 6 C 6 ALA A 158 VAL A 161 1 N ALA A 158 O SER A 114 SHEET 1 D 2 THR A 90 ALA A 94 0 SHEET 2 D 2 ALA A 245 ALA A 248 -1 N VAL A 247 O SER A 91 SSBOND 1 CYS A 10 CYS A 45 1555 1555 2.00 SSBOND 2 CYS A 20 CYS A 36 1555 1555 2.02 SSBOND 3 CYS A 115 CYS A 197 1555 1555 1.99 SSBOND 4 CYS A 160 CYS A 174 1555 1555 2.03 SSBOND 5 CYS A 171 CYS A 182 1555 1555 2.00 SSBOND 6 CYS A 228 CYS A 242 1555 1555 2.03 LINK OH TYR A 92 FE FE A 333 1555 1555 1.90 LINK OH TYR A 191 FE FE A 333 1555 1555 1.76 LINK FE FE A 333 O NTA A 334 1555 1555 2.03 LINK FE FE A 333 O8 NTA A 334 1555 1555 1.73 LINK FE FE A 333 N NTA A 334 1555 1555 2.76 LINK FE FE A 333 O12 NTA A 334 1555 1555 2.22 CISPEP 1 ALA A 70 PRO A 71 0 11.17 CISPEP 2 GLY A 286 PRO A 287 0 3.45 SITE 1 AC1 5 SER A 91 TYR A 92 HIS A 250 HOH A 409 SITE 2 AC1 5 HOH A 546 SITE 1 AC2 6 GLY A 190 TYR A 191 SER A 192 HOH A 442 SITE 2 AC2 6 HOH A 478 HOH A 485 SITE 1 AC3 3 LYS A 175 GLY A 176 PRO A 187 SITE 1 AC4 3 TYR A 92 TYR A 191 NTA A 334 SITE 1 AC5 9 TYR A 92 THR A 117 ARG A 121 SER A 122 SITE 2 AC5 9 ALA A 123 GLY A 124 TYR A 191 FE A 333 SITE 3 AC5 9 HOH A 477 CRYST1 125.290 125.290 87.530 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007981 0.004608 0.000000 0.00000 SCALE2 0.000000 0.009216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011425 0.00000